mRNA_A-nodosum_M_contig823.4.1 (mRNA) Ascophyllum nodosum dioecious
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Overview
Homology
BLAST of mRNA_A-nodosum_M_contig823.4.1 vs. uniprot
Match: A0A6H5K1X4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1X4_9PHAE) HSP 1 Score: 83.6 bits (205), Expect = 6.820e-13 Identity = 65/218 (29.82%), Postives = 101/218 (46.33%), Query Frame = 1
Query: 2008 GRRYIERDENQYRKKYSR**YEILSSVLLVLKY*NTVYTEIRTRLCCESLLLLQLK*GAI*FS*RKSEIRIRKYD*LASTVALPSCYTQQGITLRTRRLLWAGTLLRMSCGRLPKRIVFGNLEGAVRRGRGGKEKEWTDCIQSDIRAFG----------------IAGD------W-KATTLKAEV-WVETVTESGRRFMAAWRKEEVDAARHRQEKR 2589
GR +R + +R K E + ++L + + +T LLL++ I + +K R Y A T+ C + + T+R RRLL+AG L R GRLPKR++ G L G +R RGG+E+ W C+ D++AFG + D W +A ++ EV W V + RFM +W ++E +A+R R KR
Sbjct: 134 GRELFDRPQAPFRLKIRLLQAEAMEALLYGCMTWSPLSGHYQTLRSIHHRLLLRV----IGYKRKKDTYRQLSY---AQTLKRVECQSVEA-TIRQRRLLFAGALARQPDGRLPKRLMLGELAGGEKRRRGGQEQNWPKCVLDDLKAFGADHGSTNTDPCCLGIPVPNDTAPKLKWTEAAKVEGEVPWHAAVLQGAERFMTSWHEKEEEASRQRALKR 343
BLAST of mRNA_A-nodosum_M_contig823.4.1 vs. uniprot
Match: A0A6H5JYE2_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYE2_9PHAE) HSP 1 Score: 76.6 bits (187), Expect = 3.850e-12 Identity = 44/132 (33.33%), Postives = 63/132 (47.73%), Query Frame = 1
Query: 2239 ASTVALPSCYTQQGITLRTRRLLWAGTLLRMSCGRLPKRIVFGNLEGAVRRGRGGKEKEWTDCIQSDIRAFG------------------------IAGDWKATTLKAEVWVETVTESGRRFMAAWRKEEVD 2562
A T+ C + + T+R RRLL+AG+L R GRLPKR++FG L G +R RGG+E+ W C+ D++AFG + G A W V + RFM +W K+E +
Sbjct: 48 AQTLKRVECQSVEA-TIRQRRLLFAGSLARQPDGRLPKRLMFGELAGGEKRRRGGQEQNWPKCVLDDLKAFGADHGSTKTDPCCFGIPGPKDTAPKLKGTEAAKVEGGVPWHAAVLQGAERFMTSWHKKEAE 178
BLAST of mRNA_A-nodosum_M_contig823.4.1 vs. uniprot
Match: A0A6H5KS82_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KS82_9PHAE) HSP 1 Score: 80.1 bits (196), Expect = 1.220e-11 Identity = 64/218 (29.36%), Postives = 96/218 (44.04%), Query Frame = 1
Query: 2008 GRRYIERDENQYRKKYSR**YEILSSVLLVLKY*NTVYTEIRTRLCCESLLLLQLK*GAI*FS*RKSEIRIRKYD*LASTVALPSCYTQQGITLRTRRLLWAGTLLRMSCGRLPKRIVFGNLEGAVRRGRGGKEKEWTDCIQSDIRAFGI-------------AGDWKATTLKAE-----------VWVETVTESGRRFMAAWRKEEVDAARHRQEKR 2589
GR +R + R K E + ++L + + +T LLL++ I + +K R Y A T+ C + + T+R RRLL+AG L R GRLPKR++FG L G +R RGG+E+ W C+ D+ AFG + K T K + W V + RFM +W ++E +A+R R KR
Sbjct: 462 GRELFDRPQAPSRLKIRLLQAEAMEALLYGCMTWSPLSRHYQTLRSIHHRLLLRV----IGYKRKKDTYRQLSY---AQTLKRFECQSVEA-TIRQRRLLFAGALARQPDGRLPKRLMFGELAGGEKRRRGGQEQNWPKCVLDDLNAFGADHGSTKTDPCCLGIPETKDTAPKLQWTEAAKVEGGVPWHAAVLQGAERFMTSWHEKEEEASRQRALKR 671
BLAST of mRNA_A-nodosum_M_contig823.4.1 vs. uniprot
Match: A0A6H5JFE2_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFE2_9PHAE) HSP 1 Score: 79.3 bits (194), Expect = 1.260e-11 Identity = 48/126 (38.10%), Postives = 65/126 (51.59%), Query Frame = 1
Query: 2284 TLRTRRLLWAGTLLRMSCGRLPKRIVFGNLEGAVRRGRGGKEKEWTDCIQSDIRAFGIA-GDWKA------------TTLKAE-----------VWVETVTESGRRFMAAWRKEEVDAARHRQEKR 2589
T+R RRLL+AG L R GRLPKR++FG L G +R RGG+E+ W C+ D++AFG G K TT K + W V + RFM +W ++E +A+R R KR
Sbjct: 324 TIRQRRLLFAGALARQPDGRLPKRLMFGELAGGEKRRRGGQEQNWPKCVLDDLKAFGADHGSTKTDPCCLGIPVPKDTTPKVKWTEAAKVEGGVPWHAAVLQGAERFMTSWHEKEEEASRQRALKR 449
BLAST of mRNA_A-nodosum_M_contig823.4.1 vs. uniprot
Match: A0A6H5JWN9_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWN9_9PHAE) HSP 1 Score: 79.7 bits (195), Expect = 1.390e-11 Identity = 42/104 (40.38%), Postives = 60/104 (57.69%), Query Frame = 1
Query: 34 PLSHRADGFQMLVDSGSSKHFVDPKLVPRVETRMQDYTQIDPPMEIKAAGHNTLLGIAQGTLLVVVRDTQDICRTVKLPIVLVPGLGQNIFSKAMAAQKDVKTI 345
P S G +M+VDSG++ +++DP L P + T M+D + P I AAG + L G+A GT+ V D R V ++LVPGLG N+FS +A K V T+
Sbjct: 226 PTSEEVVGIRMVVDSGATDNYLDPGLTPGLRTHMRDVEYLRVPHTIVAAGQHVLKGVATGTIFGAVTDDNGNDRHVSFRVILVPGLGTNLFSVTLAMLKGVATL 329
BLAST of mRNA_A-nodosum_M_contig823.4.1 vs. uniprot
Match: A0A6H5JAH7_9PHAE (Reverse transcriptase domain-containing protein n=5 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAH7_9PHAE) HSP 1 Score: 74.3 bits (181), Expect = 6.900e-11 Identity = 49/149 (32.89%), Postives = 75/149 (50.34%), Query Frame = 1
Query: 2008 GRRYIERDENQYRKKYSR**YEILSSVLLVLKY*NTVYTEIRTRLCCESLLLLQLK*GAI*FS*RKSEIRIRKYD*LASTVALPSCYTQQGITLRTRRLLWAGTLLRMSCGRLPKRIVFGNLEGAVRRGRGGKEKEWTDCIQSDIRAFG 2454
GR +R + +R K E + ++L + + +T LLL++ I + +K R Y A T+ C + + T+R RRLL+AG L R GRLPKR++FG L G +R RGG+E+ W C+ D++AFG
Sbjct: 110 GRELFDRPQAPFRLKIRLLQAEAMEALLYGCMTWSPLSGHYQTLRSIHHRLLLRV----IGYKRKKDTYRQLSY---AQTLRRVECESVEP-TIRQRRLLFAGALARQPDGRLPKRLMFGELAGGEKRRRGGQEQNWPKCVLDDLKAFG 250
BLAST of mRNA_A-nodosum_M_contig823.4.1 vs. uniprot
Match: A0A6H5JU56_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JU56_9PHAE) HSP 1 Score: 75.5 bits (184), Expect = 2.900e-10 Identity = 41/119 (34.45%), Postives = 62/119 (52.10%), Query Frame = 1
Query: 2239 ASTVALPSCYTQQGITLRTRRLLWAGTLLRMSCGRLPKRIVFGNLEGAVRRGRGGKEKEWTDCIQSDIRAFGIA-----GDWKATTLKAEVWVETVTESGRRFMAAWRKEEVDAARHRQ 2580
A + P C +T+R RRL +AG ++RM RL KR++ G + G V RGG+E +W + D+ AF + G WK + +EVW V + FM W ++E +A+ RQ
Sbjct: 408 AQALIQPGCEEIIEVTVRKRRLCFAGFVMRMQDSRLSKRMLLGAMAGGVGY-RGGQESDWVSRLGEDLVAFNMGDEKEGGKWKESAKNSEVWYNKVEDGAAWFMRKWHRQEAEASAKRQ 525
BLAST of mRNA_A-nodosum_M_contig823.4.1 vs. uniprot
Match: A0A6H5KF72_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF72_9PHAE) HSP 1 Score: 71.2 bits (173), Expect = 3.430e-10 Identity = 46/119 (38.66%), Postives = 62/119 (52.10%), Query Frame = 1
Query: 2284 TLRTRRLLWAGTLLRMSCGRLPKRIVFGNLEGAVRRGRGGKEKEWTDCIQSDIRAF--------------GIAG-DW-KATTLKAEV-WVETVTESGRRFMAAWRKEEVDAARHRQEKR 2589
T+R R LL+AG + R GRLPKR++FG L G GRG E+ W C++ D++ F GI DW +A ++ V W V + RFMA+W K E A+R R KR
Sbjct: 54 TVRQRCLLFAGAMARQPDGRLPKRLMFGELVGGENPGRGSPEQNWLICLKDDLKMFEARHGSTPDKRSFFGIPKPDWDEAAKVEGGVPWHAGVLQGAERFMASWHKGEEKASRQRAIKR 172
BLAST of mRNA_A-nodosum_M_contig823.4.1 vs. uniprot
Match: A0A6H5JTZ8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTZ8_9PHAE) HSP 1 Score: 72.4 bits (176), Expect = 7.430e-10 Identity = 47/141 (33.33%), Postives = 67/141 (47.52%), Query Frame = 1
Query: 2239 ASTVALPSCYTQQGITLRTRRLLWAGTLLRMSCGRLPKRIVFGNLEGAVRRGRGGKEKEWTDCIQSDIRAFGI-------------------AGDWKATTLKAEV-----WVETVTESGRRFMAAWRKEEVDAARHRQEKR 2589
A T+ C + + T+R RRLL+AG + R GRLPKR+V G L G +R G+E+ W C+ D++AFG G T A+V W V RFM +W ++E +A+R R+ KR
Sbjct: 161 AQTLKRVECQSVEA-TIRQRRLLFAGAMARQPDGRLPKRLVLGELAGGEKRRSAGQEQNWPKCVLDDLKAFGADHGSTKTDPCCLGIPVPKDTGPKLKWTEAAKVEEGVPWHAAVLMGADRFMTSWHEKEEEASRQRELKR 300
BLAST of mRNA_A-nodosum_M_contig823.4.1 vs. uniprot
Match: A0A6H5JVF6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVF6_9PHAE) HSP 1 Score: 74.3 bits (181), Expect = 8.530e-10 Identity = 44/120 (36.67%), Postives = 65/120 (54.17%), Query Frame = 1
Query: 1 GIGFSFACCHPPLS---HRADG--FQMLVDSGSSKHFVDPKLVPRVETRMQDYTQIDPPMEIKAAGHNTLLGIAQGTLLVVVRDTQDICRTVKLPIVLVPGLGQNIFSKAMAAQKDVKTI 345
G +F H LS R+DG +M+VDSG++ +++DP L P + M+D + P I AAG + L G+ GT+ V D R V ++LVPGLG N+FS +A K + T+
Sbjct: 573 GFFGAFMATHAELSLAPFRSDGSSIRMVVDSGATDNYLDPGLTPGLRAHMRDVEHLRVPHTIVAAGQHVLKGVTTGTIFGAVTDDNGNDRHVSFRVILVPGLGTNLFSVTLAMLKGMATL 692 The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig823.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_A-nodosum_M_contig823.4.1 >prot_A-nodosum_M_contig823.4.1 ID=prot_A-nodosum_M_contig823.4.1|Name=mRNA_A-nodosum_M_contig823.4.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=242bp MLVDSGSSKHFVDPKLVPRVETRMQDYTQIDPPMEIKAAGHNTLLGIAQGback to top mRNA from alignment at A-nodosum_M_contig823:16803..19556+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_A-nodosum_M_contig823.4.1 ID=mRNA_A-nodosum_M_contig823.4.1|Name=mRNA_A-nodosum_M_contig823.4.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=2754bp|location=Sequence derived from alignment at A-nodosum_M_contig823:16803..19556+ (Ascophyllum nodosum dioecious)back to top Coding sequence (CDS) from alignment at A-nodosum_M_contig823:16803..19556+ >mRNA_A-nodosum_M_contig823.4.1 ID=mRNA_A-nodosum_M_contig823.4.1|Name=mRNA_A-nodosum_M_contig823.4.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=726bp|location=Sequence derived from alignment at A-nodosum_M_contig823:16803..19556+ (Ascophyllum nodosum dioecious)back to top |