mRNA_A-nodosum_M_contig823.4.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig823.4.1
Unique NamemRNA_A-nodosum_M_contig823.4.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
BLAST of mRNA_A-nodosum_M_contig823.4.1 vs. uniprot
Match: A0A6H5K1X4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1X4_9PHAE)

HSP 1 Score: 83.6 bits (205), Expect = 6.820e-13
Identity = 65/218 (29.82%), Postives = 101/218 (46.33%), Query Frame = 1
Query: 2008 GRRYIERDENQYRKKYSR**YEILSSVLLVLKY*NTVYTEIRTRLCCESLLLLQLK*GAI*FS*RKSEIRIRKYD*LASTVALPSCYTQQGITLRTRRLLWAGTLLRMSCGRLPKRIVFGNLEGAVRRGRGGKEKEWTDCIQSDIRAFG----------------IAGD------W-KATTLKAEV-WVETVTESGRRFMAAWRKEEVDAARHRQEKR 2589
            GR   +R +  +R K      E + ++L      + +    +T       LLL++    I +  +K   R   Y   A T+    C + +  T+R RRLL+AG L R   GRLPKR++ G L G  +R RGG+E+ W  C+  D++AFG                +  D      W +A  ++ EV W   V +   RFM +W ++E +A+R R  KR
Sbjct:  134 GRELFDRPQAPFRLKIRLLQAEAMEALLYGCMTWSPLSGHYQTLRSIHHRLLLRV----IGYKRKKDTYRQLSY---AQTLKRVECQSVEA-TIRQRRLLFAGALARQPDGRLPKRLMLGELAGGEKRRRGGQEQNWPKCVLDDLKAFGADHGSTNTDPCCLGIPVPNDTAPKLKWTEAAKVEGEVPWHAAVLQGAERFMTSWHEKEEEASRQRALKR 343          
BLAST of mRNA_A-nodosum_M_contig823.4.1 vs. uniprot
Match: A0A6H5JYE2_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYE2_9PHAE)

HSP 1 Score: 76.6 bits (187), Expect = 3.850e-12
Identity = 44/132 (33.33%), Postives = 63/132 (47.73%), Query Frame = 1
Query: 2239 ASTVALPSCYTQQGITLRTRRLLWAGTLLRMSCGRLPKRIVFGNLEGAVRRGRGGKEKEWTDCIQSDIRAFG------------------------IAGDWKATTLKAEVWVETVTESGRRFMAAWRKEEVD 2562
            A T+    C + +  T+R RRLL+AG+L R   GRLPKR++FG L G  +R RGG+E+ W  C+  D++AFG                        + G   A       W   V +   RFM +W K+E +
Sbjct:   48 AQTLKRVECQSVEA-TIRQRRLLFAGSLARQPDGRLPKRLMFGELAGGEKRRRGGQEQNWPKCVLDDLKAFGADHGSTKTDPCCFGIPGPKDTAPKLKGTEAAKVEGGVPWHAAVLQGAERFMTSWHKKEAE 178          
BLAST of mRNA_A-nodosum_M_contig823.4.1 vs. uniprot
Match: A0A6H5KS82_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KS82_9PHAE)

HSP 1 Score: 80.1 bits (196), Expect = 1.220e-11
Identity = 64/218 (29.36%), Postives = 96/218 (44.04%), Query Frame = 1
Query: 2008 GRRYIERDENQYRKKYSR**YEILSSVLLVLKY*NTVYTEIRTRLCCESLLLLQLK*GAI*FS*RKSEIRIRKYD*LASTVALPSCYTQQGITLRTRRLLWAGTLLRMSCGRLPKRIVFGNLEGAVRRGRGGKEKEWTDCIQSDIRAFGI-------------AGDWKATTLKAE-----------VWVETVTESGRRFMAAWRKEEVDAARHRQEKR 2589
            GR   +R +   R K      E + ++L      + +    +T       LLL++    I +  +K   R   Y   A T+    C + +  T+R RRLL+AG L R   GRLPKR++FG L G  +R RGG+E+ W  C+  D+ AFG                + K T  K +            W   V +   RFM +W ++E +A+R R  KR
Sbjct:  462 GRELFDRPQAPSRLKIRLLQAEAMEALLYGCMTWSPLSRHYQTLRSIHHRLLLRV----IGYKRKKDTYRQLSY---AQTLKRFECQSVEA-TIRQRRLLFAGALARQPDGRLPKRLMFGELAGGEKRRRGGQEQNWPKCVLDDLNAFGADHGSTKTDPCCLGIPETKDTAPKLQWTEAAKVEGGVPWHAAVLQGAERFMTSWHEKEEEASRQRALKR 671          
BLAST of mRNA_A-nodosum_M_contig823.4.1 vs. uniprot
Match: A0A6H5JFE2_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFE2_9PHAE)

HSP 1 Score: 79.3 bits (194), Expect = 1.260e-11
Identity = 48/126 (38.10%), Postives = 65/126 (51.59%), Query Frame = 1
Query: 2284 TLRTRRLLWAGTLLRMSCGRLPKRIVFGNLEGAVRRGRGGKEKEWTDCIQSDIRAFGIA-GDWKA------------TTLKAE-----------VWVETVTESGRRFMAAWRKEEVDAARHRQEKR 2589
            T+R RRLL+AG L R   GRLPKR++FG L G  +R RGG+E+ W  C+  D++AFG   G  K             TT K +            W   V +   RFM +W ++E +A+R R  KR
Sbjct:  324 TIRQRRLLFAGALARQPDGRLPKRLMFGELAGGEKRRRGGQEQNWPKCVLDDLKAFGADHGSTKTDPCCLGIPVPKDTTPKVKWTEAAKVEGGVPWHAAVLQGAERFMTSWHEKEEEASRQRALKR 449          
BLAST of mRNA_A-nodosum_M_contig823.4.1 vs. uniprot
Match: A0A6H5JWN9_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWN9_9PHAE)

HSP 1 Score: 79.7 bits (195), Expect = 1.390e-11
Identity = 42/104 (40.38%), Postives = 60/104 (57.69%), Query Frame = 1
Query:   34 PLSHRADGFQMLVDSGSSKHFVDPKLVPRVETRMQDYTQIDPPMEIKAAGHNTLLGIAQGTLLVVVRDTQDICRTVKLPIVLVPGLGQNIFSKAMAAQKDVKTI 345
            P S    G +M+VDSG++ +++DP L P + T M+D   +  P  I AAG + L G+A GT+   V D     R V   ++LVPGLG N+FS  +A  K V T+
Sbjct:  226 PTSEEVVGIRMVVDSGATDNYLDPGLTPGLRTHMRDVEYLRVPHTIVAAGQHVLKGVATGTIFGAVTDDNGNDRHVSFRVILVPGLGTNLFSVTLAMLKGVATL 329          
BLAST of mRNA_A-nodosum_M_contig823.4.1 vs. uniprot
Match: A0A6H5JAH7_9PHAE (Reverse transcriptase domain-containing protein n=5 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAH7_9PHAE)

HSP 1 Score: 74.3 bits (181), Expect = 6.900e-11
Identity = 49/149 (32.89%), Postives = 75/149 (50.34%), Query Frame = 1
Query: 2008 GRRYIERDENQYRKKYSR**YEILSSVLLVLKY*NTVYTEIRTRLCCESLLLLQLK*GAI*FS*RKSEIRIRKYD*LASTVALPSCYTQQGITLRTRRLLWAGTLLRMSCGRLPKRIVFGNLEGAVRRGRGGKEKEWTDCIQSDIRAFG 2454
            GR   +R +  +R K      E + ++L      + +    +T       LLL++    I +  +K   R   Y   A T+    C + +  T+R RRLL+AG L R   GRLPKR++FG L G  +R RGG+E+ W  C+  D++AFG
Sbjct:  110 GRELFDRPQAPFRLKIRLLQAEAMEALLYGCMTWSPLSGHYQTLRSIHHRLLLRV----IGYKRKKDTYRQLSY---AQTLRRVECESVEP-TIRQRRLLFAGALARQPDGRLPKRLMFGELAGGEKRRRGGQEQNWPKCVLDDLKAFG 250          
BLAST of mRNA_A-nodosum_M_contig823.4.1 vs. uniprot
Match: A0A6H5JU56_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JU56_9PHAE)

HSP 1 Score: 75.5 bits (184), Expect = 2.900e-10
Identity = 41/119 (34.45%), Postives = 62/119 (52.10%), Query Frame = 1
Query: 2239 ASTVALPSCYTQQGITLRTRRLLWAGTLLRMSCGRLPKRIVFGNLEGAVRRGRGGKEKEWTDCIQSDIRAFGIA-----GDWKATTLKAEVWVETVTESGRRFMAAWRKEEVDAARHRQ 2580
            A  +  P C     +T+R RRL +AG ++RM   RL KR++ G + G V   RGG+E +W   +  D+ AF +      G WK +   +EVW   V +    FM  W ++E +A+  RQ
Sbjct:  408 AQALIQPGCEEIIEVTVRKRRLCFAGFVMRMQDSRLSKRMLLGAMAGGVGY-RGGQESDWVSRLGEDLVAFNMGDEKEGGKWKESAKNSEVWYNKVEDGAAWFMRKWHRQEAEASAKRQ 525          
BLAST of mRNA_A-nodosum_M_contig823.4.1 vs. uniprot
Match: A0A6H5KF72_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF72_9PHAE)

HSP 1 Score: 71.2 bits (173), Expect = 3.430e-10
Identity = 46/119 (38.66%), Postives = 62/119 (52.10%), Query Frame = 1
Query: 2284 TLRTRRLLWAGTLLRMSCGRLPKRIVFGNLEGAVRRGRGGKEKEWTDCIQSDIRAF--------------GIAG-DW-KATTLKAEV-WVETVTESGRRFMAAWRKEEVDAARHRQEKR 2589
            T+R R LL+AG + R   GRLPKR++FG L G    GRG  E+ W  C++ D++ F              GI   DW +A  ++  V W   V +   RFMA+W K E  A+R R  KR
Sbjct:   54 TVRQRCLLFAGAMARQPDGRLPKRLMFGELVGGENPGRGSPEQNWLICLKDDLKMFEARHGSTPDKRSFFGIPKPDWDEAAKVEGGVPWHAGVLQGAERFMASWHKGEEKASRQRAIKR 172          
BLAST of mRNA_A-nodosum_M_contig823.4.1 vs. uniprot
Match: A0A6H5JTZ8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTZ8_9PHAE)

HSP 1 Score: 72.4 bits (176), Expect = 7.430e-10
Identity = 47/141 (33.33%), Postives = 67/141 (47.52%), Query Frame = 1
Query: 2239 ASTVALPSCYTQQGITLRTRRLLWAGTLLRMSCGRLPKRIVFGNLEGAVRRGRGGKEKEWTDCIQSDIRAFGI-------------------AGDWKATTLKAEV-----WVETVTESGRRFMAAWRKEEVDAARHRQEKR 2589
            A T+    C + +  T+R RRLL+AG + R   GRLPKR+V G L G  +R   G+E+ W  C+  D++AFG                     G     T  A+V     W   V     RFM +W ++E +A+R R+ KR
Sbjct:  161 AQTLKRVECQSVEA-TIRQRRLLFAGAMARQPDGRLPKRLVLGELAGGEKRRSAGQEQNWPKCVLDDLKAFGADHGSTKTDPCCLGIPVPKDTGPKLKWTEAAKVEEGVPWHAAVLMGADRFMTSWHEKEEEASRQRELKR 300          
BLAST of mRNA_A-nodosum_M_contig823.4.1 vs. uniprot
Match: A0A6H5JVF6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVF6_9PHAE)

HSP 1 Score: 74.3 bits (181), Expect = 8.530e-10
Identity = 44/120 (36.67%), Postives = 65/120 (54.17%), Query Frame = 1
Query:    1 GIGFSFACCHPPLS---HRADG--FQMLVDSGSSKHFVDPKLVPRVETRMQDYTQIDPPMEIKAAGHNTLLGIAQGTLLVVVRDTQDICRTVKLPIVLVPGLGQNIFSKAMAAQKDVKTI 345
            G   +F   H  LS    R+DG   +M+VDSG++ +++DP L P +   M+D   +  P  I AAG + L G+  GT+   V D     R V   ++LVPGLG N+FS  +A  K + T+
Sbjct:  573 GFFGAFMATHAELSLAPFRSDGSSIRMVVDSGATDNYLDPGLTPGLRAHMRDVEHLRVPHTIVAAGQHVLKGVTTGTIFGAVTDDNGNDRHVSFRVILVPGLGTNLFSVTLAMLKGMATL 692          
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig823.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K1X4_9PHAE6.820e-1329.82Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JYE2_9PHAE3.850e-1233.33Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5KS82_9PHAE1.220e-1129.36Reverse transcriptase domain-containing protein (F... [more]
A0A6H5JFE2_9PHAE1.260e-1138.10Reverse transcriptase domain-containing protein n=... [more]
A0A6H5JWN9_9PHAE1.390e-1140.38Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JAH7_9PHAE6.900e-1132.89Reverse transcriptase domain-containing protein n=... [more]
A0A6H5JU56_9PHAE2.900e-1034.45Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5KF72_9PHAE3.430e-1038.66Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JTZ8_9PHAE7.430e-1033.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JVF6_9PHAE8.530e-1036.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig823contigA-nodosum_M_contig823:16803..19556 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size2754
Hectar predicted targeting categoryother localisation
Exons1
Cds size726
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870153.7945251-UTR-A-nodosum_M_contig823:16802..168651680870153.7945251-UTR-A-nodosum_M_contig823:16802..16865Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig823 16803..16865 +
1680870153.8182778-UTR-A-nodosum_M_contig823:17591..195561680870153.8182778-UTR-A-nodosum_M_contig823:17591..19556Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig823 17592..19556 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870153.806274-CDS-A-nodosum_M_contig823:16865..175911680870153.806274-CDS-A-nodosum_M_contig823:16865..17591Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig823 16866..17591 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig823.4.1prot_A-nodosum_M_contig823.4.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig823 16866..17591 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig823.4.1

>prot_A-nodosum_M_contig823.4.1 ID=prot_A-nodosum_M_contig823.4.1|Name=mRNA_A-nodosum_M_contig823.4.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=242bp
MLVDSGSSKHFVDPKLVPRVETRMQDYTQIDPPMEIKAAGHNTLLGIAQG
TLLVVVRDTQDICRTVKLPIVLVPGLGQNIFSKAMAAQKDVKTIITKAGS
IVDLGLFSIQLTRSDNLDHLDLAISKESRRTDSACCAISGNAFSKETVLT
ASVPQKYIALSSAVTVSMNIDRRALQDGSLVVGHDNDSPTSEVRCCEKMT
LRRPWLLVLMKGVRVQIMWEMNTKHKTWKLRARIMLEMMRQ*
back to top

mRNA from alignment at A-nodosum_M_contig823:16803..19556+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig823.4.1 ID=mRNA_A-nodosum_M_contig823.4.1|Name=mRNA_A-nodosum_M_contig823.4.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=2754bp|location=Sequence derived from alignment at A-nodosum_M_contig823:16803..19556+ (Ascophyllum nodosum dioecious)
GGCATAGGATTTAGCTTTGCATGTTGTCACCCACCGCTCTCCCATAGAGC AGACGGTTTTCAGATGCTTGTAGACTCTGGGTCTTCGAAGCATTTCGTTG ATCCGAAGTTAGTTCCTAGGGTTGAGACTAGGATGCAAGATTACACCCAA ATAGATCCCCCGATGGAAATCAAAGCTGCGGGTCACAACACGCTTCTTGG CATAGCTCAGGGTACTCTACTGGTTGTAGTACGCGATACGCAAGATATCT GTAGGACTGTAAAATTGCCGATAGTTCTTGTACCAGGTTTAGGGCAGAAT ATATTTTCTAAAGCGATGGCAGCTCAAAAAGATGTTAAAACTATTATCAC TAAGGCAGGCTCCATTGTTGACCTTGGCTTGTTTTCAATTCAGCTAACGC GGTCGGATAATCTGGATCACCTCGACTTGGCAATTTCAAAAGAGAGTAGA CGGACAGATTCGGCATGTTGCGCTATTTCAGGAAATGCATTTAGCAAAGA AACAGTACTGACGGCTTCAGTTCCACAAAAATATATAGCATTATCCTCAG CAGTTACTGTAAGCATGAACATTGACCGGAGAGCATTGCAAGACGGTTCT TTAGTAGTAGGGCATGATAACGACAGCCCAACGTCAGAAGTGAGATGTTG CGAGAAAATGACCCTCCGTCGTCCATGGTTGCTGGTATTGATGAAGGGAG TAAGAGTTCAGATCATGTGGGAAATGAATACGAAACACAAAACGTGGAAA CTACGGGCTCGTATAATGTTGGAGATGATGAGGCAGTAAAAAAGCAGGAT GACACGTTGACCTTGCGGTTCATAGGAAAAAGCAATACAATGCAATAGGG AATAGATATTACAGGAGAGGAAATAAGGAACTGTTGTAAACAGCCAACAG AAAAACAACTAGGAGCATCTACTTCAGAAATACTAGGTAATAATACAAAA GGTTTGGAAAAGGCTGTTTCCCCAGTGGTGTGTCAAATCAAGGTATGGGC CACGGTGGTTGCAAGTAGTGCAATGAATTTGAAAAATTACAAGAAATGGT TGAAAGCAATCGAGCCTGAACTAAAAAGTACAAGAGCTACTACAGGTAGT GTAGCAGTTGTTAGTTCTGCACTCAATATTCCACAAAAGGTAACAACTGC TAGATGGGCTTTCAAGGAAAAACCTGATCGTAGTTCTAAGGCAAGACAGG ATGTTCTAGGATGGAAGCAGAAGCATGATAGCATTGATCGTGTAATCACG TCTGTCTGCAGATTTGATGTACTAGTTATAGCGTCTGCAAAAAGAGTCAA TATTCCAGATGTTCAAAATGTCCTGTTAGGTTGGATCATCGGCAAAAATG AACTGAAATCAACTATACACTTCAGTAAACTGTATCGTGCTTGTAGAGCA AGGGCTTTGAGTAAGATAAGCTGGCTACTGTGATCGGTTTCAGTTCGAAA TGAAATAAAGGATTGATGGCTGGACACTTGAGATGACTGTCGAGAATCTG ATCTGCGCATTGTTTCCTGAGTTCAGAGTACCGTACGAAAGTTCTAATAA GGAACGTGATCTTACGAGGAGGGAACCAGGACCTAAAGTCGAGCAAGAGT TTTTCGAAGGGCGACTGTCTCATCAGATTAGGCCGCTTCATCTACCCACG TCGATCGTGGTAAGTAAGAGAAAATAATTCTAGCATCAATGTTGAGGGGC GAGTATTTAGTCATAGATAGATCGTTTCTAGCATGATGATGTTACTGAGT TCCTAATATCGGCCATGTCCGAGTAGTCGTCACCTTAGTGTGGTGCGAGC AAAGAAAAAGTTGAAACGACGTGCTCAGTCAGGTGCCTGGTATACCATCA CCATGGTGGTATTGTTTCAATGAAACCCCGTGTATCCGTTGCCCTAGCTT CAAGGGAAAATATTGTCCGTTCAGATGGAAATGCGTTATTAATATTAATA GTCTATCAAGAAAGTGTTGCGTTATTTGACTGAAAAAGCACAGTATAGTA GTAGCAAGGAAGAAGATACATAGAGAGGGATGAAAACCAATACCGAAAGA AATATAGTAGGTAATAATACGAAATATTGTCAAGTGTTCTCCTTGTACTA AAATACTAGAATACTGTATACACTGAGATAAGGACAAGATTGTGTTGCGA GTCCCTTTTGCTCTTACAGCTGAAGTAAGGTGCAATCTGATTTTCTTGAC GGAAAAGTGAAATCAGAATTCGAAAATATGACTAACTAGCATCCACTGTT GCCTTGCCAAGCTGTTATACTCAGCAGGGGATCACGTTGCGAACGAGGAG ACTTCTGTGGGCGGGGACGCTCCTCCGAATGAGTTGCGGGCGGCTGCCGA AGCGAATCGTTTTCGGAAACCTTGAGGGTGCAGTACGGAGAGGACGGGGT GGGAAGGAGAAAGAGTGGACAGATTGCATCCAGAGCGACATCCGGGCGTT TGGCATAGCGGGGGACTGGAAAGCGACGACTTTAAAGGCTGAGGTGTGGG TTGAGACGGTCACGGAGAGTGGGCGGAGGTTCATGGCCGCGTGGAGGAAA GAAGAGGTAGACGCGGCTAGACATCGCCAGGAGAAGAGAGAAGCAACGAG ACTGGGAAACCTGCTATCGCAAACGGGAGTGTAGAATTTTGCGAAGCCAC ACCCATTGGCCTAGTCGACGAGCCGAAGGTATCCTTGTACGGACGCGAGA CCGACCGAGACCTGCGTAGCGCCTATAGATGCGACGCGTGATTTTATTTA TTTT
back to top

Coding sequence (CDS) from alignment at A-nodosum_M_contig823:16803..19556+

>mRNA_A-nodosum_M_contig823.4.1 ID=mRNA_A-nodosum_M_contig823.4.1|Name=mRNA_A-nodosum_M_contig823.4.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=726bp|location=Sequence derived from alignment at A-nodosum_M_contig823:16803..19556+ (Ascophyllum nodosum dioecious)
ATGCTTGTAGACTCTGGGTCTTCGAAGCATTTCGTTGATCCGAAGTTAGT
TCCTAGGGTTGAGACTAGGATGCAAGATTACACCCAAATAGATCCCCCGA
TGGAAATCAAAGCTGCGGGTCACAACACGCTTCTTGGCATAGCTCAGGGT
ACTCTACTGGTTGTAGTACGCGATACGCAAGATATCTGTAGGACTGTAAA
ATTGCCGATAGTTCTTGTACCAGGTTTAGGGCAGAATATATTTTCTAAAG
CGATGGCAGCTCAAAAAGATGTTAAAACTATTATCACTAAGGCAGGCTCC
ATTGTTGACCTTGGCTTGTTTTCAATTCAGCTAACGCGGTCGGATAATCT
GGATCACCTCGACTTGGCAATTTCAAAAGAGAGTAGACGGACAGATTCGG
CATGTTGCGCTATTTCAGGAAATGCATTTAGCAAAGAAACAGTACTGACG
GCTTCAGTTCCACAAAAATATATAGCATTATCCTCAGCAGTTACTGTAAG
CATGAACATTGACCGGAGAGCATTGCAAGACGGTTCTTTAGTAGTAGGGC
ATGATAACGACAGCCCAACGTCAGAAGTGAGATGTTGCGAGAAAATGACC
CTCCGTCGTCCATGGTTGCTGGTATTGATGAAGGGAGTAAGAGTTCAGAT
CATGTGGGAAATGAATACGAAACACAAAACGTGGAAACTACGGGCTCGTA
TAATGTTGGAGATGATGAGGCAGTAA
back to top