mRNA_A-nodosum_M_contig823.3.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig823.3.1
Unique NamemRNA_A-nodosum_M_contig823.3.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig823.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig823contigA-nodosum_M_contig823:15869..16750 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size605
Hectar predicted targeting categoryother localisation
Exons2
Cds size333
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870152.2823014-UTR-A-nodosum_M_contig823:15868..159111680870152.2823014-UTR-A-nodosum_M_contig823:15868..15911Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig823 15869..15911 +
1680870152.295473-UTR-A-nodosum_M_contig823:16188..164171680870152.295473-UTR-A-nodosum_M_contig823:16188..16417Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig823 16189..16417 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870153.4511478-CDS-A-nodosum_M_contig823:16417..167501680870153.4511478-CDS-A-nodosum_M_contig823:16417..16750Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig823 16418..16750 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig823.3.1prot_A-nodosum_M_contig823.3.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig823 16418..16750 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig823.3.1

>prot_A-nodosum_M_contig823.3.1 ID=prot_A-nodosum_M_contig823.3.1|Name=mRNA_A-nodosum_M_contig823.3.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=111bp
MQTNWRETVRWKSREITRERKSGVVTIKQAVIRISSVTIRWERRKKSKME
GRKNGVACNNSTNHSNQECFQQRSSSNCKGSDGRNSEEHETYVVDSTAVG
CKSCCCSNKR*
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mRNA from alignment at A-nodosum_M_contig823:15869..16750+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig823.3.1 ID=mRNA_A-nodosum_M_contig823.3.1|Name=mRNA_A-nodosum_M_contig823.3.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=882bp|location=Sequence derived from alignment at A-nodosum_M_contig823:15869..16750+ (Ascophyllum nodosum dioecious)
GGGGCACTGCCACTATTGACGGGCTAGGGTCGTTCCTCTCTGAGTGAGTA
TGGGTGTTTCGGAGGTGGTTACTCCTTTGGTGTTTGAGCGATGCGGTCTA
GCGGCAGTCGGATGGAGACTAAGATAGAAGTGGGCTGCGGAGTTTTGAGT
GGCACGTTGTGCGTGTTGTACTCTCTCCTCGTCGTGACGGTTGAGCCAGA
GCTCGAGAGAGAATTCAGATAGCGTTGCCGTTTGACTGTCGAGCTTTGCG
TCGTCGAGTTCTTGCACGTCTTTTGTTATTTTGTCCTCCTACCCCCCGAT
CTTCTCCCTCGCGATGCCAGGCACCTGGGGACGAGCATTACCGAGGCTCT
CGACGAGTTTAACTCGAAGCTAGGGGGAGTTGTGAGGATGGAACTGAAGG
AGGTGACCTCGGCGCGTCTTCGCCTCAAATCCTCGGCGTCAAGGTGCGTC
GTGCGTTCAAAAAGCGATTCCCCAAGTTCTCGGAGGCGGCTTCCTTTTGT
TGTCGCTTTGAATGGACGAAAGCAAGAAAGCAGGTGACAAAGTAAGAGAA
TGCAAACAAATTGGAGAGAGACTGTGAGATGGAAAAGTCGCGAAATCACG
AGAGAGAGAAAAAGTGGTGTAGTTACCATAAAACAAGCAGTCATTCGGAT
AAGCAGTGTTACCATTAGATGGGAAAGACGGAAAAAATCAAAAATGGAAG
GCAGAAAAAATGGTGTAGCTTGCAACAATAGCACGAATCATTCAAACCAA
GAATGTTTTCAGCAGAGAAGTAGCAGTAACTGTAAGGGCAGTGATGGTAG
AAATAGCGAAGAACATGAAACATATGTTGTAGACAGCACAGCCGTGGGCT
GCAAGTCGTGTTGCTGTAGTAACAAACGGTAA
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Coding sequence (CDS) from alignment at A-nodosum_M_contig823:15869..16750+

>mRNA_A-nodosum_M_contig823.3.1 ID=mRNA_A-nodosum_M_contig823.3.1|Name=mRNA_A-nodosum_M_contig823.3.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=333bp|location=Sequence derived from alignment at A-nodosum_M_contig823:15869..16750+ (Ascophyllum nodosum dioecious)
ATGCAAACAAATTGGAGAGAGACTGTGAGATGGAAAAGTCGCGAAATCAC
GAGAGAGAGAAAAAGTGGTGTAGTTACCATAAAACAAGCAGTCATTCGGA
TAAGCAGTGTTACCATTAGATGGGAAAGACGGAAAAAATCAAAAATGGAA
GGCAGAAAAAATGGTGTAGCTTGCAACAATAGCACGAATCATTCAAACCA
AGAATGTTTTCAGCAGAGAAGTAGCAGTAACTGTAAGGGCAGTGATGGTA
GAAATAGCGAAGAACATGAAACATATGTTGTAGACAGCACAGCCGTGGGC
TGCAAGTCGTGTTGCTGTAGTAACAAACGGTAA
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