mRNA_A-nodosum_M_contig823.2.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig823.2.1
Unique NamemRNA_A-nodosum_M_contig823.2.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
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BLAST of mRNA_A-nodosum_M_contig823.2.1 vs. uniprot
Match: D7FW85_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FW85_ECTSI)

HSP 1 Score: 139 bits (349), Expect = 3.670e-31
Identity = 192/562 (34.16%), Postives = 236/562 (41.99%), Query Frame = 2 
Query:    5 MQGVSSVLDAVSRTVEPKPGELVEESSPPSASRDDLSEAADRAETHDDSEEGPKSKTHTAC------DRGQGASHDSSRSSSSS--PDPFDRISNMARSSLAGSLKLVSAATRGVGDAVFQAGTVAEDLAGGTGQVAEDVVRVVQGAVGRARDDALKSGNR------NDAEEGQTESESGKWRSSPSELQAAASPESTSAGGEDAETTSATAP-----GVMRVWKLCRETGAFALMMLEEALREVVGLFRSKNGALPSAPHHAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXA---SPGLASSSRSLFPH------TPMSSANGQLPSFGTHDGAP--DGLDALLPSPAQALARVPHARAGRTRTAGRGELATGLVHEEIDVEGAAATTSRRAASEEEATRGLWDWRRVFRWTGLRRPRGEGIVRWRWILLVLL*FSASVLEERERDRVAWLVWDEGFRAGEASRVGDSDAAAESVA*VNSLIDGLWGGQRSGLHPRTSGVG-----------VARGTATIDGLGSFLSE 1567
            + G+SS+LDA SR V+          SP +A    LS  AD A +HD +  GP + + +A       D   GA+  + RSSS    PDPFDRI ++A +SLAGSLKL+SAA  GVGDAVFQAG +AE LAGGTGQVAED VRVVQ  VG ARDD +K  NR      +D  +       GK     +      +PE      E    T   A       V+  W+  R+ G  A+   E  +R+  GLFR KNGALP AP  A            XXXXXXXXXXXXXXXXXXX                              A   +  L S SRSLF        TP   A G   +  T++  P  DG+D  LPSPAQ                                                                                            ERERDR AWL WDEG+R G+ASR  D  A AE+ A +N ++   WGG +  +    +GV            V  G    DGL SF++E
Sbjct:   23 VNGLSSILDAASRGVKAHV-------SPANAQPPTLS--ADPARSHD-AGGGPAAGSSSASPDDSGEDTAPGATGQTGRSSSQGGDPDPFDRIGSVALTSLAGSLKLLSAAVGGVGDAVFQAGVLAEGLAGGTGQVAEDTVRVVQRFVGWARDDMVKLNNRRGQGGHHDVRKNVDAPGPGKRPPPATPPVGVRTPEPAPHAAEKDGFTPDPALVSDGLSVLEAWEGVRDLGRLAV---EALVRQAAGLFRLKNGALPPAPRIAALILLTVFIYDRXXXXXXXXXXXXXXXXXXXSPREPQRSSVARRDLRERGDGNRGPPSTAVAFDLAASLHSPSRSLFSRLRQAAGTPPLRAPGSPWTRRTYEVVPQPDGVDPSLPSPAQ--------------------------------------------------------------------------------------------ERERDRAAWLAWDEGYRRGQASRALDPAAEAETTAWLNHILASAWGGTKRVVPTGFAGVNGIAGGRDVHGCVVTGMLAADGLSSFVAE 479
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BLAST of mRNA_A-nodosum_M_contig823.2.1 vs. uniprot
Match: A0A6H5L2G9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2G9_9PHAE)

HSP 1 Score: 114 bits (285), Expect = 4.220e-23
Identity = 133/350 (38.00%), Postives = 163/350 (46.57%), Query Frame = 2 
Query:  605 VMRVWKLCRETGAFALMMLEEALREVVGLFRSKNGALPSAPHHAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXASPGLASSSRSLFPH------TPMSSANGQLPSFGTHDGAP--DGLDALLPSPAQA---LARVPHARA----GRTRTAGRGELATGLVHEEIDVEGAAATTSRRAASEEEATRGLWDWRRVFRWTGLRRPR--GEGIVRWRWIL-LVLL*FSASVLEERERDRVAWLVWDEGFRAGEASRVGDSDAAAESVA*VNSLIDGLWGGQRSGLHPRTSGVG-----------VARGTATIDGLGSFLSE 1567
            V+  W+  R+ G  A+   E  +R+   LFR KNGALP AP  A            XXXXXXXXXXXXXXXX                                 AS  L S SRSLF        TP   A G   +  T++  P  DG+D  LP+P+QA   LAR   AR     G TR  G GE   G V  E  V   AA++ R       ++ G   WRRV  WT  R PR  G G    R++L L  L   ASVLEERERDR AWL WDEG+R G+ASR  D  A AE+ A +N ++   WGG +  +    +GV            V  G    DG+ SF++E
Sbjct:   66 VLEAWEGVRDLGRLAV---EALVRQAASLFRRKNGALPPAPRIAALILLAIFIYDRXXXXXXXXXXXXXXXXREPQRSSVARRDLGERGDGNRGPPSTAVAFDLTAS--LHSPSRSLFSRLRQAAGTPPLRAPGSPWTRRTYEVVPQPDGIDPSLPTPSQARAALARTGQARRSLMPGLTRRRGGGE---GEVERERSVP-MAASSGRGVERGTTSSVGWGWWRRVRGWTRCREPRRAGGGSGGRRYMLWLFALWLVASVLEERERDRAAWLAWDEGYRRGQASRALDPAAEAETTAWLNHILASAWGGTKRVVPRGFAGVNGIAGGRDVHGCVVTGMLAADGMSSFVAE 406
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BLAST of mRNA_A-nodosum_M_contig823.2.1 vs. uniprot
Match: A0A6H5L3C8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3C8_9PHAE)

HSP 1 Score: 84.0 bits (206), Expect = 7.230e-15
Identity = 67/140 (47.86%), Postives = 84/140 (60.00%), Query Frame = 2 
Query:    5 MQGVSSVLDAVSRTVE----PKPGELVEESSPPSASRD--DLSEAADRAETHDDSEEG--PKSKTHTACDRGQGASHDSSRSSSSSPDPFDRISNMARSSLAGSLKLVSAATRGVGDAVFQAGTVAEDLAGGTGQVAEDV 400
            + G+SS+LDA SR V+    P   +    S+ P+ S D    S A   + + DDS E   P +K HT    GQG            PDPFDRI ++A +SLAGSLKL+SAA  GVGDAVFQAG +AE LAGGTGQVA ++
Sbjct:   81 VNGLSSMLDAASREVKADVSPANAQPSTLSADPTRSHDAGGGSAAGSSSASPDDSGEDTVPVAKGHTGRSSGQGGD----------PDPFDRIGSVALTSLAGSLKLLSAAVGGVGDAVFQAGVLAEGLAGGTGQVAGEL 210
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig823.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FW85_ECTSI3.670e-3134.16Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L2G9_9PHAE4.220e-2338.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L3C8_9PHAE7.230e-1547.86Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig823contigA-nodosum_M_contig823:13259..15912 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1567
Hectar predicted targeting categoryother localisation
Exons3
Cds size1311
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870153.709054-UTR-A-nodosum_M_contig823:13258..132621680870153.709054-UTR-A-nodosum_M_contig823:13258..13262Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig823 13259..13262 +
1680870153.7463725-UTR-A-nodosum_M_contig823:15250..152711680870153.7463725-UTR-A-nodosum_M_contig823:15250..15271Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig823 15251..15271 +
1680870153.758522-UTR-A-nodosum_M_contig823:15681..159121680870153.758522-UTR-A-nodosum_M_contig823:15681..15912Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig823 15682..15912 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870153.7246873-CDS-A-nodosum_M_contig823:13262..136501680870153.7246873-CDS-A-nodosum_M_contig823:13262..13650Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig823 13263..13650 +
1680870153.7347202-CDS-A-nodosum_M_contig823:14327..152501680870153.7347202-CDS-A-nodosum_M_contig823:14327..15250Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig823 14328..15250 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig823.2.1prot_A-nodosum_M_contig823.2.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig823 13263..15250 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig823.2.1

>prot_A-nodosum_M_contig823.2.1 ID=prot_A-nodosum_M_contig823.2.1|Name=mRNA_A-nodosum_M_contig823.2.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=437bp
MQGVSSVLDAVSRTVEPKPGELVEESSPPSASRDDLSEAADRAETHDDSE
EGPKSKTHTACDRGQGASHDSSRSSSSSPDPFDRISNMARSSLAGSLKLV
SAATRGVGDAVFQAGTVAEDLAGGTGQVAEDVVRVVQGAVGRARDDALKS
GNRNDAEEGQTESESGKWRSSPSELQAAASPESTSAGGEDAETTSATAPG
VMRVWKLCRETGAFALMMLEEALREVVGLFRSKNGALPSAPHHAALIILV
LVICRGRRRPLQNDSSQQQQQQQLYLQSAEMAPPTTSQRSHAVAGQEPPS
ARAAAASPGLASSSRSLFPHTPMSSANGQLPSFGTHDGAPDGLDALLPSP
AQALARVPHARAGRTRTAGRGELATGLVHEEIDVEGAAATTSRRAASEEE
ATRGLWDWRRVFRWTGLRRPRGEGIVRWRWILLVLL*
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mRNA from alignment at A-nodosum_M_contig823:13259..15912+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig823.2.1 ID=mRNA_A-nodosum_M_contig823.2.1|Name=mRNA_A-nodosum_M_contig823.2.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=2654bp|location=Sequence derived from alignment at A-nodosum_M_contig823:13259..15912+ (Ascophyllum nodosum dioecious)
GTCCATGCAGGGGGTGTCCTCCGTGCTTGACGCAGTGAGCCGCACCGTGG
AGCCTAAACCCGGAGAGCTGGTCGAGGAATCGTCGCCGCCTTCGGCGAGC
CGCGACGATTTGAGCGAGGCGGCCGACCGCGCCGAAACTCATGACGATTC
CGAAGAAGGACCAAAGTCTAAGACTCATACAGCTTGCGACCGGGGCCAAG
GTGCGAGTCACGACAGCAGCAGGAGTAGTAGCAGCAGTCCGGATCCGTTT
GATCGGATATCGAACATGGCGCGGAGTTCCCTGGCCGGTTCGCTGAAGCT
GGTGAGCGCGGCCACGCGCGGGGTCGGTGATGCCGTGTTCCAGGCGGGAA
CGGTGGCGGAGGACCTGGCGGGGGGCACCGGTCAGGTCGCAGGTGAGACA
GGCCGGAGGTTGTGTTGTGCAGCGTCGTGGCGCCCGGCACCAGGTGATAC
CGTGTCATGTTTTATAATACATGGCGTGGTGAAACCAACCCCCATCTAGA
TTCATATCGGGAGATTGCTGTGGTTGTTTAAAGAAAAATCAGAACGCGTC
TAGACCTTCTGAGCATCCCCCAGTCAGGGGGAAAAAATGTCAAAACGTTT
AGGTGGGATCAAAGGCTGCAAATACAAAACCTCTTCATGTGTTGTTTCTC
ACATTCAGCGTATTGGTTGCCAACCCGAAAAAACTTTTTTATACGGTGGC
CAATCCCGCTCGTCGTCTGCTGAACAGGGAAAAGAGAACAAAAATATAAA
TTCTGGCAGCGCACTTCCCCCGATGCTGGTCGTACGGAGGAAATAAAATA
AAAATAAAACACAGGGGGCGTACAACAAAGATAGCAAAGATAACATCGAA
AAGTCCTGAAGATTATATCTTCCGCCTATTAATAGAAACAGTAATATGAT
ATGATATGAAAGGAGAATCGTTTGGGATGCAATGTGTTTTTTTAACCGTT
CACACCATCTACCCCATGCTTACTCACGTGATGTTGTCGTGGGCCATCTC
TTTACCGACTACGACTCGCCTTCCTTCACGCGTGACTGCGGCCGCACTTG
GGCGGCATCCTCGATCCAGAGGACGTTGTTCGCGTGGTGCAGGGGGCGGT
AGGCCGGGCCAGGGACGACGCGCTCAAGTCCGGCAATCGTAATGATGCTG
AGGAAGGTCAGACCGAAAGCGAGTCAGGAAAATGGCGATCATCGCCGTCA
GAACTTCAGGCCGCCGCATCGCCGGAGTCGACGTCTGCTGGCGGTGAAGA
CGCAGAAACGACGTCGGCGACAGCACCAGGGGTAATGAGGGTTTGGAAGC
TGTGCAGGGAGACGGGCGCGTTCGCCCTGATGATGCTCGAGGAAGCGCTG
CGGGAAGTTGTGGGGCTGTTCCGTAGCAAAAACGGCGCCCTCCCGTCTGC
ACCCCATCACGCCGCTTTGATCATACTTGTGCTTGTCATTTGTCGAGGCC
GTCGCCGTCCTCTTCAAAACGATTCTTCACAGCAGCAGCAGCAGCAGCAG
CTCTATTTGCAATCTGCTGAGATGGCGCCACCGACGACTTCCCAGCGAAG
CCACGCCGTCGCCGGGCAAGAGCCGCCTTCAGCACGGGCAGCCGCGGCAT
CGCCCGGTCTCGCCTCCTCATCTCGTTCGCTCTTCCCCCATACGCCAATG
TCATCTGCCAACGGGCAGCTACCGTCTTTCGGGACCCATGACGGTGCGCC
GGACGGTCTGGACGCTCTTCTCCCGTCGCCCGCGCAAGCTCTAGCGCGAG
TGCCTCACGCGCGGGCCGGGCGGACGAGAACTGCGGGTCGGGGAGAACTG
GCAACGGGATTGGTTCACGAGGAAATCGACGTGGAAGGTGCCGCCGCGAC
GACGTCTAGAAGGGCTGCGTCGGAGGAGGAAGCGACCCGCGGCCTTTGGG
ACTGGCGCCGGGTCTTCCGATGGACTGGACTGCGTCGGCCGCGAGGAGAG
GGAATCGTTCGATGGCGCTGGATTTTGCTCGTGCTGCTATGATTTTCGGC
GTCCGTGCTCGAGGTACGGAATTGATCAGACCTGAGTAAGCGCCGGCAGT
TCGAACGTTTCTGTTTCGCTTGAGGAGAGGGGGGGAAAGAGGTGGAGACC
AGGGTTCGCCATCCACTGATCGGTTGTGTAGCGTCGCGGAACGCCTTTAT
AACTCCGTTGGGGAGGCAAAAGCGTCTTGGAAGATAGGCTTCATTCGCGG
TAGCGTTATCCCCCACACTCCCCCCGGTTTACTCCTGTCCGTGAACCGTT
TTTTTGACCTGGAAGGTAGCTTACACTCCGCTCGTCTGGGTACTTGACGA
ATCTCAACCGCCTGACGGCATCGTCACCGCCAACATGCGAGTCATGAACA
ATACATAATCATTGAACCAAGTTTTCGCGGATGCTTAACTTGCTCCCGTC
CTCCACGTTTACCTCATTCGCAGGAAAGAGAGCGGGACCGCGTGGCGTGG
TTGGTGTGGGACGAGGGTTTCCGTGCGGGCGAGGCTTCTCGGGTAGGGGA
TTCCGACGCGGCCGCAGAGAGCGTGGCGTAGGTCAACTCTCTGATCGACG
GCTTGTGGGGCGGGCAACGGTCGGGGCTGCACCCCAGGACAAGCGGTGTC
GGTGTCGCGCGGGGCACTGCCACTATTGACGGGCTAGGGTCGTTCCTCTC
TGAG
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Coding sequence (CDS) from alignment at A-nodosum_M_contig823:13259..15912+

>mRNA_A-nodosum_M_contig823.2.1 ID=mRNA_A-nodosum_M_contig823.2.1|Name=mRNA_A-nodosum_M_contig823.2.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=1311bp|location=Sequence derived from alignment at A-nodosum_M_contig823:13259..15912+ (Ascophyllum nodosum dioecious)
ATGCAGGGGGTGTCCTCCGTGCTTGACGCAGTGAGCCGCACCGTGGAGCC
TAAACCCGGAGAGCTGGTCGAGGAATCGTCGCCGCCTTCGGCGAGCCGCG
ACGATTTGAGCGAGGCGGCCGACCGCGCCGAAACTCATGACGATTCCGAA
GAAGGACCAAAGTCTAAGACTCATACAGCTTGCGACCGGGGCCAAGGTGC
GAGTCACGACAGCAGCAGGAGTAGTAGCAGCAGTCCGGATCCGTTTGATC
GGATATCGAACATGGCGCGGAGTTCCCTGGCCGGTTCGCTGAAGCTGGTG
AGCGCGGCCACGCGCGGGGTCGGTGATGCCGTGTTCCAGGCGGGAACGGT
GGCGGAGGACCTGGCGGGGGGCACCGGTCAGGTCGCAGAGGACGTTGTTC
GCGTGGTGCAGGGGGCGGTAGGCCGGGCCAGGGACGACGCGCTCAAGTCC
GGCAATCGTAATGATGCTGAGGAAGGTCAGACCGAAAGCGAGTCAGGAAA
ATGGCGATCATCGCCGTCAGAACTTCAGGCCGCCGCATCGCCGGAGTCGA
CGTCTGCTGGCGGTGAAGACGCAGAAACGACGTCGGCGACAGCACCAGGG
GTAATGAGGGTTTGGAAGCTGTGCAGGGAGACGGGCGCGTTCGCCCTGAT
GATGCTCGAGGAAGCGCTGCGGGAAGTTGTGGGGCTGTTCCGTAGCAAAA
ACGGCGCCCTCCCGTCTGCACCCCATCACGCCGCTTTGATCATACTTGTG
CTTGTCATTTGTCGAGGCCGTCGCCGTCCTCTTCAAAACGATTCTTCACA
GCAGCAGCAGCAGCAGCAGCTCTATTTGCAATCTGCTGAGATGGCGCCAC
CGACGACTTCCCAGCGAAGCCACGCCGTCGCCGGGCAAGAGCCGCCTTCA
GCACGGGCAGCCGCGGCATCGCCCGGTCTCGCCTCCTCATCTCGTTCGCT
CTTCCCCCATACGCCAATGTCATCTGCCAACGGGCAGCTACCGTCTTTCG
GGACCCATGACGGTGCGCCGGACGGTCTGGACGCTCTTCTCCCGTCGCCC
GCGCAAGCTCTAGCGCGAGTGCCTCACGCGCGGGCCGGGCGGACGAGAAC
TGCGGGTCGGGGAGAACTGGCAACGGGATTGGTTCACGAGGAAATCGACG
TGGAAGGTGCCGCCGCGACGACGTCTAGAAGGGCTGCGTCGGAGGAGGAA
GCGACCCGCGGCCTTTGGGACTGGCGCCGGGTCTTCCGATGGACTGGACT
GCGTCGGCCGCGAGGAGAGGGAATCGTTCGATGGCGCTGGATTTTGCTCG
TGCTGCTATGA
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