|
|
Homology
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Stop | 1 |
| Start | 1 |
| Model size | 1514 |
| Hectar predicted targeting category | other localisation |
| Exons | 5 |
| Cds size | 1131 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1680870148.2865832-UTR-A-nodosum_M_contig821:214890..214969 | 1680870148.2865832-UTR-A-nodosum_M_contig821:214890..214969 | Ascophyllum nodosum dioecious | UTR | A-nodosum_M_contig821 214891..214969 + |
| 1680870148.2982807-UTR-A-nodosum_M_contig821:217011..217206 | 1680870148.2982807-UTR-A-nodosum_M_contig821:217011..217206 | Ascophyllum nodosum dioecious | UTR | A-nodosum_M_contig821 217012..217206 + |
| 1680870148.3689523-UTR-A-nodosum_M_contig821:221490..221599 | 1680870148.3689523-UTR-A-nodosum_M_contig821:221490..221599 | Ascophyllum nodosum dioecious | UTR | A-nodosum_M_contig821 221491..221599 + |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1680870148.3160207-CDS-A-nodosum_M_contig821:217206..217610 | 1680870148.3160207-CDS-A-nodosum_M_contig821:217206..217610 | Ascophyllum nodosum dioecious | CDS | A-nodosum_M_contig821 217207..217610 + |
| 1680870148.3277242-CDS-A-nodosum_M_contig821:218632..218777 | 1680870148.3277242-CDS-A-nodosum_M_contig821:218632..218777 | Ascophyllum nodosum dioecious | CDS | A-nodosum_M_contig821 218633..218777 + |
| 1680870148.3386679-CDS-A-nodosum_M_contig821:220145..220313 | 1680870148.3386679-CDS-A-nodosum_M_contig821:220145..220313 | Ascophyllum nodosum dioecious | CDS | A-nodosum_M_contig821 220146..220313 + |
| 1680870148.3561664-CDS-A-nodosum_M_contig821:221076..221490 | 1680870148.3561664-CDS-A-nodosum_M_contig821:221076..221490 | Ascophyllum nodosum dioecious | CDS | A-nodosum_M_contig821 221077..221490 + |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_A-nodosum_M_contig821.22.2 >prot_A-nodosum_M_contig821.22.2 ID=prot_A-nodosum_M_contig821.22.2|Name=mRNA_A-nodosum_M_contig821.22.2|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=377bp
MSDAIATGSGRGYLSRFQRDGTARAEASQLEHSPVSATGDARKMRSPPSR
GQTAARGVIAAGSDRGHAAGSRRGSAAGFETSQQVRSRVSAAGYPHIFFS
SMGWTTAGVVVDAARSARKSHEKRRQETMMALMARQRRQAALAKRRKEAE
EEREDEQVQLALEVRRSNGGGVPREGRRSPRVRVSHAARGPEPPPANVNT
VDANRDGGEGGDRERGGGEAASVEMNMSLEDTLQFIMETWRNRPGRLLVR
QTWRRATGRTGFLCRFLLLQSPLCYLQWMQQSGILRRPTMPRHLQRWMDP
GMFRLYHDRNQLRRNKSRLFPRQMYLSEWRSRPGRLLLCRTCIRVTGRTR
FHRGRRSLNRNRWSFRRENMMSYCSP* back to topmRNA from alignment at A-nodosum_M_contig821:214891..221599+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_A-nodosum_M_contig821.22.2 ID=mRNA_A-nodosum_M_contig821.22.2|Name=mRNA_A-nodosum_M_contig821.22.2|organism=Ascophyllum nodosum dioecious|type=mRNA|length=6709bp|location=Sequence derived from alignment at A-nodosum_M_contig821:214891..221599+ (Ascophyllum nodosum dioecious)
CACCGGGGCGGAGCTGGATCGTCGGATCCGAGAGCGTTCGAAGCAGGCGG
GGCTCAAGATCGCGGCCCAGCGTGCGAAGGTCAGATGCCGTGTTTGTAGT
GCCGATTCCCCCAACAGCACCTCTTCGAAGAAAAAGACGGTGTATCTCAT
GTGATGTGTCGTTTAAAGCTTTTGGAACCTCGTGACTTCTGTTCTGCCGC
GTTTTGTTGCTCTTGGGGGCATCATATTATCTAGATACTATTTATAGCGC
TCTGTTGTTGTTTGTTGTCTATCCTATTCTTAACTTAATTTCTCTATAGA
ATTATCACTGTTTAGTTTGGAATGCTTAGTCCAATAATACTGTTAAATAA
CTAGTCTCCTTTTGTTTTGGTGTCCCTACATGGTGATTAATGTAAGTGTA
CAGTGTAACGGTGGGCTTCTCCCCGATATTATACTGTTGACCCTATGTGA
TTCCATTGGGGAACCCTTTTAATACAATGTAGAGTTTTTGTCCCTACAGC
CATTGTTCCCACCTAAACCTTTTGACTAATAATTGGAAGGTTTAGATGCG
TTCAGATTTTTTCTAAACCGATCCGCTACGAATCAAGCAGCCGTGGTCAC
AACATAGATGGGACCAGTCCGCATCAAACCGGGAACACGTTTGGAGAAGA
AAAAAAAAACAGGGAAAGCAAACAGAAGAAAACGGACAAGAAAGTAGCCA
ACAAAGGACATCGTCGCCAGGAAGGAACACAGAACAAAAGCAAACAAATA
AAATAAAAATATACAGCAAGAAACAAAAACACGAGCAAAATAAAATAATG
GAAGGTCTCTGAGCGGGATGGGTCTCACACGGAAGAGGTGGTGCTGTACT
GGGCGTTGGTTGAGCAGGCTCGACATGAACACATGTCAGATGAGTATAAA
AACCAGCATATTATTGTTGTGTTGCCGTAGCCCACATCTTGGGTCATAGA
CGGGACAACACGAGATCACCACATTGGTCCCCAGCGGATTGATCAAGGGT
GAGAAGTCAAGCGGAACTGACAAGTATGGAGCGAGGAACCCAGTTCTTTC
CGCTTGCCTCTTACCGCCTTGTGTGATCGCCTACTGCTCTTCGTCTACTT
CCAGGTGAATAACGGGGTCGTGTACTTGGATTATGAAGGTTCTCATCATC
ATGGTCCTCTGCTGTGCTCGTTTCAATTGTTGTGTTGGATTTGTCTTTAT
TGTTTGATGATGTACCGTATTGTTTTGTCTTCCCTTTTGTTGGTGTCCCT
GCATGGCGATTAATGTAAGTGTACAGTATGACGGTGGGTTTCTCCCCGGC
ATTATACTGTTGACCCAATGTTATTACCATCGGGGAACCCGTTTAAATGC
CATGAAGAGGTTTTGTATTTTCAGCTATTGATCCCACCTAAACGTTTTGA
CATTTTTTCCCCCTGACTGGGGGATGCTCAGAAGGTTTAGGTGCATTCAG
ATTTTTCTTCAAACATTCATCTCCCAAACACGTATCGTAGATCGACTACT
GAGACTATCATGCATCTTATTGGTCAGAATATTCTACTAATCAATCTATC
CGCGTCTCGGAATCGACTTCTTCCAGAAAACACGGACAAAGAAACAAACA
AAAGGCAACTACATAATACGCCTAGGGCAAGAAAAACACCCTCCCCAGCA
AGCAACTATAAATATAACACGCAAGAAAGGCAGTCATGTAAGTAGCGGAA
TACAACTCGACAGGAGCAAGAACAACGAATGCGACACACACAGTAATCAA
ATGAAAGAATAACACAGAAGGAGGAAAGGGGGACAATAGTCAACCAATCA
AATCAAGTAAAATGATTAGGTATACAGACACAGGGAGAAGCATCGCGATG
GGTTAACTGCCCAAAAATGAAATAGGAGCAGAACCCTGTGCGTAAATTCA
ACTGAGTGCTAAAAAAATGTTGAAAATGACCCCTCGCTTCCGCTCGGGTG
GGAAATTGGAGAGGGCAAACAGCAGCGAGGGTTGACAAAAAAAACGAATA
TTACTTCTACTAGTGTAGGGAGGATCGTGTCCACCGTGGATTGGCGACCT
ATCCCATCTTGTACTTCGCAGAACGAACTACATTCGTCTTGCTTTCCATG
GCGTCGTTACCGCTTTGCCAGGAGCACGAAGCGCGCGAGGAGGCCACGAG
ACGCAAGATCGCTGCCAAAGACTTGGCGAATCAAATCCGACGAAAAAATA
CCGCAAAGTTCCGGCGAGATCGTTCCGCGAGGGTGGGGCATAGCCAGTGC
GAGGGTCATGGGGTGAGTAGGACTGGGGGTCCACGGAGAGTTCCCTCCCC
CTCTTCAAGTGCACCTATGTCCGACGCAATAGCGACGGGGTCTGGCAGGG
GATATCTCTCGAGATTCCAGAGGGATGGCACTGCGAGAGCCGAGGCAAGC
CAGCTCGAGCATTCCCCGGTCAGCGCGACTGGAGATGCACGAAAAATGCG
CTCCCCTCCTTCTAGAGGACAAACCGCGGCAAGAGGTGTAATCGCGGCCG
GGTCTGATAGGGGACATGCCGCGGGATCACGGAGGGGCAGTGCTGCTGGG
TTCGAAACGAGCCAGCAAGTACGTTCCAGGGTGAGCGCGGCTGGGTATCC
ACATATATTTTTCTCTTCTATGGGATGGACCACCGCCGGAGTTGTTGTGG
ATGCGGCCAGGTCAGCTCGGAAGTCCCACGAGAAAAGAAGACAAGAAACG
ATGATGGCGCTCATGGCCAGGTATCGCGCGTGCACAAATATTTTGGGAGG
ATGGCTGTACTGCTGTGAAGCGAGGACGCGTTTGTGGTCTGGTCACAATT
ATTTATTTTGAAATTTGCTTGATTTTATCTATTTTTGGAGGGGGGGAGGG
GTCGTAAAGCGATTAGTTTACATTTGTTTGGGCTTTTGGTGATGTGATCG
TTTTCACTCACCTCATTTTGTTGTTGCTGTTGTTGTAAATATTTCACTTA
GTTTTGAGTTTTTTTTTAATCGAATTCCTTGTAACAAATTTACTAGAAAA
TGTATTAACCAATTAATTTATTTATTATTTTATTTATTTATTTTATTTTT
CGTTAATTCATTTATTTATTCATTTATATATTTACTATTTATTCACTATT
TCCTTATTGATCCGGGCTTTTTTCCTTTTTAATTTGTTGCTTCACGGAGT
GCTCATTATACATATGCCGAAGTTAATCATTCTTCTCGTTCACTCGTCTA
CCTTTTGTATCTTTCAACTGTTCCCAAATATAATATAATCAACATTACGA
GTTTGTTTTTTCCATGTTTTTTTTTTACCTCGAAGTTTATTGTCGTGGAA
TTGTTTTTTAAACGACGAATTGTTTTTTTTTCTTCTTCTACTGAACGTGC
CTTGAAATACCCTTGTCCCCGACATTATACTGTTGAAATGACACAATGAT
ACTATTAATACCATCGGGGAACCCACTTAATTCCCATGAAGAGGTTTTGT
ATTTGCAGCCTATGATCCCACCTAAACGTTTTGACATTTTCCCCCCTGAG
TGGGGGATGCTCAGAAGGTCTAGGCGCGTTCTGATTTTTCTTTAAAAAGC
CTCCACTCCTTTTTTTTTCTCGCTTGAAAGGACTCCTACCGGTATATAAT
AGTTGGAATATAAAGAAGAATAGTATGTTGGAAGTAGTTCTACCACATTA
GCTGTTACATGTTGTGATAACGCACCCGACCCTAAAGAAAGGCAATAATA
TTTTACTGTACACGATTTGCCGACGATTGTGCGCCTTGGTAGGCAAAGGC
GGCAGGCTGCTCTCGCTAAGCGACGGAAAGAGGCGGAAGAGGAGCGAGAA
GACGAGCAAGTGCAACTCGCCTTAGAGGTTCGCAGGAGCAATGGAGGAGG
TGTCCCACGAGAGGGACGAAGGTCTCCACGAGTGAGGGTGAGAACGTTGA
TTGTATGCTGGCGAGTTGCCCTATTGATAGCATTCGCTCAGCTCTTGAGG
TACCGGTACACCTTGCCGAGTGAATCAGTCAGTTGCCGTGAACTCACGTG
TTTCTGCCTTCCAGCGGTGTATGCTGGCGGGCGGGAAGGAACGATACCGG
TAACAAGGATTCTGAAGGCGCCGTCGATGCTTGTACCCAAAGAATAAAAG
ACAAGACAATCGAGTCTAGACATTGACCTTGACTTTTTATTTTTGTTTGA
AAGGGCTGACATACAAAGCAAAGAAATTTAAGGGCTGTGGCATTTGAGAC
ACAACGGATAGTGACATCGCTTGGCGTACATACTATAGTACCCAATACAA
AAGCTCTAATATATAATATATAGAGCTCTAATATATAATATACAATACCT
CTGAGTGAACCGTGCCTCACCCTTGTTGGTGAAAGCTTTGATGACAAAAG
CTCCTCGAGGCGTAGCGCGCCGGAGAAAGGGTTGGTCAGGAATGCTCATT
GATAGTAACTTTAGTGCGGAATTTACCCGGCATGACCCCTGTGAGCGATT
TTATAGCAAGTGCTTCGTCGCGATTTTCTGTGGACGCCGTGTCGGCTGGT
TTGCGGATCCCTAGCTCGCTCGTTTTGCGAGAACTCTTGTACAAGTATGT
TGAATCCATGGAGTGCGTGACGCCCTCCAGTAGTTCCTGTTGTTCACCGT
GATTTTGCGAATGTTCACCCCTGCGCGAACGGTTTTTATGGGATTTTTCT
GAGCATTTCCTGAGCGGGAATAATTTTCTACCTGGTATCTTACACGTTCC
ATTCTTCACCATCCCTACCCTGGTCGAAATTTGGATGAAGCCAATCGTAC
TCCTTTGTGCAAGATTTCACCTCTGATTGACAAGTCACGCCCAAAACAAT
TCAACACTCAATAACAGCAGCACTTGGACCTGTAAGCATTGACGTACAGA
ATTCCGTCGACGAAATAACGCCGTCGTTGTACGTGACAACTCCCGCGAAA
ACTGAGGGGCGCGATTGTATAGCTCACGCATTCCGGCAGCGCGGGGCGTT
GTGAAGCTTCTTACAGCTCTCCACGAATGAATGACGATATACTGTGTACG
CCTTCTCGCGGGGTAGAAGCCAATGCTTCGCCCGCGCGGTAGCTCTCCAA
GTGATCCATTGAAAGAAAACAAAAAAAGCGACGACCACAACAAAAAACAA
GGCGGTCTTCCGAGGAATGAATCACTGCGCCGTTTGATGTTTTATGTGTT
TTTCTTACGAATCAATCTTTCGCCTCGTTTTCGCAAAGAGCTGGCTCAAT
TTGCATTTCAAAGTCGTTTGTGGCGATAACACCCGGTACTCTCCATGCTT
CCCAGGTCTCGCACGCCGCCCGAGGGCCCGAACCACCTCCAGCCAACGTA
AACACCGTCGATGCCAACCGCGACGGAGGAGAAGGTGGCGATAGAGAGCG
GGGTGGTGGTGAAGCGGCTAGTGTCGAAATGAACATGTCGCTTGAGGACA
CGCTGCAGTTCATAATGGAGACAGTTCAGAAGACTACGCTGACGGTCCTG
GACCTCCAGAAGCAGTGCGCGCTTCTCTGTGAGGGTAAGATCGCGCAATT
GTTTTTTTCCCTTTGATCCTTTCTTTTGACATGGCAGGGCAACCCAAGAG
GTTGTTCAGCGTGCGCCTCGTGCAGAGGTAACGCTGTATTCAAATAATAT
GTACAACGGTAGTAAGCAACACCTTTAAGGACCTTCCCGAAAAGGTTTTG
TGTACAGATTTCTTTGGGGGTTGTCGGCTATCATTGAGATCGGATACGGT
TTTGAATACCAATTGCAAACATATCCTCGTCAGAAACGCTCTATATTGGC
GACCATATCTATTTTCCTTGAGGATTGGAAATATAGACTCGGACAGAATT
CCTCTAGTCGAGTGTGGAGCGTAAGCCAAAGCTCGTGTGCCGTGAGGGGA
TTGTGTGTTATCGAGTAGTTCGTAAGAATGAGGTTGAATATTTCTTTGTC
TGTCCACAAATCTAGAGACTCGAATGCAAGACAAGCACAGAAACAGGACC
TTTCACACATAATCGCTTGTCAATATCGGCCCTTTGTGAATTACCTTACC
TTATGGTTGCTGTTGCTGGCGTAATTCCTTGCATAGGAGCCATTTTTGAG
ACGAAGTACGAACCTCTCTCCGTTCACGCCTTTGCAGTGATCGATCGAAC
CAGGGGTGCTCCGCCTGCGCGACGACCGCAACCACTCGAGGAGAACCAAG
TTACATGTGTTCCACCTCCAGATGTACCTGTCGGAGTGGAGAAATCGCCC
CGGTCGCCTTCTTGTACGTCAAACGTGGAGACGAGCCACCGGCAGGACGG
GGTTTCTCTGCCGTTTCCTTCTTCTGCAATCTCCGTTGTGTTACCTCCAA
TGGATGCAGCAATCCGGAATTCTCAGACGACCAACAATGCCGCGGCATCT
TCAGAGGTGGATGGACCCAGGGATGTTCCGTCTCTACCACGACCGCAACC
AACTGAGGAGGAACAAGTCGCGGCTTTTCCCTCGCCAGATGTACCTGTCG
GAGTGGAGAAGTCGCCCCGGTCGCCTTCTTCTTTGTCGAACTTGTATACG
GGTCACTGGCAGAACGAGGTTTCATCGAGGCCGGCGATCTCTCAACCGCA
ACCGATGGAGCTTCAGACGAGAAAATATGATGTCATATTGCAGCCCTTAA
CTTCTCCACATCCAGTGGCTCAGCCCTGTCCTTCTTCTACAGTCTCCGTT
GGGTTGGCTCCAACGGGCGAAACAAGGCCGAGCTCCCCCACGACTAATGA
TGCCACGGC back to topCoding sequence (CDS) from alignment at A-nodosum_M_contig821:214891..221599+ >mRNA_A-nodosum_M_contig821.22.2 ID=mRNA_A-nodosum_M_contig821.22.2|Name=mRNA_A-nodosum_M_contig821.22.2|organism=Ascophyllum nodosum dioecious|type=CDS|length=1131bp|location=Sequence derived from alignment at A-nodosum_M_contig821:214891..221599+ (Ascophyllum nodosum dioecious)
ATGTCCGACGCAATAGCGACGGGGTCTGGCAGGGGATATCTCTCGAGATT
CCAGAGGGATGGCACTGCGAGAGCCGAGGCAAGCCAGCTCGAGCATTCCC
CGGTCAGCGCGACTGGAGATGCACGAAAAATGCGCTCCCCTCCTTCTAGA
GGACAAACCGCGGCAAGAGGTGTAATCGCGGCCGGGTCTGATAGGGGACA
TGCCGCGGGATCACGGAGGGGCAGTGCTGCTGGGTTCGAAACGAGCCAGC
AAGTACGTTCCAGGGTGAGCGCGGCTGGGTATCCACATATATTTTTCTCT
TCTATGGGATGGACCACCGCCGGAGTTGTTGTGGATGCGGCCAGGTCAGC
TCGGAAGTCCCACGAGAAAAGAAGACAAGAAACGATGATGGCGCTCATGG
CCAGGCAAAGGCGGCAGGCTGCTCTCGCTAAGCGACGGAAAGAGGCGGAA
GAGGAGCGAGAAGACGAGCAAGTGCAACTCGCCTTAGAGGTTCGCAGGAG
CAATGGAGGAGGTGTCCCACGAGAGGGACGAAGGTCTCCACGAGTGAGGG
TCTCGCACGCCGCCCGAGGGCCCGAACCACCTCCAGCCAACGTAAACACC
GTCGATGCCAACCGCGACGGAGGAGAAGGTGGCGATAGAGAGCGGGGTGG
TGGTGAAGCGGCTAGTGTCGAAATGAACATGTCGCTTGAGGACACGCTGC
AGTTCATAATGGAGACATGGAGAAATCGCCCCGGTCGCCTTCTTGTACGT
CAAACGTGGAGACGAGCCACCGGCAGGACGGGGTTTCTCTGCCGTTTCCT
TCTTCTGCAATCTCCGTTGTGTTACCTCCAATGGATGCAGCAATCCGGAA
TTCTCAGACGACCAACAATGCCGCGGCATCTTCAGAGGTGGATGGACCCA
GGGATGTTCCGTCTCTACCACGACCGCAACCAACTGAGGAGGAACAAGTC
GCGGCTTTTCCCTCGCCAGATGTACCTGTCGGAGTGGAGAAGTCGCCCCG
GTCGCCTTCTTCTTTGTCGAACTTGTATACGGGTCACTGGCAGAACGAGG
TTTCATCGAGGCCGGCGATCTCTCAACCGCAACCGATGGAGCTTCAGACG
AGAAAATATGATGTCATATTGCAGCCCTTAA back to top
|