mRNA_A-nodosum_M_contig82.74.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig82.74.1
Unique NamemRNA_A-nodosum_M_contig82.74.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
BLAST of mRNA_A-nodosum_M_contig82.74.1 vs. uniprot
Match: A0A329RB62_9STRA (Uncharacterized protein n=1 Tax=Phytophthora cactorum TaxID=29920 RepID=A0A329RB62_9STRA)

HSP 1 Score: 129 bits (324), Expect = 5.150e-33
Identity = 72/167 (43.11%), Postives = 98/167 (58.68%), Query Frame = 1
Query:    4 DLGEVSYYLGCHITRDRKARTVRFDQQRYAQTVAERFEVWKTSVIPIST-GKAPLSNADGPQNDAEIAEMRGIPYREAVGALMWVANMTRPDLVFTAHTLAKFGDNPGPEHWKAVMKALQYLKRTASLGVTYGGAT-----EDNMKLTAWVDADHASCPDTRRSVSG 486
            DLGE  Y LG  ITR+RK R++   Q++YA  V +RF    +  +   T G   L+    PQ +A+ AEM+ IPYREAVG+ M++   TRPDL +    +++F  NPG  HW AV + L YL  T +LG+T GG       +    LT + DAD+A+  DTRRSV G
Sbjct:    3 DLGEAQYLLGWSITRNRKNRSIFIHQEKYATKVLDRFSHLDSHPVGTPTDGSLKLTQDMCPQIEADKAEMKAIPYREAVGSFMYLMMGTRPDLAYFLREVSQFLANPGQAHWNAVKRGLNYLNGTRNLGITLGGIQNLEQYQSQNYLTVFTDADYANYQDTRRSVGG 169          
BLAST of mRNA_A-nodosum_M_contig82.74.1 vs. uniprot
Match: A0A6G0W6P6_9STRA (Integrase catalytic domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0W6P6_9STRA)

HSP 1 Score: 134 bits (338), Expect = 7.440e-32
Identity = 75/165 (45.45%), Postives = 101/165 (61.21%), Query Frame = 1
Query:    1 KDLGEVSYYLGCHITRDRKARTVRFDQQRYAQTVAERFEVWKTSVI--PISTGKAPLSNADGPQNDAEIAEMRGIPYREAVGALMWVANMTRPDLVFTAHTLAKFGDNPGPEHWKAVMKALQYLKRTASLGVTYGGATE-DNMKLTAWVDADHASCPDTRRSVSG 486
            KDLGE    LG  I R+R  RT+   Q RY +TV ERF++  ++ +  P  + K  LS +       +I+ M   PYR  VG+ M++A  TRPDL F    L++F DNPGP HW+A  +AL+YL  T S G+  GG+    N  L+A+VDAD+A+CPDTRR VSG
Sbjct:  556 KDLGEARDILGWQIERNRSERTLFLHQTRYCETVVERFDMASSNPVHTPFESSKT-LSKSQCATTPEDISFMASKPYRSLVGSPMYLAMGTRPDLAFPLQQLSQFLDNPGPAHWRAAKRALRYLNGTRSRGLLLGGSDSVHNPFLSAYVDADYANCPDTRRCVSG 719          
BLAST of mRNA_A-nodosum_M_contig82.74.1 vs. uniprot
Match: A0A2P4X6C4_9STRA (Integrase catalytic core protein (Fragment) n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4X6C4_9STRA)

HSP 1 Score: 134 bits (336), Expect = 9.130e-32
Identity = 76/169 (44.97%), Postives = 105/169 (62.13%), Query Frame = 1
Query:    4 DLGEVSYYLGCHITRDRKARTVRFDQQRYAQTVAERFEVWKTSVIPISTG---KAPLSNADGPQNDAEIAEMRGIPYREAVGALMWVANMTRPDLVFTAHTLAKFGDNPGPEHWKAVMKALQYLKRTASLGVTYGGA---TEDNM--KLTAWVDADHASCPDTRRSVSG 486
            DLGEV Y LG  I RDRK RT+   Q +YA  V +RF  +     PI+T     A LS +  P ++ E   M  IPYR+AVG++M++   TRPD+ F    +++F  NPG EHWKAV++ L+YL  T   G+  GG+   T +N+  +L A+ D+D+A+CPDTRRSV G
Sbjct:  438 DLGEVKYLLGWSIQRDRKNRTIFIHQHKYATKVIDRFSDYIP--YPIATPAERNAKLSVSSQPSSEQEKDAMSSIPYRQAVGSVMYLMVGTRPDMAFYMREVSQFLANPGMEHWKAVIRGLKYLSGTKEYGLLLGGSSDITSENLADQLVAYSDSDYANCPDTRRSVGG 604          
BLAST of mRNA_A-nodosum_M_contig82.74.1 vs. uniprot
Match: A0A5D6XRE8_9STRA (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XRE8_9STRA)

HSP 1 Score: 128 bits (321), Expect = 1.810e-31
Identity = 67/167 (40.12%), Postives = 96/167 (57.49%), Query Frame = 1
Query:    4 DLGEVSYYLGCHITRDRKARTVRFDQQRYAQTVAERFEVWKTSVIPISTGKA-PLSNADGPQNDAEIAEMRGIPYREAVGALMWVANMTRPDLVFTAHTLAKFGDNPGPEHWKAVMKALQYLKRTASLGVTYGGAT-----EDNMKLTAWVDADHASCPDTRRSVSG 486
            D G+  Y +G +  RDRK RT+   Q+ YA TV +RF       + I T K+  L+ A  P    +  EM  +PYR+AVG++M++   TRPD  +    +++F  NPG E+W AV   L+YLK T +LG+T GG       E    L+A+ DA +A+C DTRRS+ G
Sbjct:  116 DFGDAHYLIGWNTVRDRKQRTIHIHQENYANTVFKRFNHLDAQTVSIPTDKSIVLTQAMCPSTKEKTEEMANVPYRDAVGSVMYLIMSTRPDHAYFLREVSQFHVNPGREYWNAVKHGLKYLKGTTALGITLGGRENLTLLEKKTFLSAYTDASYANCKDTRRSIGG 282          
BLAST of mRNA_A-nodosum_M_contig82.74.1 vs. uniprot
Match: A0A4S4K4A0_9AGAM (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=2 Tax=Phellinidium pouzarii TaxID=167371 RepID=A0A4S4K4A0_9AGAM)

HSP 1 Score: 124 bits (311), Expect = 3.310e-31
Identity = 66/163 (40.49%), Postives = 91/163 (55.83%), Query Frame = 1
Query:    4 DLGEVSYYLGCHITRDRKARTVRFDQQRYAQTVAERFEVWKTSVI--PISTGKAPLSNADGPQNDAEIAEMRGIPYREAVGALMWVANMTRPDLVFTAHTLAKFGDNPGPEHWKAVMKALQYLKRTASLGVTYGGATEDNMKLTAWVDADHASCPDTRRSVSG 486
            DLG  S+ LG  + RDR  R +   Q++Y   + ERFE+   + +  P+  G   LS A  P++  EIA M+ +PYR+ VGALM++A  TRPD+ +    LA+F  NPGP HWKA     +YL+ T  + +TY          T + DADH    D RRS SG
Sbjct:   26 DLGPTSFLLGVRVERDRSKRLLSLSQRQYITDILERFEMSNCTTVTTPLPDGHR-LSKAMAPKDAEEIAFMKTVPYRQLVGALMYLAVATRPDISYAVGVLARFSSNPGPGHWKAAKHLCRYLQGTKDMKLTYAPDPHAPELFTTFSDADHGGDEDNRRSTSG 187          
BLAST of mRNA_A-nodosum_M_contig82.74.1 vs. uniprot
Match: A0A6H5JRE7_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRE7_9PHAE)

HSP 1 Score: 128 bits (322), Expect = 5.730e-31
Identity = 69/163 (42.33%), Postives = 94/163 (57.67%), Query Frame = 1
Query:    1 KDLGEVSYYLGCHITRDRKARTVRFDQQRYAQTVAERFEVWKTSVIPISTGKAPLSNADGPQNDAEIAEMRGIPYREAVGALMWVANMTRPDLVFTAHTLAKFGDNPGPEHWKAVMKALQYLKRTASLGVTYGGATEDNMKLTAWVDADHASCPDTRRSVSGS 489
            K+LGEV ++LGC I+RDR+A T+   Q+ Y + V ERF + +TS IP S    P +++     D E  +   +P+RE VG LMW+AN TRP+      T+A+    P    WKA  K L YLK TA L + Y   T  ++    +VDAD AS    RRSVSG+
Sbjct:   96 KNLGEVRFFLGCEISRDREAGTIEISQESYIRNVLERFNICRTSSIPAS----PANDSRSVMEDEEAGD---VPFREVVGCLMWIANNTRPETSNAVRTVARHSHEPKKSDWKAAQKILSYLKETAHLTLKYKQDTTVDVGTLVYVDADFASKATDRRSVSGA 251          
BLAST of mRNA_A-nodosum_M_contig82.74.1 vs. uniprot
Match: A0A8H5M255_9AGAR (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Tricholomella constricta TaxID=117010 RepID=A0A8H5M255_9AGAR)

HSP 1 Score: 125 bits (313), Expect = 6.040e-30
Identity = 68/163 (41.72%), Postives = 96/163 (58.90%), Query Frame = 1
Query:    4 DLGEVSYYLGCHITRDRKARTVRFDQQRYAQTVAER--FEVWKTSVIPISTGKAPLSNADGPQNDAEIAEMRGIPYREAVGALMWVANMTRPDLVFTAHTLAKFGDNPGPEHWKAVMKALQYLKRTASLGVTYGGATEDNMKLTAWVDADHASCPDTRRSVSG 486
            DLGE+ + LG  I RDR  RT+   Q+ Y  ++  R  F+  K   IP+ T  A LS+A  P   AE A+MR +PY EAVG+LM+ A  TRPD+ F   T+++F   PGP HW+AV +  +YLK +  L + YGG   +  +L  + DAD +   D R ++SG
Sbjct:   60 DLGELHWLLGIEIKRDRDRRTISLSQRSYLDSILRRYGFQDLKPVSIPMDTN-ARLSSAQSPATTAEFAQMRDVPYLEAVGSLMYAALGTRPDIAFAVQTVSRFSKKPGPAHWEAVKRIFRYLKGSTELWLVYGG---NQKELVGYADADGSMAED-RHAISG 217          
BLAST of mRNA_A-nodosum_M_contig82.74.1 vs. uniprot
Match: A0A4S4LBP1_9AGAM (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Phellinidium pouzarii TaxID=167371 RepID=A0A4S4LBP1_9AGAM)

HSP 1 Score: 124 bits (311), Expect = 1.220e-29
Identity = 66/163 (40.49%), Postives = 91/163 (55.83%), Query Frame = 1
Query:    4 DLGEVSYYLGCHITRDRKARTVRFDQQRYAQTVAERFEVWKTSVI--PISTGKAPLSNADGPQNDAEIAEMRGIPYREAVGALMWVANMTRPDLVFTAHTLAKFGDNPGPEHWKAVMKALQYLKRTASLGVTYGGATEDNMKLTAWVDADHASCPDTRRSVSG 486
            DLG  S+ LG  + RDR  R +   Q++Y   + ERFE+   + +  P+  G   LS A  P++  EIA M+ +PYR+ VGALM++A  TRPD+ +    LA+F  NPGP HWKA     +YL+ T  + +TY          T + DADH    D RRS SG
Sbjct:  166 DLGPTSFLLGVRVERDRSKRLLSLSQRQYIIDILERFEMSNCTTVTTPLPDGHR-LSKAMAPKDAEEIAFMKTVPYRQLVGALMYLAVATRPDISYAVGVLARFSSNPGPSHWKAAKHLCRYLQGTKDMKLTYAPDPHAPELFTTFSDADHGGDEDNRRSTSG 327          
BLAST of mRNA_A-nodosum_M_contig82.74.1 vs. uniprot
Match: A0A4S4L7S0_9AGAM (Reverse transcriptase Ty1/copia-type domain-containing protein n=7 Tax=Phellinidium pouzarii TaxID=167371 RepID=A0A4S4L7S0_9AGAM)

HSP 1 Score: 123 bits (309), Expect = 1.270e-29
Identity = 66/163 (40.49%), Postives = 91/163 (55.83%), Query Frame = 1
Query:    4 DLGEVSYYLGCHITRDRKARTVRFDQQRYAQTVAERFEVWKTSVI--PISTGKAPLSNADGPQNDAEIAEMRGIPYREAVGALMWVANMTRPDLVFTAHTLAKFGDNPGPEHWKAVMKALQYLKRTASLGVTYGGATEDNMKLTAWVDADHASCPDTRRSVSG 486
            DLG  S+ LG  + RDR  R +   Q++Y   + ERFE+   + +  P+  G   LS A  P++  EIA M+ +PYR+ VGALM++A  TRPD+ +    LA+F  NPGP HWKA     +YL+ T  + +TY          T + DADH    D RRS SG
Sbjct:   26 DLGPTSFLLGVRVERDRSKRLLSLSQRQYIIDILERFEMSNCTTVTTPLPDGHR-LSKAMAPKDAEEIAFMKTVPYRQLVGALMYLAVATRPDISYAVGVLARFSSNPGPGHWKAAKHLCRYLQGTKDMKLTYAPDPHAPELFTTFSDADHGGDEDNRRSTSG 187          
BLAST of mRNA_A-nodosum_M_contig82.74.1 vs. uniprot
Match: A0A060S8R4_PYCCI (Uncharacterized protein n=1 Tax=Pycnoporus cinnabarinus TaxID=5643 RepID=A0A060S8R4_PYCCI)

HSP 1 Score: 122 bits (305), Expect = 2.830e-29
Identity = 70/164 (42.68%), Postives = 96/164 (58.54%), Query Frame = 1
Query:    4 DLGEVSYYLGCHITRDRKARTVRFDQQRYAQTVAERFEVWKTSVIPISTGKAP---LSNADGPQNDAEIAEMRGIPYREAVGALMWVANMTRPDLVFTAHTLAKFGDNPGPEHWKAVMKALQYLKRTASLGVTYGGATEDNMKLTAWVDADHASCPDTRRSVSG 486
            DLG VS+ LG  I+RD +A T    Q  Y   +  RF    T + P+ST   P   LS    P++ AE+A MR +PYREA+G LM+ A  T+PD+VF   TLA+F  NPG  HW AV +  +YL  T +L   YGG   +  +L  +VDAD A+  + RR+++G
Sbjct:    3 DLGPVSWLLGIKISRDLEAGTFSLSQHAYIDALLARFNF--TDLKPMSTPMDPHQLLSKTQCPESPAEVARMRRVPYREAIGVLMYAALGTQPDIVFAVSTLAQFAQNPGQPHWDAVKRVFRYLLGTRTLSRVYGG---EKRELEGFVDADGAT-QEHRRAITG 160          
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig82.74.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A329RB62_9STRA5.150e-3343.11Uncharacterized protein n=1 Tax=Phytophthora cacto... [more]
A0A6G0W6P6_9STRA7.440e-3245.45Integrase catalytic domain-containing protein n=1 ... [more]
A0A2P4X6C4_9STRA9.130e-3244.97Integrase catalytic core protein (Fragment) n=1 Ta... [more]
A0A5D6XRE8_9STRA1.810e-3140.12Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A4S4K4A0_9AGAM3.310e-3140.49Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JRE7_9PHAE5.730e-3142.33Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A8H5M255_9AGAR6.040e-3041.72Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A4S4LBP1_9AGAM1.220e-2940.49Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A4S4L7S0_9AGAM1.270e-2940.49Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A060S8R4_PYCCI2.830e-2942.68Uncharacterized protein n=1 Tax=Pycnoporus cinnaba... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig82contigA-nodosum_M_contig82:939545..940397 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog164328.Phyra85763
PFAMsRVT_2,Retrotran_gag_2,gag_pre-integrs,rve,zf-CCHC
Model size853
Max annot lvl4776|Peronosporales
Hectar predicted targeting categoryother localisation
Exons1
Evalue7.42e-30
EggNOG OGsCOG2801@1|root,KOG0017@2759|Eukaryota,3QGIS@4776|Peronosporales
Descriptiontransposition, RNA-mediated
Cds size516
COG categoryL
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870146.9430509-UTR-A-nodosum_M_contig82:939544..9398811680870146.9430509-UTR-A-nodosum_M_contig82:939544..939881Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig82 939545..939881 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870146.9606385-CDS-A-nodosum_M_contig82:939881..9403971680870146.9606385-CDS-A-nodosum_M_contig82:939881..940397Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig82 939882..940397 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig82.74.1prot_A-nodosum_M_contig82.74.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig82 939882..940397 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig82.74.1

>prot_A-nodosum_M_contig82.74.1 ID=prot_A-nodosum_M_contig82.74.1|Name=mRNA_A-nodosum_M_contig82.74.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=172bp
KDLGEVSYYLGCHITRDRKARTVRFDQQRYAQTVAERFEVWKTSVIPIST
GKAPLSNADGPQNDAEIAEMRGIPYREAVGALMWVANMTRPDLVFTAHTL
AKFGDNPGPEHWKAVMKALQYLKRTASLGVTYGGATEDNMKLTAWVDADH
ASCPDTRRSVSGSGDARWRGS*
back to top

mRNA from alignment at A-nodosum_M_contig82:939545..940397-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig82.74.1 ID=mRNA_A-nodosum_M_contig82.74.1|Name=mRNA_A-nodosum_M_contig82.74.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=853bp|location=Sequence derived from alignment at A-nodosum_M_contig82:939545..940397- (Ascophyllum nodosum dioecious)
AAGGATCTAGGGGAGGTCTCGTACTACCTGGGATGTCACATTACTCGGGA CCGCAAGGCGAGGACGGTGAGGTTCGATCAGCAGCGTTACGCGCAGACGG TAGCCGAGCGATTCGAAGTTTGGAAGACCAGCGTGATCCCTATTTCTACG GGGAAAGCGCCACTTTCGAACGCAGACGGGCCGCAAAACGACGCTGAGAT CGCAGAGATGCGTGGCATCCCGTATCGCGAGGCAGTGGGGGCACTAATGT GGGTAGCCAACATGACTCGGCCTGACCTAGTTTTTACCGCGCACACGCTC GCCAAGTTTGGTGACAACCCTGGGCCCGAGCACTGGAAGGCAGTGATGAA AGCGCTACAGTACCTTAAGCGAACGGCGAGCCTAGGAGTAACATATGGAG GCGCGACGGAGGACAACATGAAGCTGACGGCATGGGTGGATGCCGATCAC GCATCATGCCCTGATACCCGCCGCTCGGTATCGGGGAGCGGTGATGCTCG GTGGAGGGGCAGTTAGTTGGTTTTCGCGGGCGCAGAGAATAACCGCGACA GCGACATCCGAATCTGAGTACGTGGCACTGGCGGAGGTTGTGAATGAGCT ACGTTTCCTTCGGCAGGTGAAAGCGTTTATGGTACCTCCAATCGACTACA ACATCCGTGTTCACGAGGACAACGAGGGCGCCATCAAGATGGCAGAGAAC AGGTTTAGCAGTCGACGAACAAGACACATCGACGTGAAGCATCATATGGT TCGGGATGCCGTCGATGGGGGAATAATTCGTATAGAGTATGTCAAGTCGA GAGAACAGCACGCGGACGTACTAACTAAGGCGATAGACGCTAAGTCGTTT GAA
back to top

Coding sequence (CDS) from alignment at A-nodosum_M_contig82:939545..940397-

>mRNA_A-nodosum_M_contig82.74.1 ID=mRNA_A-nodosum_M_contig82.74.1|Name=mRNA_A-nodosum_M_contig82.74.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=516bp|location=Sequence derived from alignment at A-nodosum_M_contig82:939545..940397- (Ascophyllum nodosum dioecious)
AAGGATCTAGGGGAGGTCTCGTACTACCTGGGATGTCACATTACTCGGGA
CCGCAAGGCGAGGACGGTGAGGTTCGATCAGCAGCGTTACGCGCAGACGG
TAGCCGAGCGATTCGAAGTTTGGAAGACCAGCGTGATCCCTATTTCTACG
GGGAAAGCGCCACTTTCGAACGCAGACGGGCCGCAAAACGACGCTGAGAT
CGCAGAGATGCGTGGCATCCCGTATCGCGAGGCAGTGGGGGCACTAATGT
GGGTAGCCAACATGACTCGGCCTGACCTAGTTTTTACCGCGCACACGCTC
GCCAAGTTTGGTGACAACCCTGGGCCCGAGCACTGGAAGGCAGTGATGAA
AGCGCTACAGTACCTTAAGCGAACGGCGAGCCTAGGAGTAACATATGGAG
GCGCGACGGAGGACAACATGAAGCTGACGGCATGGGTGGATGCCGATCAC
GCATCATGCCCTGATACCCGCCGCTCGGTATCGGGGAGCGGTGATGCTCG
GTGGAGGGGCAGTTAG
back to top