mRNA_A-nodosum_M_contig82.25.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_A-nodosum_M_contig82.25.1
Unique Name	mRNA_A-nodosum_M_contig82.25.1
Type	mRNA
Organism	Ascophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))

Homology

The following BLAST results are available for this feature:

BLAST of mRNA_A-nodosum_M_contig82.25.1 vs. uniprot

BLAST of mRNA_A-nodosum_M_contig82.25.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0


Match Name	E-value	Identity	Description

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
A-nodosum_M_contig82	contig	A-nodosum_M_contig82:246719..253564 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
Ascophyllum nodosum dioecious OGS1.0	2022-07-08

Properties


Property Name	Value
Stop	0
Start	0
Model size	246
Hectar predicted targeting category	other localisation
Exons	2
Cds size	243

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1680870139.6520436-CDS-A-nodosum_M_contig82:246719..246911	1680870139.6520436-CDS-A-nodosum_M_contig82:246719..246911	Ascophyllum nodosum dioecious	CDS	A-nodosum_M_contig82 246720..246911 -
1680870139.6664388-CDS-A-nodosum_M_contig82:253513..253564	1680870139.6664388-CDS-A-nodosum_M_contig82:253513..253564	Ascophyllum nodosum dioecious	CDS	A-nodosum_M_contig82 253514..253564 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_A-nodosum_M_contig82.25.1	prot_A-nodosum_M_contig82.25.1	Ascophyllum nodosum dioecious	polypeptide	A-nodosum_M_contig82 246720..253564 -

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at A-nodosum_M_contig82:246719..253564-
coding sequence from alignment at A-nodosum_M_contig82:246719..253564-

protein sequence of mRNA_A-nodosum_M_contig82.25.1

>prot_A-nodosum_M_contig82.25.1 ID=prot_A-nodosum_M_contig82.25.1|Name=mRNA_A-nodosum_M_contig82.25.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=81bp
SPLVNHEGATENETQGESPAPYLRSQRRYKIRGQSVKQISLMPGRGTTCH
LSPPSCRIQQPMLKLLFDVGHVPGTCYIFLC

mRNA from alignment at A-nodosum_M_contig82:246719..253564-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_A-nodosum_M_contig82.25.1 ID=mRNA_A-nodosum_M_contig82.25.1|Name=mRNA_A-nodosum_M_contig82.25.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=6846bp|location=Sequence derived from alignment at A-nodosum_M_contig82:246719..253564- (Ascophyllum nodosum dioecious)
TCACCACTAGTCAACCATGAAGGTGCTACAGAAAACGAAACACAAGGTGA
GGTGAGGTGATGACCCCGTGTCTGTCAAAACATGTTCTTGGCGCTCAAGA
GGCTGGAGTAAGGGTGAAAGATGACGGAACAAAAGTATGACGTGACTGCA
ACAGCTTTATCAGCGTGTGTTTTGTGTGTGTGTGTTTTCTTCCCATTTAT
TCTGGACGTCAGGATTGTGGACGTACCAGCCGGGGTCACACAGGAGGAAG
GTCACACAGGATTTGTCATCCACCTTCCTTCTGCGGTACTTGCCTTAATT
TTTCTCGCGAGAAGGATTCAGCCGTTCCTTTCCCTCGCCGGCCGTGAAGT
CGAATTATGTGGATTTAATGGATCTCCACTTTTTGGGCATTTTTTGTTTT
GTTTTGTTTTTGTATTTTTTGGCGAGGAAAAATCCCATTTCCCGGGATTC
GAACTCGCGTCCCAACATGTCAGAAGGTTTCGAGGTTTCCAACTGAACCA
TCGGGGCGACCGGCTTCGATTGTACAGTAGCTCTACAGTAGCAGTAGTCT
GTTTCTCGTACGAGTTCAACAACACGTACCTGCAGCACGTATTAAATTGT
TTGTGCTTGCTGTAAAAGCGCTTTCCTCTGCGCGCTGTTCGTCGGCCAAG
GCTTGCTACCCAACACCAACACTTTCGATATAGTGAGATCTTGGATAATA
AAAATCAACGATAAAGAGGATGACCTCCCTGCTGTGCCTGTCACTCACTT
GACAAATCTTTGTGTAATCTCGAATGAGTCTCTCGAATCAGGGCGCAATT
GCTCTGTATACCTCCCATGAGTTGCAACTCTAACTTCAGTTCTGCTGTAC
ACAGCACAGTACTGTATCTTGTTCTCAGTACGTACATAGACTACTGCTGT
TATCTTGTACGTTGAGGACACAAGACATCAGTACGAGCTGTCGTAACAAG
CTCCTCGGTGCCATTGTCTCGTCCTCGTAGCTCTGCGCGTACATCATACA
ACCGTCTCTCGCCTGTGGATTCTACACATACCCGCAGCTTAACGAAAAGC
TAATGCTACCTTAACAACCAGTCTTTCTGTAACCTCCACCTCCGCTTTTA
CCACTATTAAATAGTCTATAAATAGAGCTAATATACCGGTACAGTGAAGG
CAGTACAGTATACGTTCAACTTGGGAGTTCAAAGACAAGCTATACGAATG
GAGCTTCAAGCAAAAATATTTTGTCCGGTACCGTACAATATTTGTATGGA
CGGACATTAAATCTCCAATCGATGTTTTCTGCCAAGGAATTCGGTGAGGA
AAATAAGTAATGTACAGTAAGTAGCTCAGCGGGGTTCGAACCCGGTCCTC
CTGTCGACGCCAGTAAGATAAGGTTACCACTACACGACAAAGTAAAAATC
ATTTGACAATTTCCACTTTGTCATCAATTCTTGTATCATTTTCACCCCAA
AACGTGGGGCAGCACAAAACCTTTTCCGATTTTGATTTTACGGCGTACAT
TCCGCGGCTTTGTTCGTTTTAAAGAGAAATCTGAACGCATCTAGACCTTC
TGAGCATCTCCCAGTCAGGGGGAAAAAATGTCAAAACGTTTAGGTGGGAT
CATGTATGGTCACACACATAGCAATAGTATGGATCAACCGGGCAAGGTTG
CCAATTCTGCTCGTGGTCAGCTGGACAGAGAAAATGAATATTTCCCTGTC
CGCGTTCACGCCTGAGAATTTGGTGTCGCAAGACGGGTTCGGCACCGCGT
CAGCCTGCTCATCTCCATACTCAGGCTAAATATGGTGGTTACTTATTGGT
TTTCCTCCCGAGTTCCGCGACGGCATCAATTTACAAGTATTTATTTTAAA
CGCCATACACCATCGGATCAGTCCCGAGTTTATCTGATCCCGCAATTGCG
TACCGATGGCGTTCGCTGCGGAGAGTCCGCCGGCACAGGGCCAGTAAACC
TCAAGGTAGTTCCGAACGAGTGCTGCCTTGGCAAGTCACCATAGACCAAT
TAATATGCGCCTTTCTTTCCCACACCCACTATTTGGTATCAAGTGGACAT
GTTGAAAGTACCGGCAAGTATGCTTCAAAGACAAAACCTCTTCATGGCAT
TTAATCGGGTTCCCCAATGGTAGCAATATTGGGTCAACAGTATCATGTCG
GGGAGAAACCCACCGTTATACTGTACACTTACATTAATCACCATGGAGGG
ACACCAAACAAAACAGACAAAAGATACGATGATACTGGATTACAGCTCAG
TTTGTAACATCGGGTCAAGGATCGGATGGGTATCGACGAAGGGAATCCAC
GTGTCGTGGGTTTAGACAGAACAGTACATACAAGTACCAGGTAGCAGTTA
TGGCGTAAGAATTAAGTAAAATTGAATTGTGAAAGCGGCAGAAGGAAAGT
ATAAGGGTAGAGGCAAAGTGTTTTGGGTCAAGGGTTTGAGGAGGATCGGA
GAGGGCGACCAGGCAGATGTCTTCAACTGCTTTAGGGTCGTTCTTTGAAC
GAGAGCTTTTATTTCCAACCTTTCCGAACTTTCCGGGGGAAAAAACCCTT
GCGGAAAGCCTCTGTGCCAACTTTGGAAATGGACTTTCCACAGTTAGAAA
AATTGGAAGTACGCCTCCTGTGGTCACCTTGGAACACTTGGTACGTGATG
GTTCTACACCCCACACAGGGATCGACAGCGAGGCGCCCACAACCTGCACC
GATGTCCGATACTCGCTGTGGGCTTGCCTTATACCTGTCGCTTCGACACC
CGGAAATTTGGTGTCACCGCGAACCCCACAGCACAAGTTCTCTGCAGCGG
CGTGGTTGGAGGTCGAGCTGTACCTGGTGCAACCCCGACAGTCCCTCATT
TGCAGTTTCTTGGAGTCCCTCTTTGAAGAGGATCAAGACTACACCAGACG
TAGTTCATGCGGTAGCATGAAACTAGGTGGAGCCCATGTCAGGGACGTGG
AGCCCATCAGACGAAGAAGCTGTACCTATCTGAGGTCTAGATGAGCTACA
TGTTCCCGGTGATTTTCCATCGTTGGAAGACGTCCAAAAATACTCCAAAC
GAGCACGAGATACATTATATTTGCAAAGCAAACTTTGTTATATTTTCAAA
TGAAATTTTGAAAGCTTGAAATGTGGTTAACACTGGCCCTTGAAAAGAAC
TTTGAGGTGGGAGCATATTCCCAAAACAACACACAGACGATGGTGACGGG
GCCTATAGGGTACAAGTATAAGTAAATTAACCCATGCGGGAGCATCCGTA
CTACTTGTAGACAGCAACTTTCAGCGTGGCAGATCTTAGCAACGACTCCG
CGATGACTTCGACTTGGCACCAGTCCCCTCCAAGTCTGATGCCCAACGCC
CATCAAATACTTGTGGTCCCCCAGGGCTTCTAGTCAAACGCCTGCTGCAG
AAGCCGAGGCGGAGACATGGTAAGGCGAGGATGAAATCCGAATGCTCTGC
AGTAGATCCAGGCCATTCTGACTGCCTACGCTGGCACTGTAAAACATGCG
ATGAGTTTGTCCACCCCGTCAAGGAACAACGCGCGCGTTGTTAGTATGAG
CATGGAACGCTCAACCATTCACTGCTTGAATATGTTCGCCCATGAATAGC
CCGAGCTCTTGGAGGTGTGTTGTTAGCGACGACGCGGGACCAACCTTTAA
AGTGTATCTTCACTCGTTGTCGGGGCCGGCCGGAGCACGACACCGGCCAG
CTCTTTGGGCGAAGCTGCCCGGTTGCCTCAAAGCGTCACCCGGGTCCTCA
TTTCTCGCACCCTCGAAAGGCCCGAAGCAGGTGTCACCAAGAGTAGTTGT
GACTGTCGCGAAGCCGATGTTCTCCCTTCTTCTATTCCGTATCCTTATCA
CTATTACTAGTACAGTAGTTTATTATACTAGACTATATACAGTAGACTAT
GTGTACAGTAGTATGTATGGTCACACATATAGCAAGAGTATGGATCAACC
GGGTAAGGTTGCCAATCCTGCTCGTGTTCAGCTGAATAGGGAAAATAACC
ATTTTCCTGTTCGCGCTCGCGCCTGAGAAATTGGTCTCGCGACGTGGGTT
CAGCCGTCTCACCCCGCGTCGCCCCGCCCATCTTCCGTTCCCGGAGCGAA
TCTGGTGCTTATCCTTACTCCCAGGCTCCTCTCCTCCCTCCCGCTTTCCC
CGGCGGTACTGTACGCCAGTTTTGGTGTCATGACTGTTGGTACGGACGGT
CTGGCTTGTGCATTCAACTGGCAGTGCACCGCCAACGACATCGGATATGC
CGTTAGTTGGTCACAGTATGCCGGAACTCCTTACCGTCATAGTCTCCTCA
CTTCCACGGTTTGGGTCCACCCCGGCGGGGAGGCAGCCAGGGCAGGCTCG
TTGGAGGAAGCACGAAATTCCCAAGACGAAATTTCCCATGTTTCGCCATA
ACATGGGGTTGCGATTATGTTCTCATACTCGTAGTGTGACTTTTTATTAA
TATTATTTCCGGGTCTTGTTTTCTCATGAGACCACTTCTTGCTAGGGATA
TTATTTAAAGAAAAATCAGAATGCACCTAGACCTTCTGAGCATCCCCCAG
TCAGGGGGGAAAAAATGTCAAAACGTTTAGGTGGGATCAATAGCTGAAAA
TACAAAACCTCTTCATGGCATTTAAACTGGTTCCCCGATGGTAATAACAT
TGGGTCAACAGTATAATGTCGGGGAGAAACCCACCGTCATACTGTACACT
TACATTAATCGCCATGCAGGGACACCAACAAAAAGGAAGACAAACCAATA
CATCATCAAACAATAAAGACAAATCCGATACAATAATTGAAACGAGCACA
GCAGAGGACCATGATGATGAGAATCTTCATAATCCAAGTACACGACCCCG
TTATTCACCTGGAAGTAGACGAAGAGCAGTAGGCGATCACACAAGGCGGT
AAGAGGCAAGCGGAAAGAACTGGGTTCCTCGCTCCATACTTGTCAGGGCT
ACGACACACAGATGCTCCTCATGCATGGACTTAGCTATGGTCCCGCGTTG
ACCAGAAACACAAAGGAAAGAGCATCTGTCTGTCAAAGTGACCAAGTAGG
CCTCAGACCACCTCGTGTAACCTCCCATACGATCCTGACCCGAACTATCT
TCAGCTGCATGTCTTTTATTCCGAACTGTCGTGCCGGATTCATCAGTTCC
TTGAATCTTCTCGCAGAACGTACACCAGCTCCATTATTGTTTCATGGCAA
AACGATGTCCAACCTTGTAAGCAACCCGCCGAACACTACCTGTATTTATA
TCGGGGCAAACACTAAATCTTTTCGGATTCTACTTGACAAAGGCCGTGTT
GGTCCATATTCCAAACCGCGATGCGAAGAGCCCGAAGAACCTGTAGAGCT
ATGAGAGCATCCCATCCCGTCGCCAGGGACCAGCGTGGGCGACCTTAGGG
CCTTTCTCCTTTCTGTTCTCTCTCAAGAGCGGTGTTTTGTTTTGTGGTGT
CGTTTTCTTGACTGCGGATTGATGTGCCCGTGTGCGCACTCCGAACTTTC
TCGACGCCGTACTATAAAAAGAAAGGGGGACCATAATTTCAATACAAGCG
GTGGAAAGCTCTTGTTTCTCATTGTACCACCGAAATGTACGGCCGAGGAA
GTCATTGGTGATTGGTCAGGTTACCAAGGTATACTCGTGCAGGAGATCAG
GCTACCAAGGTAACAAGGTAGCGACCCGCCTGTAAGGCAACCGCCCGCCA
GCCTCGTGTAGCCTAAGCGCCAGTCGTTATCGTTATCAGGAAAAGGGTCC
AAACAGTGAAACTACTTGTCAGTAAGGTGGGTATGCGGTGGACGCTTGTC
GCTGGTCGTGAGATTCTCTCACTCGAGATTGTATCAAACAATCAAACAGC
TGATGTACCTCAGCAAAACACGGGTACGTGGCGCTGCTACCGCTGTTGTT
TCGACAGCGGCAGCGATGGATTGAGGCTCGGAGGGGCATCGACGTGCGAT
TCAGCATCGTCTTTTGCTTTCCCCAACCACGTGTTCTTCTCCGACGAGGA
CAGCATTGTACCTCAGAGCCACGCAGAGGGCCTTGTTTTCCTTTGCATAG
AAAAATGTACTGAAGTAAGACCTGGGTGGCAGTGTCGGTTCGTGCAAGAT
TACGCCGCACCAGTCAAGAAAAAAATGCGTCATGCGGTCTGTTCGTTTCT
TGACGGAGGCACGTTTTTTGACAGGAACATCTCAGGTTTCCTCTCGCTAC
CATCAGCCAGTCAATTTTCGCTGTCAAGGGAGTAAGCGAAGAAAATGTTC
GTAGTCAAGGCACCCTCTCAGCGACAACTCCCATACGACTGGCACCAGTC
TTCTTCCAAGTCTATTAATAGCGAACAACGACCAACAGCTACAGCTACAG
CGTAGTTTAAAGATTTTTTTTTAAAAGAAAAATTGTCCTGTCGGACGTCA
AGTCAACGCCTGCCGCAGAGGGAGCGCCGGAGACATGGTGTAAGCTCCAC
CAGGCGGTGGCAAAAACCGGACGCCCTACGATGATGGGTTTAGGCGGTCC
TAAATGCAACTCACCTACGTTAGCAAGTGTAACTGTAGAAGAGCGTCTGA
TAAGTGCTCCACCACGCAGAGAAACTGTTATCAATAGCTCTGATAGCTCT
AATGGCATGCAACGCTCAATCTCTGCCTGCCTGGACATTTTTCGCTTCTC
GAGAGCCCGGCTCCTTACTTGCGTTCTCAGCGAAGATACAAGATACGGGG
CCAATCCGTCAAGCAGATTTCTTTGATGCCCGGCCGGGGCACGACCTGTC
ACCTCTCGCCTCCGTCGTGTCGGATACAGCAACCAATGCTAAAGCTGCTC
TTCGATGTTGGGCATGTTCCAGGTACTTGTTACATTTTTTTGTGTT

Coding sequence (CDS) from alignment at A-nodosum_M_contig82:246719..253564-

>mRNA_A-nodosum_M_contig82.25.1 ID=mRNA_A-nodosum_M_contig82.25.1|Name=mRNA_A-nodosum_M_contig82.25.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=243bp|location=Sequence derived from alignment at A-nodosum_M_contig82:246719..253564- (Ascophyllum nodosum dioecious)
TCACCACTAGTCAACCATGAAGGTGCTACAGAAAACGAAACACAAGGTGA
GAGCCCGGCTCCTTACTTGCGTTCTCAGCGAAGATACAAGATACGGGGCC
AATCCGTCAAGCAGATTTCTTTGATGCCCGGCCGGGGCACGACCTGTCAC
CTCTCGCCTCCGTCGTGTCGGATACAGCAACCAATGCTAAAGCTGCTCTT
CGATGTTGGGCATGTTCCAGGTACTTGTTACATTTTTTTGTGT