mRNA_A-nodosum_M_contig82.10.4 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig82.10.4
Unique NamemRNA_A-nodosum_M_contig82.10.4
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig82.10.4 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig82contigA-nodosum_M_contig82:119367..122810 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size568
Hectar predicted targeting categoryother localisation
Exons4
Cds size567
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870139.5773733-CDS-A-nodosum_M_contig82:119366..1195201680870139.5773733-CDS-A-nodosum_M_contig82:119366..119520Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig82 119367..119520 -
1680870139.5899265-CDS-A-nodosum_M_contig82:119743..1199341680870139.5899265-CDS-A-nodosum_M_contig82:119743..119934Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig82 119744..119934 -
1680870139.6096225-CDS-A-nodosum_M_contig82:120323..1204671680870139.6096225-CDS-A-nodosum_M_contig82:120323..120467Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig82 120324..120467 -
1680870139.619432-CDS-A-nodosum_M_contig82:122732..1228101680870139.619432-CDS-A-nodosum_M_contig82:122732..122810Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig82 122733..122810 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig82.10.4prot_A-nodosum_M_contig82.10.4Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig82 119367..122810 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig82.10.4

>prot_A-nodosum_M_contig82.10.4 ID=prot_A-nodosum_M_contig82.10.4|Name=mRNA_A-nodosum_M_contig82.10.4|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=189bp
PVAVTRTAAEEQQASSSTDNIGRPQQVFREFEEIFFQPSVEAHQGYHGNR
IPATLTWRDITGNSESFQEAFRGKVIPTAVDTTLNMVKKVANAPDAPPFP
AAQLLPKANALFGISENEEGKPSKMWSGVADGSIFRNTLWESLAFAFTDS
DGPYADLKHMKAKKVTLEDAERALMPYLGDLQKPCEYL*
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mRNA from alignment at A-nodosum_M_contig82:119367..122810-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig82.10.4 ID=mRNA_A-nodosum_M_contig82.10.4|Name=mRNA_A-nodosum_M_contig82.10.4|organism=Ascophyllum nodosum dioecious|type=mRNA|length=3444bp|location=Sequence derived from alignment at A-nodosum_M_contig82:119367..122810- (Ascophyllum nodosum dioecious)
CCAGTAGCAGTAACAAGAACCGCAGCCGAAGAGCAGCAGGCGTCGAGTTC
TACAGATAACATTGGTCGTCCTCAACAGGTGCGCACTTCTTCGAGCCCGG
CTCATGAGAAGGTAGGCGCTTTGCCATGGTTCGGCCGGTCGAGAAGAAAT
TTTGCCCTCGAACGAACTCTTCAGCCAACGGAAAAATTAACTTGAAGATT
ATATCATACTGTTGATTCAATGTTACTATCAATACTGTACCTTACTTAGC
TGCACTATTAGACTATAATATTCTCCTCTGTGACCCTGGGGTCCAACGAA
AAATGGATGGGAAGAAAAACTACTTCTGGAGTTGAGCCTATACACTTCTG
TAGAGCCTGCTAAAGCTTCATACACTTGATATTGGTACAATATGATGAAC
GTTTTTTGTATTTTCAGTACCACAGCCGCTTCCTCTTGTATGGAGAGTAC
TATTACCGTCGCACGTTTTTCCTTCCGGGTTGTGTTTTCCTATTAATATT
AATATTAATACCTTGTGATCACTGGAACTTGGATGTTTCTCAGACACCTG
ATATTTGGCTTTGTTTATTGGTACAACAGACAGGTACTAATACGTTTATA
AACGGCGGACTCTTGGCGGCAGTGAACGCCATCGGTACACATTTGCGTGA
CCCGATAAACTCGGGACTGACCCGACGGTGTATGATGCTGGATGCCGCCG
CGGAACTCAGGAGGAATCCCGTAAGTAAGGACCAGATAGCCTGAGTATGG
AGAATGAGCAGGCTGACGCGGGACGGGACGGCTGAACCCGTCCCGTGAGA
CCAAATTCCCAGGCACGTACGGGGACAGGGAATATTCATTTTCCCTGTTC
AGCTGACCACGAGCAGGATTGGCAAGCTTACCCGGTTGATCCACACTCTG
CTATATGTGATGACCATACATCCTGTTATTTTATACTGTATTATTATTCA
AGTATTTTCAATATTGTGTTGTTTGGGTTTTGTCTGGTACTATAAGTGTA
CAACATAACGGAGGGTTAACCCCGGTATTATACTATTGACCCAATGTTAC
TACGGAGGGAACCCGTTTAAATGCCACGAAGAGGTTTTGTATTAGCCTAT
GATCCCACCCACTATAATTTCTCTGACTGAAGGATGCTTTTAAGGTGTAG
ATGCGTTCAGATTTTTCTTTCAAGAACCAAGCCCTATTTATGTATGGCCC
GAAGGCAATATTATCCCAGTATGTTTTATTTTTTCCTCCTCCTCCGATCA
GATCGGGGAGGTTTTTTCGTCTGTTATTTTTTCCTCTCTTTCTTTTTTTT
TTTGTGAATGTAGCGATGGTATGGAAAGGGAAGCCTGCGTCTGTGACCAC
GGGTTCGAGAGATCATAATAATAATAATAATAATAATTACTATCCTCTTA
ACTATGTACTACATTGTTTGTTTGGTTATGCTTGGTGGCTCTGTTTATGA
TTAATATAAATAGAGGCTTTGCAGTTATGGCCTATATAACAGTATATTAT
TTATATTATTACTATTAATACCATGTTTGATGGTGTACTACTGTACATTG
GTTTCTGTACATTGGTTTTGTGGTTACTGTTTTTCTTGTATCCCTGCATG
GCGATTAATGTAAGTGTACAGTACAACGGTGGGCTTCTCCCCGACATTAT
ACTGTTGACCCAATGTTATTACCATCGGGGAACCCCTTTAAACGCCATGA
AGAGGTTTTGTATTTGCAGCCTTTGATCCAACCTAAATGTTTGGACATTT
TCGCCCCCTGTACTGGGGGATGCTCAGGAGGTCTAGGTGCGTTCTTATTT
TTCTTTAAAACTCATACAGAGTATGGTGAGAGTTCAATCAAACAATCACC
GATACTGTACAAAAGTTTTGTTCTCATGCCAAAAATAGAATTTGTTTAGG
ATATGCCTAACTAACCTCTGCTCATTCATGGTTCCGGCTGGCGTTGCAAT
TTCCACGCAGACGCTTTCATAAAATGTATGGAGTCGCCGAGAACGCGTGT
TGTCGTACGACCGTGTCGAAGAGCGGTGTGCCATACCATAGAGAAGGTGG
TCGTTATGATTCCGAACCGGAACGATCTCAGCGAGGAGCGGTTGAGGATG
ACGAGTCTCCAACAACTACGATCACCTGTCTCTGCACGAACGGCAAAGAA
GGTTAAAACAGACGCGGTTTTCGTGCAGGTTCGTTTCCCACGGATCGACT
TCACGTCCAACTTAACACATCGTAGGCATGCCTTTTCACCAACGCACCCC
CACCCCCACGAAAACACCTCGTGGCTTCATCCTAAACCCCTGCTTCGACT
TGCTCCGTGCCGACCGCGTACTATCTACTATCGGATTTAAAAGGTCTTCC
GTGAGTTCGAGGAGATCTTCTTCCAGCCCTCGGTCGAAGCTCACCAGGGC
TACCACGGCAACCGCATCCCGGCAACCCTGACATGGCGCGATATCACGGG
GAACAGCGAAAGCTTCCAGGAGGCGTTCCGCGGAAAGGCATGTACTTCTT
TATAGTTGTTGTTGTTCCTCAGCATTCAGCGTATTGGTTGCCAACCCGAA
AGAACTACTTTACACGGCGGAAAAGAGAACAAAAGAAAAAGTATGGCAGC
ATACCCCCCACCCCCTGCACAGCTCCTTCCGAGAAAAAAAAAGACGCAAC
GCTTCTACAGCCGCCACGCATAGTACGCGGTAAGGAGTACCCTCCATTCC
ACAATACACCATATCGCAGCGGCCAAAACCGTTGAATCATTATGGAGCAT
AACTCATGAGTTTCTTCACATGTTTTCATAGCACCTCTCTCTTTCTCTCA
TGAATACCTTTACAAGTTTCCCTCTTTCTCTCTCCCCCCCCCCTCTCTCT
CTCTCCCCGTTTCCCACGAACGATAGGTAATACCAACGGCCGTTGACACC
ACGCTGAATATGGTAAAAAAGGTCGCCAATGCGCCCGACGCCCCACCTTT
CCCTGCCGCGCAACTCCTACCGAAAGCCAACGCCCTGTTCGGCATTTCCG
AAAACGAAGAAGGAAAGCCGTCCAAAATGTGGAGTGGCGTCGCTGACGGA
AGCATATTTAGGAACACGTAAGGCTCAACTTTGATTAGGTGTACGATAGC
GATATATTACACTGAACACGCGTGTTACACCACTTGGAGCTGCTTCGAAA
GTCAAGAAAGAAATAATGTTGAGAGGCAAGTGTGGCCGGAGGGACATGCC
TCAGTCGTGTCTAGTATTCCTCTCCTTTGGGTTAATACTACACGGCGCAC
CATTGAGAGCTAACGCGTCGTACACTTCAAAATAAAACAGGTTGTGGGAG
AGCCTCGCGTTTGCCTTCACTGACTCGGATGGCCCCTACGCCGACCTAAA
GCACATGAAAGCAAAGAAAGTCACCCTTGAAGACGCAGAACGAGCTTTGA
TGCCTTACCTTGGCGACCTTCAGAAACCCTGTGAGTATTTATAA
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Coding sequence (CDS) from alignment at A-nodosum_M_contig82:119367..122810-

>mRNA_A-nodosum_M_contig82.10.4 ID=mRNA_A-nodosum_M_contig82.10.4|Name=mRNA_A-nodosum_M_contig82.10.4|organism=Ascophyllum nodosum dioecious|type=CDS|length=567bp|location=Sequence derived from alignment at A-nodosum_M_contig82:119367..122810- (Ascophyllum nodosum dioecious)
CCAGTAGCAGTAACAAGAACCGCAGCCGAAGAGCAGCAGGCGTCGAGTTC
TACAGATAACATTGGTCGTCCTCAACAGGTCTTCCGTGAGTTCGAGGAGA
TCTTCTTCCAGCCCTCGGTCGAAGCTCACCAGGGCTACCACGGCAACCGC
ATCCCGGCAACCCTGACATGGCGCGATATCACGGGGAACAGCGAAAGCTT
CCAGGAGGCGTTCCGCGGAAAGGTAATACCAACGGCCGTTGACACCACGC
TGAATATGGTAAAAAAGGTCGCCAATGCGCCCGACGCCCCACCTTTCCCT
GCCGCGCAACTCCTACCGAAAGCCAACGCCCTGTTCGGCATTTCCGAAAA
CGAAGAAGGAAAGCCGTCCAAAATGTGGAGTGGCGTCGCTGACGGAAGCA
TATTTAGGAACACGTTGTGGGAGAGCCTCGCGTTTGCCTTCACTGACTCG
GATGGCCCCTACGCCGACCTAAAGCACATGAAAGCAAAGAAAGTCACCCT
TGAAGACGCAGAACGAGCTTTGATGCCTTACCTTGGCGACCTTCAGAAAC
CCTGTGAGTATTTATAA
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