mRNA_A-nodosum_M_contig8194.1.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig8194.1.1
Unique NamemRNA_A-nodosum_M_contig8194.1.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
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BLAST of mRNA_A-nodosum_M_contig8194.1.1 vs. uniprot
Match: A0A6H5JAY4_9PHAE (C3H1-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAY4_9PHAE)

HSP 1 Score: 109 bits (272), Expect = 1.150e-25
Identity = 51/83 (61.45%), Postives = 61/83 (73.49%), Query Frame = 1 
Query:    7 KLRIIHDLTFAGGA-YRWSVNDKTDFSVAPPCELGHVFADVCRRIMYLRQRHGVVARVMVCRIDVKDAFRQIPVDPLHAAKFG 252
            K RIIHDLTF  G   R SVN  TDF  AP C LGHV +D+ +R++YLRQ HGV   +++CRIDVK+AFRQIPVDP  A+ FG
Sbjct:  729 KFRIIHDLTFTSGVPIRTSVNHDTDFDQAPECLLGHVLSDILKRVLYLRQVHGVSLEILICRIDVKEAFRQIPVDPSRASVFG 811
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig8194.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JAY4_9PHAE1.150e-2561.45C3H1-type domain-containing protein n=1 Tax=Ectoca... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig8194contigA-nodosum_M_contig8194:7683..7982 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog115417.EPrPW00000025354
Model size300
Max annot lvl115417.EPrPW00000025354|-
Hectar predicted targeting categoryother localisation
Exons1
Evalue2.89e-05
EggNOG OGs2EEVD@1|root,2SK6B@2759|Eukaryota,1MIKK@121069|Pythiales
Descriptionprotein.. Source PGD
Cds size300
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870138.8605433-CDS-A-nodosum_M_contig8194:7682..79821680870138.8605433-CDS-A-nodosum_M_contig8194:7682..7982Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig8194 7683..7982 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig8194.1.1prot_A-nodosum_M_contig8194.1.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig8194 7683..7982 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig8194.1.1

>prot_A-nodosum_M_contig8194.1.1 ID=prot_A-nodosum_M_contig8194.1.1|Name=mRNA_A-nodosum_M_contig8194.1.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=100bp
GRKLRIIHDLTFAGGAYRWSVNDKTDFSVAPPCELGHVFADVCRRIMYLR
QRHGVVARVMVCRIDVKDAFRQIPVDPLHAAKFGYAFDEYAVMDLFLQFG
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mRNA from alignment at A-nodosum_M_contig8194:7683..7982+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig8194.1.1 ID=mRNA_A-nodosum_M_contig8194.1.1|Name=mRNA_A-nodosum_M_contig8194.1.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=300bp|location=Sequence derived from alignment at A-nodosum_M_contig8194:7683..7982+ (Ascophyllum nodosum dioecious)
GGTAGGAAGCTGCGTATCATCCATGACTTGACGTTTGCAGGAGGTGCGTA
TCGCTGGAGTGTGAATGACAAAACAGATTTCTCCGTTGCCCCACCGTGTG
AGCTTGGTCACGTCTTCGCGGATGTTTGTAGACGGATTATGTACCTCCGC
CAGCGCCATGGCGTGGTTGCCCGCGTCATGGTGTGCCGTATAGATGTCAA
AGACGCGTTCCGCCAGATTCCCGTAGACCCCTTGCATGCTGCAAAATTTG
GTTACGCTTTTGACGAGTACGCTGTCATGGACCTGTTCCTGCAATTTGGG
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Coding sequence (CDS) from alignment at A-nodosum_M_contig8194:7683..7982+

>mRNA_A-nodosum_M_contig8194.1.1 ID=mRNA_A-nodosum_M_contig8194.1.1|Name=mRNA_A-nodosum_M_contig8194.1.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=300bp|location=Sequence derived from alignment at A-nodosum_M_contig8194:7683..7982+ (Ascophyllum nodosum dioecious)
GGTAGGAAGCTGCGTATCATCCATGACTTGACGTTTGCAGGAGGTGCGTA
TCGCTGGAGTGTGAATGACAAAACAGATTTCTCCGTTGCCCCACCGTGTG
AGCTTGGTCACGTCTTCGCGGATGTTTGTAGACGGATTATGTACCTCCGC
CAGCGCCATGGCGTGGTTGCCCGCGTCATGGTGTGCCGTATAGATGTCAA
AGACGCGTTCCGCCAGATTCCCGTAGACCCCTTGCATGCTGCAAAATTTG
GTTACGCTTTTGACGAGTACGCTGTCATGGACCTGTTCCTGCAATTTGGG
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