mRNA_A-nodosum_M_contig8185.1.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig8185.1.1
Unique NamemRNA_A-nodosum_M_contig8185.1.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
BLAST of mRNA_A-nodosum_M_contig8185.1.1 vs. uniprot
Match: A0A6H5KCR2_9PHAE (Cytochrome b5 heme-binding domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KCR2_9PHAE)

HSP 1 Score: 159 bits (401), Expect = 4.990e-48
Identity = 81/98 (82.65%), Postives = 90/98 (91.84%), Query Frame = 1
Query:    7 DTPKVYDVSSYLDDHPGGAEVMLELAGQDATNMFEDIGHSSDARTEMKKFLVGKLKLTEEEKENIALAAAKKLERASRKSGGLNPLAVLLLLLAISLG 300
            DTPKVYDVSSYL+DHPGGAEVM+E+AGQDATNMFEDIGHSSDARTEMKKF +G LKLT+EE+  IA  AAKK ERASR+ GGLNPLAVL+LLLAIS+G
Sbjct:   35 DTPKVYDVSSYLNDHPGGAEVMMEVAGQDATNMFEDIGHSSDARTEMKKFQIGLLKLTDEERAKIAQEAAKKAERASRQGGGLNPLAVLVLLLAISIG 132          
BLAST of mRNA_A-nodosum_M_contig8185.1.1 vs. uniprot
Match: A0A448ZES5_9STRA (Cytochrome b5 heme-binding domain-containing protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZES5_9STRA)

HSP 1 Score: 105 bits (261), Expect = 7.640e-27
Identity = 50/93 (53.76%), Postives = 73/93 (78.49%), Query Frame = 1
Query:   13 PKVYDVSSYLDDHPGGAEVMLELAGQDATNMFEDIGHSSDARTEMKKFLVGKLKLTEEEKENIALAAAKKLERASRKSGGLNPLAVLLLLLAI 291
            PKVYDVS YLDDHPGGAEVML+++GQ+A   FEDIGHS++AR E+KK+L+G  K++EEE E + +AA    E+ + ++GG + + +++ L+AI
Sbjct:   36 PKVYDVSKYLDDHPGGAEVMLDVSGQNADEFFEDIGHSAEARAELKKYLIGTYKMSEEELEKVRIAA----EKRANQTGGSSVMIIMVALVAI 124          
BLAST of mRNA_A-nodosum_M_contig8185.1.1 vs. uniprot
Match: A0A7S2R750_9STRA (Hypothetical protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2R750_9STRA)

HSP 1 Score: 106 bits (264), Expect = 8.900e-27
Identity = 54/96 (56.25%), Postives = 71/96 (73.96%), Query Frame = 1
Query:   13 PKVYDVSSYLDDHPGGAEVMLELAGQDATNMFEDIGHSSDARTEMKKFLVGKLKLTEEEKENIALAAAKKLERASRKSGGLNPLAVLLLLLAISLG 300
            PKVYD++ YLDDHPGGAEV+L+LAGQDA   FEDIGHSSDAR E+K++L+G LK+ E E    A AA  K ++ +   GG N + +L+ +LAI+ G
Sbjct:   78 PKVYDITKYLDDHPGGAEVLLDLAGQDADEFFEDIGHSSDARDELKRYLIGALKIDEAELARRAAAAEAKAKKEAE--GGSNLVFILIAILAIAFG 171          
BLAST of mRNA_A-nodosum_M_contig8185.1.1 vs. uniprot
Match: A0A1E7F1Z9_9STRA (Cytochrome b5 n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7F1Z9_9STRA)

HSP 1 Score: 102 bits (253), Expect = 1.350e-25
Identity = 50/94 (53.19%), Postives = 71/94 (75.53%), Query Frame = 1
Query:   16 KVYDVSSYLDDHPGGAEVMLELAGQDATNMFEDIGHSSDARTEMKKFLVGKLKLTEEEKENIALAAAKKLERASRKSGGLNPLAVLLLLLAISL 297
            KVYDVS YLDDHPGGAEVML+++GQ+A   FEDIGHS DAR E+KK+L+G  KL+EEE E + + A K+ ++     GG +P+ +++L+  I++
Sbjct:   39 KVYDVSKYLDDHPGGAEVMLDVSGQNADEFFEDIGHSGDARKELKKYLIGTYKLSEEEIEKLKIEAEKRAQQ-----GGGSPMIIIILVALIAI 127          
BLAST of mRNA_A-nodosum_M_contig8185.1.1 vs. uniprot
Match: A0A7S1E0H8_9STRA (Hypothetical protein n=1 Tax=Thalassionema nitzschioides TaxID=33649 RepID=A0A7S1E0H8_9STRA)

HSP 1 Score: 99.4 bits (246), Expect = 1.510e-24
Identity = 49/96 (51.04%), Postives = 70/96 (72.92%), Query Frame = 1
Query:   13 PKVYDVSSYLDDHPGGAEVMLELAGQDATNMFEDIGHSSDARTEMKKFLVGKLKLTEEEKENIALAAAKKLERASRKSGGLNPLAVLLLLLAISLG 300
            PKVYDV+ YLDDHPGGAEVML++AGQDA   FEDIGHS+DAR E+K+ L+G L + +  K  +   A K L++   K G L+P+ +++L+  +++G
Sbjct:   35 PKVYDVTKYLDDHPGGAEVMLDVAGQDADEFFEDIGHSADAREELKRHLIGDLLMDDATKAKMKADAEKALKK---KEGSLSPVLMIVLVAILAIG 127          
BLAST of mRNA_A-nodosum_M_contig8185.1.1 vs. uniprot
Match: A0A7S2U5A0_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2U5A0_9STRA)

HSP 1 Score: 99.0 bits (245), Expect = 1.540e-24
Identity = 54/100 (54.00%), Postives = 71/100 (71.00%), Query Frame = 1
Query:   13 PKVYDVSSYLDDHPGGAEVMLELAGQDATNMFEDIGHSSDARTEMKKFLVGKLKLTEEEKENIALAAAKKLERASRK---SGGLNPLAVLLL-LLAISLG 300
            PKVYD++SYLDDHPGGAEVML+++GQD    FEDIGHS+DAR E+KK+L+G LK+ E          A+ LE A RK   +GG   + VLL+ +LA+ +G
Sbjct:   25 PKVYDITSYLDDHPGGAEVMLDVSGQDGDEFFEDIGHSNDAREELKKYLIGTLKVDE-------ATLARNLELAKRKQEGAGGSGQMMVLLIAILALIIG 117          
BLAST of mRNA_A-nodosum_M_contig8185.1.1 vs. uniprot
Match: A0A7S3P723_9STRA (Hypothetical protein n=2 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3P723_9STRA)

HSP 1 Score: 96.7 bits (239), Expect = 2.040e-23
Identity = 49/94 (52.13%), Postives = 68/94 (72.34%), Query Frame = 1
Query:   13 PKVYDVSSYLDDHPGGAEVMLELAGQDATNMFEDIGHSSDARTEMKKFLVGKLKLTEEEKENIALAAAKKLERASRKSGGLNPLAVLLLLLAIS 294
            P VYDV+ YLDDHPGGAEVML++AGQDA   FEDIGHS +AR E+KK+L+G LK+ E  K+ +    A+K   A+ K GG   + ++ ++LA++
Sbjct:   36 PMVYDVTKYLDDHPGGAEVMLDVAGQDADEFFEDIGHSKEAREELKKYLIGSLKIDEATKKKMEEEKARK---AAAKGGGFPLVPLVGIILAVA 126          
BLAST of mRNA_A-nodosum_M_contig8185.1.1 vs. uniprot
Match: A0A7S3V505_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3V505_9STRA)

HSP 1 Score: 96.3 bits (238), Expect = 2.390e-23
Identity = 54/98 (55.10%), Postives = 72/98 (73.47%), Query Frame = 1
Query:    4 TDTPKVYDVSSYLDDHPGGAEVMLELAGQDATNMFEDIGHSSDARTEMKKFLVGKLKLTEEEKENIALAAAKKLERASRKSGGLNPLAVLL-LLLAIS 294
            T  PKVYDV++YLDDHPGGAEV+L+++GQD+   FEDIGHS DAR E++K LVG LKL E E +  A AA    + A+ K+GG +   VL+ ++LAI+
Sbjct:   32 TGGPKVYDVTTYLDDHPGGAEVLLDVSGQDSDEFFEDIGHSKDAREELEKLLVGVLKLDEAEIQRRAEAA----QAAADKAGGGSTFIVLIGIILAIA 125          
BLAST of mRNA_A-nodosum_M_contig8185.1.1 vs. uniprot
Match: A0A4D9D6Z9_9STRA (Cytochrome b5 heme-binding domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D6Z9_9STRA)

HSP 1 Score: 95.9 bits (237), Expect = 3.300e-23
Identity = 54/101 (53.47%), Postives = 74/101 (73.27%), Query Frame = 1
Query:    4 TDTPKVYDVSSYLDDHPGGAEVMLELAGQDATNMFEDIGHSSDARTEMKKFLVGKLKLTEEEKENIALAAAKKLERASR--KSGGLNPLAVLLLLLAISLG 300
            T  PKVYDV+ YL++HPGG+EV+L+ AG+ A  MFEDIGHS DA+ ++K  +VG+L  T E+ E +A   ++K+ RAS     GGLNP AV++LL+AI LG
Sbjct:   29 TGGPKVYDVTKYLEEHPGGSEVLLDHAGKYADEMFEDIGHSGDAKEKLKTLMVGEL--TPEDVEKLA---SEKVSRASELPSKGGLNPFAVVVLLVAIVLG 124          
BLAST of mRNA_A-nodosum_M_contig8185.1.1 vs. uniprot
Match: K0TGI0_THAOC (Cytochrome b5 heme-binding domain-containing protein n=2 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0TGI0_THAOC)

HSP 1 Score: 95.1 bits (235), Expect = 7.790e-23
Identity = 46/62 (74.19%), Postives = 52/62 (83.87%), Query Frame = 1
Query:    1 ATDTPKVYDVSSYLDDHPGGAEVMLELAGQDATNMFEDIGHSSDARTEMKKFLVGKLKLTEE 186
            AT  PKVYDVS+YLDDHPGGAEVML++ GQDA   FEDIGHS+DAR E+ K L+G LKLTEE
Sbjct:   32 ATGGPKVYDVSTYLDDHPGGAEVMLDVGGQDADEFFEDIGHSNDARDELAKHLIGTLKLTEE 93          
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig8185.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KCR2_9PHAE4.990e-4882.65Cytochrome b5 heme-binding domain-containing prote... [more]
A0A448ZES5_9STRA7.640e-2753.76Cytochrome b5 heme-binding domain-containing prote... [more]
A0A7S2R750_9STRA8.900e-2756.25Hypothetical protein n=1 Tax=Eucampia antarctica T... [more]
A0A1E7F1Z9_9STRA1.350e-2553.19Cytochrome b5 n=1 Tax=Fragilariopsis cylindrus CCM... [more]
A0A7S1E0H8_9STRA1.510e-2451.04Hypothetical protein n=1 Tax=Thalassionema nitzsch... [more]
A0A7S2U5A0_9STRA1.540e-2454.00Hypothetical protein n=1 Tax=Attheya septentrional... [more]
A0A7S3P723_9STRA2.040e-2352.13Hypothetical protein n=2 Tax=Amphora coffeiformis ... [more]
A0A7S3V505_9STRA2.390e-2355.10Hypothetical protein n=1 Tax=Chaetoceros debilis T... [more]
A0A4D9D6Z9_9STRA3.300e-2353.47Cytochrome b5 heme-binding domain-containing prote... [more]
K0TGI0_THAOC7.790e-2374.19Cytochrome b5 heme-binding domain-containing prote... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig8185contigA-nodosum_M_contig8185:21178..22110 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D7FNS4
PFAMsCyt-b5,FAD_binding_2
Model size327
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons2
Evalue4.06e-49
EggNOG OGsCOG5274@1|root,KOG0537@2759|Eukaryota
Descriptionheme binding
Cds size327
COG categoryCI
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870137.717003-CDS-A-nodosum_M_contig8185:21177..213301680870137.717003-CDS-A-nodosum_M_contig8185:21177..21330Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig8185 21178..21330 -
1680870137.7321947-CDS-A-nodosum_M_contig8185:21936..221101680870137.7321947-CDS-A-nodosum_M_contig8185:21936..22110Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig8185 21937..22110 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig8185.1.1prot_A-nodosum_M_contig8185.1.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig8185 21178..22110 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig8185.1.1

>prot_A-nodosum_M_contig8185.1.1 ID=prot_A-nodosum_M_contig8185.1.1|Name=mRNA_A-nodosum_M_contig8185.1.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=109bp
ATDTPKVYDVSSYLDDHPGGAEVMLELAGQDATNMFEDIGHSSDARTEMK
KFLVGKLKLTEEEKENIALAAAKKLERASRKSGGLNPLAVLLLLLAISLG
EGSDGRAL*
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mRNA from alignment at A-nodosum_M_contig8185:21178..22110-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig8185.1.1 ID=mRNA_A-nodosum_M_contig8185.1.1|Name=mRNA_A-nodosum_M_contig8185.1.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=933bp|location=Sequence derived from alignment at A-nodosum_M_contig8185:21178..22110- (Ascophyllum nodosum dioecious)
GCGACAGATACGCCTAAGGTGTACGACGTGTCGAGCTACCTGGATGACCA CCCGGGGGGCGCGGAGGTGATGCTGGAGCTGGCGGGGCAAGACGCCACGA ACATGTTCGAGGACATCGGCCACTCTTCGGACGCACGGACAGAGATGAAG AAGTTCCTCGTAGGGAAACTCAAGGTGCAACATCTTTGGTAGCACAGTCA GTATGGTATATCATCATACGCCTCTGCAGTACAAGACTGTTGACTTTTGT TTCCCACGAAGCGGAATTGGTGGCATGTCTCGACATCGAGTACTCATGCG CTTGAAAACAAACGAATTTCCTTGTTACATGGGGGAGCGGACAGGATAGG ATTGGAGAGAAGCGCAACGGAGACTTTGTTGTTAATACCTGGTATTAATA GTTTTTACAGTGTTAGCTCTACAGTGCTAGAGTGCTTTGGGCTGCAAATC CAAATCCGGTAGGGAATCAAGAAACGACTCCGTGTTTCCATCAACATTTC TGGTGCTGAAACGTAACGCAAGATCTCAGCTAACAGCGTGTTGAGGTTGC GAAAACCTGACCTGGAATGTAGAGCGCACACAGACCTGGTTGCGAGGTAA TTGATACTCACGCTTGCCCCGCTTTTTGGGTCCCGGACCACTACTAAAAC TAACTACTACTATTAATACTACTTAGTGTCAGTGTTGATGTTCATACTAT TACCATCAGTAGTAGTAATATTAATAGCATCTCTCGCTGACGGGTGGGAT TCTTGGGCGCCCCTTTTAACGTCTGCACAGTTGACGGAGGAGGAAAAGGA GAATATTGCTCTTGCAGCGGCGAAAAAGTTGGAGCGGGCTAGCAGGAAAA GCGGGGGGTTGAACCCTCTCGCAGTCTTACTTCTGCTTCTTGCGATCTCT CTAGGTGAGGGGAGTGACGGCCGTGCTTTGTAA
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Coding sequence (CDS) from alignment at A-nodosum_M_contig8185:21178..22110-

>mRNA_A-nodosum_M_contig8185.1.1 ID=mRNA_A-nodosum_M_contig8185.1.1|Name=mRNA_A-nodosum_M_contig8185.1.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=327bp|location=Sequence derived from alignment at A-nodosum_M_contig8185:21178..22110- (Ascophyllum nodosum dioecious)
GCGACAGATACGCCTAAGGTGTACGACGTGTCGAGCTACCTGGATGACCA
CCCGGGGGGCGCGGAGGTGATGCTGGAGCTGGCGGGGCAAGACGCCACGA
ACATGTTCGAGGACATCGGCCACTCTTCGGACGCACGGACAGAGATGAAG
AAGTTCCTCGTAGGGAAACTCAAGTTGACGGAGGAGGAAAAGGAGAATAT
TGCTCTTGCAGCGGCGAAAAAGTTGGAGCGGGCTAGCAGGAAAAGCGGGG
GGTTGAACCCTCTCGCAGTCTTACTTCTGCTTCTTGCGATCTCTCTAGGT
GAGGGGAGTGACGGCCGTGCTTTGTAA
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