mRNA_A-nodosum_M_contig8.91.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig8.91.1
Unique NamemRNA_A-nodosum_M_contig8.91.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
[Close]
BLAST of mRNA_A-nodosum_M_contig8.91.1 vs. uniprot
Match: A0A6H5K4W1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4W1_9PHAE)

HSP 1 Score: 58.9 bits (141), Expect = 6.140e-9
Identity = 25/49 (51.02%), Postives = 35/49 (71.43%), Query Frame = 1 
Query:    7 KQKAVLLQEGFSNEEIRSAYQAWNFIDAALQSESDRSILKRCKSPREVF 153
            K +  LL++GFS   IR  Y AWNF+ AAL +E+D++IL+RC +PRE  
Sbjct:  135 KPQTALLEQGFSYAAIRKTYLAWNFLSAALTTETDKAILRRCTNPREAL 183
[Close]
BLAST of mRNA_A-nodosum_M_contig8.91.1 vs. uniprot
Match: A0A6H5J624_9PHAE (CCHC-type domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J624_9PHAE)

HSP 1 Score: 58.9 bits (141), Expect = 8.080e-9
Identity = 25/49 (51.02%), Postives = 35/49 (71.43%), Query Frame = 1 
Query:    7 KQKAVLLQEGFSNEEIRSAYQAWNFIDAALQSESDRSILKRCKSPREVF 153
            K +  LL++GFS   IR  Y AWNF+ AAL +E+D++IL+RC +PRE  
Sbjct:   64 KPQTALLEQGFSYAAIRKTYLAWNFLSAALTTETDKAILRRCTNPREAL 112
[Close]
BLAST of mRNA_A-nodosum_M_contig8.91.1 vs. uniprot
Match: A0A6H5JE80_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JE80_9PHAE)

HSP 1 Score: 58.9 bits (141), Expect = 8.210e-9
Identity = 25/49 (51.02%), Postives = 35/49 (71.43%), Query Frame = 1 
Query:    7 KQKAVLLQEGFSNEEIRSAYQAWNFIDAALQSESDRSILKRCKSPREVF 153
            K +  LL++GFS   IR  Y AWNF+ AAL +E+D++IL+RC +PRE  
Sbjct:  234 KPQTALLEQGFSYAAIRKTYLAWNFLSAALTTETDKAILRRCMNPREAL 282
[Close]
BLAST of mRNA_A-nodosum_M_contig8.91.1 vs. uniprot
Match: A0A6H5KEL4_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEL4_9PHAE)

HSP 1 Score: 58.9 bits (141), Expect = 8.300e-9
Identity = 25/49 (51.02%), Postives = 35/49 (71.43%), Query Frame = 1 
Query:    7 KQKAVLLQEGFSNEEIRSAYQAWNFIDAALQSESDRSILKRCKSPREVF 153
            K +  LL++GFS   IR  Y AWNF+ AAL +E+D++IL+RC +PRE  
Sbjct:  215 KPQTALLEQGFSYAAIRKTYLAWNFLSAALTTETDKAILRRCTNPREAL 263
[Close]
BLAST of mRNA_A-nodosum_M_contig8.91.1 vs. uniprot
Match: A0A6H5K8Y7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8Y7_9PHAE)

HSP 1 Score: 57.4 bits (137), Expect = 2.600e-8
Identity = 24/49 (48.98%), Postives = 34/49 (69.39%), Query Frame = 1 
Query:    7 KQKAVLLQEGFSNEEIRSAYQAWNFIDAALQSESDRSILKRCKSPREVF 153
            K +   L++GFS   IR  Y AWNF+ AAL +E+D++IL+RC +PRE  
Sbjct:  256 KPQTAFLEQGFSYAAIRKTYLAWNFLSAALTTETDKAILRRCTNPREAL 304
[Close]
BLAST of mRNA_A-nodosum_M_contig8.91.1 vs. uniprot
Match: A0A6H5JNY2_9PHAE (CCHC-type domain-containing protein n=5 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNY2_9PHAE)

HSP 1 Score: 53.5 bits (127), Expect = 6.640e-7
Identity = 23/49 (46.94%), Postives = 33/49 (67.35%), Query Frame = 1 
Query:    7 KQKAVLLQEGFSNEEIRSAYQAWNFIDAALQSESDRSILKRCKSPREVF 153
            K +  LL++GFS   IR  Y AWNF+ AAL +E+D++I +R  +PRE  
Sbjct:  192 KPQTALLEQGFSYAAIRKTYLAWNFLSAALTTETDKAIFRRSTNPREAL 240
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig8.91.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A6H5K4W1_9PHAE6.140e-951.02Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5J624_9PHAE8.080e-951.02CCHC-type domain-containing protein n=2 Tax=Ectoca... [more]
A0A6H5JE80_9PHAE8.210e-951.02Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KEL4_9PHAE8.300e-951.02CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5K8Y7_9PHAE2.600e-848.98Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JNY2_9PHAE6.640e-746.94CCHC-type domain-containing protein n=5 Tax=Ectoca... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig8contigA-nodosum_M_contig8:1374858..1375015 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size158
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Cds size156
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870085.1327467-CDS-A-nodosum_M_contig8:1374857..13750131680870085.1327467-CDS-A-nodosum_M_contig8:1374857..1375013Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig8 1374858..1375013 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig8.91.1prot_A-nodosum_M_contig8.91.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig8 1374858..1375013 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig8.91.1

>prot_A-nodosum_M_contig8.91.1 ID=prot_A-nodosum_M_contig8.91.1|Name=mRNA_A-nodosum_M_contig8.91.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=52bp
PLKQKAVLLQEGFSNEEIRSAYQAWNFIDAALQSESDRSILKRCKSPREV
FE
back to top

mRNA from alignment at A-nodosum_M_contig8:1374858..1375015+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig8.91.1 ID=mRNA_A-nodosum_M_contig8.91.1|Name=mRNA_A-nodosum_M_contig8.91.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=158bp|location=Sequence derived from alignment at A-nodosum_M_contig8:1374858..1375015+ (Ascophyllum nodosum dioecious)
CCGCTGAAACAAAAGGCAGTGTTGTTGCAGGAAGGTTTTTCGAACGAGGA
GATCAGAAGTGCATACCAGGCGTGGAATTTTATAGATGCAGCTCTTCAGA
GTGAGTCGGATCGATCCATACTTAAAAGATGCAAATCGCCGCGGGAAGTT
TTTGAACG
back to top

Coding sequence (CDS) from alignment at A-nodosum_M_contig8:1374858..1375015+

>mRNA_A-nodosum_M_contig8.91.1 ID=mRNA_A-nodosum_M_contig8.91.1|Name=mRNA_A-nodosum_M_contig8.91.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=156bp|location=Sequence derived from alignment at A-nodosum_M_contig8:1374858..1375015+ (Ascophyllum nodosum dioecious)
CCGCTGAAACAAAAGGCAGTGTTGTTGCAGGAAGGTTTTTCGAACGAGGA
GATCAGAAGTGCATACCAGGCGTGGAATTTTATAGATGCAGCTCTTCAGA
GTGAGTCGGATCGATCCATACTTAAAAGATGCAAATCGCCGCGGGAAGTT
TTTGAA
back to top