mRNA_A-nodosum_M_contig8.5.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig8.5.1
Unique NamemRNA_A-nodosum_M_contig8.5.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
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BLAST of mRNA_A-nodosum_M_contig8.5.1 vs. uniprot
Match: D7G6N9_ECTSI (Myosin 29 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6N9_ECTSI)

HSP 1 Score: 57.0 bits (136), Expect = 5.950e-8
Identity = 31/58 (53.45%), Postives = 37/58 (63.79%), Query Frame = 1 
Query:    4 SVKKGRGGTNKNALAAVAQFLQGLSGGEEEPTLRDILEEQPAGFIQARDSASTAGKAI 177
            S+K G+    KN LAA+   LQGLS GEE+PTL DIL EQ   F +  DS +  GKAI
Sbjct: 2411 SMKAGKK-NGKNTLAAMTMLLQGLSDGEEDPTLEDILSEQTGEFAEEGDSVAACGKAI 2467
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig8.5.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G6N9_ECTSI5.950e-853.45Myosin 29 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig8contigA-nodosum_M_contig8:8396..8987 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7G6N9
PFAMsCBS,IQ,MyTH4,Myosin_head,PB1
Model size184
Max annot lvl2759|Eukaryota
KEGG koko:K10357
Hectar predicted targeting categoryother localisation
Exons2
Evalue9.76e-09
EggNOG OGsCOG5022@1|root,KOG0160@2759|Eukaryota
Descriptionmotor activity
Cds size183
COG categoryZ
BRITEko00000,ko03019,ko03029,ko04131,ko04812
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870075.5366986-CDS-A-nodosum_M_contig8:8395..84851680870075.5366986-CDS-A-nodosum_M_contig8:8395..8485Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig8 8396..8485 +
1680870075.625902-CDS-A-nodosum_M_contig8:8894..89871680870075.625902-CDS-A-nodosum_M_contig8:8894..8987Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig8 8895..8987 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig8.5.1prot_A-nodosum_M_contig8.5.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig8 8396..8987 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig8.5.1

>prot_A-nodosum_M_contig8.5.1 ID=prot_A-nodosum_M_contig8.5.1|Name=mRNA_A-nodosum_M_contig8.5.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=61bp
LSVKKGRGGTNKNALAAVAQFLQGLSGGEEEPTLRDILEEQPAGFIQARD
SASTAGKAIAT
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mRNA from alignment at A-nodosum_M_contig8:8396..8987+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig8.5.1 ID=mRNA_A-nodosum_M_contig8.5.1|Name=mRNA_A-nodosum_M_contig8.5.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=592bp|location=Sequence derived from alignment at A-nodosum_M_contig8:8396..8987+ (Ascophyllum nodosum dioecious)
CTCTCGGTGAAGAAGGGGCGAGGAGGCACAAACAAGAACGCCCTCGCAGC
GGTGGCGCAATTCCTTCAGGGTCTTTCCGGCGGCGAAGAGGTGGAGCGAT
TCGATCCGATCCGTGTTGTTTTTGTAGCTCTTATCGTACCGCTTCTCAGG
ACGCTATGTATAGTTTTTGTGACATTGTAGATAATGAGGCGTCCGATCGG
CAAGAGTGTCTCGTGATCAGGGAAAAGGAGTGCGGACTCACGCCGGACGT
GATGGTGTGGGACTTCGCTGGAGGATATACTCCTTATAAGATGTCCAGGA
TGGTCTCAAAATACCGTTCCATGTACCTCAGCTACTGGCGATGAGGTTTG
CCTCTGTTTTGAGACGATGCAATAAGATCTTCGGTAGAGCTCTGTACGAC
TATTATATATTACATGCTATATATCGACTAGAGCCGCAAgGGGCACGTCC
CCGTCTCGCATCGCATCGCCATGTGCTGACAACGAATGCTCTGATGCAGG
AACCCACGCTAAGAGACATTCTTGAGGAGCAACCGGCGGGATTTATACAA
GCACGAGACAGCGCCTCCACCGCGGGGAAGGCGATAGCCACC
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Coding sequence (CDS) from alignment at A-nodosum_M_contig8:8396..8987+

>mRNA_A-nodosum_M_contig8.5.1 ID=mRNA_A-nodosum_M_contig8.5.1|Name=mRNA_A-nodosum_M_contig8.5.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=183bp|location=Sequence derived from alignment at A-nodosum_M_contig8:8396..8987+ (Ascophyllum nodosum dioecious)
CTCTCGGTGAAGAAGGGGCGAGGAGGCACAAACAAGAACGCCCTCGCAGC
GGTGGCGCAATTCCTTCAGGGTCTTTCCGGCGGCGAAGAGGAACCCACGC
TAAGAGACATTCTTGAGGAGCAACCGGCGGGATTTATACAAGCACGAGAC
AGCGCCTCCACCGCGGGGAAGGCGATAGCCACC
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