mRNA_A-nodosum_M_contig1279.8.1 (mRNA) Ascophyllum nodosum dioecious
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Overview
Homology
BLAST of mRNA_A-nodosum_M_contig1279.8.1 vs. uniprot
Match: D7FXB9_ECTSI (Mitochondrial inner membrane protease subunit 2 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FXB9_ECTSI) HSP 1 Score: 156 bits (395), Expect = 3.560e-44 Identity = 70/90 (77.78%), Postives = 78/90 (86.67%), Query Frame = 1
Query: 1 RNPFDPKERMVKRLIAVGGDWVRPLGSRHDVLRVPQGCCWVEGDNPRVSGDSNQFGPIPLALIEAKVTHVLWPPRRIGPLDQDLPEAHRG 270
RNPFDPKER+VKRLI V GDWVRP G++H+++RVP+G CWVEGDN VSGDSN FGPIPLALIEAKVTHVLWPP R+ L QDLPE HRG
Sbjct: 80 RNPFDPKERVVKRLIGVDGDWVRPRGNKHNLMRVPEGYCWVEGDNHGVSGDSNHFGPIPLALIEAKVTHVLWPPGRMRSLGQDLPEIHRG 169
BLAST of mRNA_A-nodosum_M_contig1279.8.1 vs. uniprot
Match: A0A2K1K4M5_PHYPA (Mitochondrial inner membrane protease subunit 2 n=2 Tax=Physcomitrium patens TaxID=3218 RepID=A0A2K1K4M5_PHYPA) HSP 1 Score: 113 bits (283), Expect = 2.150e-27 Identity = 51/86 (59.30%), Postives = 65/86 (75.58%), Query Frame = 1
Query: 1 RNPFDPKERMVKRLIAVGGDWVRPLGSRHDVLRVPQGCCWVEGDNPRVSGDSNQFGPIPLALIEAKVTHVLWPPRRIGPLDQDLPE 258
R+P +PK +VKRLIA+ GDWV G+ +D+L+VP+G CWVEGDN +S DS FGPIPL L++ KVTHV+WPP R GP+ LPE
Sbjct: 82 RSPLEPKMWLVKRLIALQGDWVTVPGT-YDILQVPKGHCWVEGDNAEISLDSKSFGPIPLGLMKGKVTHVVWPPSRFGPVASHLPE 166
BLAST of mRNA_A-nodosum_M_contig1279.8.1 vs. uniprot
Match: A0A388KQ27_CHABU (Mitochondrial inner membrane protease subunit 2 n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388KQ27_CHABU) HSP 1 Score: 111 bits (277), Expect = 2.240e-27 Identity = 49/85 (57.65%), Postives = 65/85 (76.47%), Query Frame = 1
Query: 4 NPFDPKERMVKRLIAVGGDWVRPLGSRHDVLRVPQGCCWVEGDNPRVSGDSNQFGPIPLALIEAKVTHVLWPPRRIGPLDQDLPE 258
+P +PK +VKRLIA+ GDWV G+ +D+ +VP+G CWVEGDNP VS DS FGP+PLAL+E +VTHV+WPP R G ++ +PE
Sbjct: 17 SPEEPKVCLVKRLIALQGDWVSVPGT-YDITQVPKGHCWVEGDNPMVSSDSKAFGPVPLALLEGRVTHVIWPPTRAGRVESRVPE 100
BLAST of mRNA_A-nodosum_M_contig1279.8.1 vs. uniprot
Match: A0A2G5CLM4_AQUCA (Mitochondrial inner membrane protease subunit 2 n=1 Tax=Aquilegia coerulea TaxID=218851 RepID=A0A2G5CLM4_AQUCA) HSP 1 Score: 113 bits (282), Expect = 2.240e-27 Identity = 53/98 (54.08%), Postives = 70/98 (71.43%), Query Frame = 1
Query: 1 RNPFDPKERMVKRLIAVGGDWVRPLGSRHDVLRVPQGCCWVEGDNPRVSGDSNQFGPIPLALIEAKVTHVLWPPRRIGPLDQDLPEAHRGFRGR*IQY 294
R+P D KE+ +KR+IA+ GDW+ S + L++P+G CWVEGDNP S DS FGPIPLALIE KVTH++WPP+R+G +++ LPE GR I Y
Sbjct: 79 RSPNDYKEKQIKRIIALEGDWINVPNS-FETLKIPRGHCWVEGDNPTNSVDSRSFGPIPLALIEGKVTHIIWPPQRVGKVEKILPE------GRLISY 169
BLAST of mRNA_A-nodosum_M_contig1279.8.1 vs. uniprot
Match: A0A176VCD5_MARPO (Mitochondrial inner membrane protease subunit 2 n=2 Tax=Marchantia polymorpha TaxID=3197 RepID=A0A176VCD5_MARPO) HSP 1 Score: 110 bits (276), Expect = 2.030e-26 Identity = 50/94 (53.19%), Postives = 71/94 (75.53%), Query Frame = 1
Query: 1 RNPFDPKERMVKRLIAVGGDWVRPLGSRHDVLRVPQGCCWVEGDNPRVSGDSNQFGPIPLALIEAKVTHVLWPPRRIGPLDQDLPEAHRGFRGR 282
R+P DPKE +VKRLIA+ DW+ G+ +++L++P+G CWVEGDN VS DS +FGPIP+AL+ +VTHV+WPP+R+GP++ P R F G+
Sbjct: 81 RSPQDPKEYLVKRLIALQEDWITVPGT-YEILQIPKGHCWVEGDNVDVSLDSKEFGPIPIALMRGRVTHVVWPPQRLGPVESKYPTG-RVFSGK 172
BLAST of mRNA_A-nodosum_M_contig1279.8.1 vs. uniprot
Match: A0A2P5BQT5_PARAD (Mitochondrial inner membrane protease subunit 2 n=2 Tax=Cannabaceae TaxID=3481 RepID=A0A2P5BQT5_PARAD) HSP 1 Score: 110 bits (275), Expect = 2.240e-26 Identity = 49/87 (56.32%), Postives = 66/87 (75.86%), Query Frame = 1
Query: 4 NPFDPKERMVKRLIAVGGDWVRPLGSRH--DVLRVPQGCCWVEGDNPRVSGDSNQFGPIPLALIEAKVTHVLWPPRRIGPLDQDLPE 258
+P + KER +KR+I + GDWV G RH DV RVPQG CWVEGDNP S DSN FGP+PL L++ +VTH++WPP+R+G +++ +PE
Sbjct: 77 SPQNHKERHIKRIIGLPGDWV---GIRHSSDVFRVPQGHCWVEGDNPASSMDSNTFGPVPLGLVQGRVTHIVWPPQRLGAVEKRVPE 160
BLAST of mRNA_A-nodosum_M_contig1279.8.1 vs. uniprot
Match: A0A6P4APA3_ZIZJJ (Mitochondrial inner membrane protease subunit 2 n=3 Tax=Ziziphus jujuba TaxID=326968 RepID=A0A6P4APA3_ZIZJJ) HSP 1 Score: 109 bits (272), Expect = 6.920e-26 Identity = 48/86 (55.81%), Postives = 66/86 (76.74%), Query Frame = 1
Query: 4 NPFDPKERMVKRLIAVGGDWVRPLGSRH--DVLRVPQGCCWVEGDNPRVSGDSNQFGPIPLALIEAKVTHVLWPPRRIGPLDQDLP 255
+P + KE+ +KR+IA+ GDW+ G RH DVLR+P G CWVEGDNP S DSN FGPIPL L++ +VTH++WPP+RIG +++ +P
Sbjct: 81 SPSNHKEKHIKRVIALPGDWI---GIRHTSDVLRIPDGHCWVEGDNPSSSMDSNSFGPIPLGLVKGRVTHIVWPPQRIGAVEKRIP 163
BLAST of mRNA_A-nodosum_M_contig1279.8.1 vs. uniprot
Match: W9SRW4_9ROSA (Mitochondrial inner membrane protease subunit 2 n=1 Tax=Morus notabilis TaxID=981085 RepID=W9SRW4_9ROSA) HSP 1 Score: 108 bits (269), Expect = 1.720e-25 Identity = 47/82 (57.32%), Postives = 63/82 (76.83%), Query Frame = 1
Query: 19 KERMVKRLIAVGGDWVRPLGSRH--DVLRVPQGCCWVEGDNPRVSGDSNQFGPIPLALIEAKVTHVLWPPRRIGPLDQDLPE 258
KER +KR+I + GDW+ G RH DVLR+P+G CWVEGDNP S DSN FGP+PL L+ +VTH++WPP+RIG +++ +PE
Sbjct: 82 KERHIKRIIGLPGDWI---GIRHCSDVLRIPEGHCWVEGDNPASSMDSNTFGPVPLGLVAGRVTHIVWPPQRIGAVERKVPE 160
BLAST of mRNA_A-nodosum_M_contig1279.8.1 vs. uniprot
Match: A0A2P2J7I6_RHIMU (Mitochondrial inner membrane protease subunit 2 n=1 Tax=Rhizophora mucronata TaxID=61149 RepID=A0A2P2J7I6_RHIMU) HSP 1 Score: 106 bits (264), Expect = 1.850e-25 Identity = 45/81 (55.56%), Postives = 61/81 (75.31%), Query Frame = 1
Query: 4 NPFDPKERMVKRLIAVGGDWVRPLGSRHDVLRVPQGCCWVEGDNPRVSGDSNQFGPIPLALIEAKVTHVLWPPRRIGPLDQ 246
+P + KE+ VKR+I + GDW+ S HDV+++PQG CWVEGD+P S DS FGPIPL LI +VTH++WPPRR+G +D+
Sbjct: 18 SPINHKEKYVKRIIGLPGDWIGTPYS-HDVVKIPQGHCWVEGDDPSFSMDSRSFGPIPLGLINGRVTHIVWPPRRVGKVDR 97
BLAST of mRNA_A-nodosum_M_contig1279.8.1 vs. uniprot
Match: A0A8K0HBZ9_9ROSA (Uncharacterized protein n=2 Tax=Rhamnella rubrinervis TaxID=2594499 RepID=A0A8K0HBZ9_9ROSA) HSP 1 Score: 107 bits (268), Expect = 2.420e-25 Identity = 47/85 (55.29%), Postives = 65/85 (76.47%), Query Frame = 1
Query: 7 PFDPKERMVKRLIAVGGDWVRPLGSRH--DVLRVPQGCCWVEGDNPRVSGDSNQFGPIPLALIEAKVTHVLWPPRRIGPLDQDLP 255
P + KE+ +KR+IA+ GDW+ G RH DV R+P+G CWVEGDNP S DSN FGPIPL L++ +VTH++WPP+RIG +++ +P
Sbjct: 78 PSNHKEKHIKRIIALPGDWI---GIRHCSDVRRIPEGHCWVEGDNPSSSMDSNSFGPIPLGLVKGRVTHIVWPPQRIGAVEKRIP 159 The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1279.8.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_A-nodosum_M_contig1279.8.1 >prot_A-nodosum_M_contig1279.8.1 ID=prot_A-nodosum_M_contig1279.8.1|Name=mRNA_A-nodosum_M_contig1279.8.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=86bp MVKRLIAVGGDWVRPLGSRHDVLRVPQGCCWVEGDNPRVSGDSNQFGPIPback to top mRNA from alignment at A-nodosum_M_contig1279:64884..66296+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_A-nodosum_M_contig1279.8.1 ID=mRNA_A-nodosum_M_contig1279.8.1|Name=mRNA_A-nodosum_M_contig1279.8.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=1413bp|location=Sequence derived from alignment at A-nodosum_M_contig1279:64884..66296+ (Ascophyllum nodosum dioecious)back to top Coding sequence (CDS) from alignment at A-nodosum_M_contig1279:64884..66296+ >mRNA_A-nodosum_M_contig1279.8.1 ID=mRNA_A-nodosum_M_contig1279.8.1|Name=mRNA_A-nodosum_M_contig1279.8.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=258bp|location=Sequence derived from alignment at A-nodosum_M_contig1279:64884..66296+ (Ascophyllum nodosum dioecious)back to top |