mRNA_A-nodosum_M_contig1279.8.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig1279.8.1
Unique NamemRNA_A-nodosum_M_contig1279.8.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
BLAST of mRNA_A-nodosum_M_contig1279.8.1 vs. uniprot
Match: D7FXB9_ECTSI (Mitochondrial inner membrane protease subunit 2 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FXB9_ECTSI)

HSP 1 Score: 156 bits (395), Expect = 3.560e-44
Identity = 70/90 (77.78%), Postives = 78/90 (86.67%), Query Frame = 1
Query:    1 RNPFDPKERMVKRLIAVGGDWVRPLGSRHDVLRVPQGCCWVEGDNPRVSGDSNQFGPIPLALIEAKVTHVLWPPRRIGPLDQDLPEAHRG 270
            RNPFDPKER+VKRLI V GDWVRP G++H+++RVP+G CWVEGDN  VSGDSN FGPIPLALIEAKVTHVLWPP R+  L QDLPE HRG
Sbjct:   80 RNPFDPKERVVKRLIGVDGDWVRPRGNKHNLMRVPEGYCWVEGDNHGVSGDSNHFGPIPLALIEAKVTHVLWPPGRMRSLGQDLPEIHRG 169          
BLAST of mRNA_A-nodosum_M_contig1279.8.1 vs. uniprot
Match: A0A2K1K4M5_PHYPA (Mitochondrial inner membrane protease subunit 2 n=2 Tax=Physcomitrium patens TaxID=3218 RepID=A0A2K1K4M5_PHYPA)

HSP 1 Score: 113 bits (283), Expect = 2.150e-27
Identity = 51/86 (59.30%), Postives = 65/86 (75.58%), Query Frame = 1
Query:    1 RNPFDPKERMVKRLIAVGGDWVRPLGSRHDVLRVPQGCCWVEGDNPRVSGDSNQFGPIPLALIEAKVTHVLWPPRRIGPLDQDLPE 258
            R+P +PK  +VKRLIA+ GDWV   G+ +D+L+VP+G CWVEGDN  +S DS  FGPIPL L++ KVTHV+WPP R GP+   LPE
Sbjct:   82 RSPLEPKMWLVKRLIALQGDWVTVPGT-YDILQVPKGHCWVEGDNAEISLDSKSFGPIPLGLMKGKVTHVVWPPSRFGPVASHLPE 166          
BLAST of mRNA_A-nodosum_M_contig1279.8.1 vs. uniprot
Match: A0A388KQ27_CHABU (Mitochondrial inner membrane protease subunit 2 n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388KQ27_CHABU)

HSP 1 Score: 111 bits (277), Expect = 2.240e-27
Identity = 49/85 (57.65%), Postives = 65/85 (76.47%), Query Frame = 1
Query:    4 NPFDPKERMVKRLIAVGGDWVRPLGSRHDVLRVPQGCCWVEGDNPRVSGDSNQFGPIPLALIEAKVTHVLWPPRRIGPLDQDLPE 258
            +P +PK  +VKRLIA+ GDWV   G+ +D+ +VP+G CWVEGDNP VS DS  FGP+PLAL+E +VTHV+WPP R G ++  +PE
Sbjct:   17 SPEEPKVCLVKRLIALQGDWVSVPGT-YDITQVPKGHCWVEGDNPMVSSDSKAFGPVPLALLEGRVTHVIWPPTRAGRVESRVPE 100          
BLAST of mRNA_A-nodosum_M_contig1279.8.1 vs. uniprot
Match: A0A2G5CLM4_AQUCA (Mitochondrial inner membrane protease subunit 2 n=1 Tax=Aquilegia coerulea TaxID=218851 RepID=A0A2G5CLM4_AQUCA)

HSP 1 Score: 113 bits (282), Expect = 2.240e-27
Identity = 53/98 (54.08%), Postives = 70/98 (71.43%), Query Frame = 1
Query:    1 RNPFDPKERMVKRLIAVGGDWVRPLGSRHDVLRVPQGCCWVEGDNPRVSGDSNQFGPIPLALIEAKVTHVLWPPRRIGPLDQDLPEAHRGFRGR*IQY 294
            R+P D KE+ +KR+IA+ GDW+    S  + L++P+G CWVEGDNP  S DS  FGPIPLALIE KVTH++WPP+R+G +++ LPE      GR I Y
Sbjct:   79 RSPNDYKEKQIKRIIALEGDWINVPNS-FETLKIPRGHCWVEGDNPTNSVDSRSFGPIPLALIEGKVTHIIWPPQRVGKVEKILPE------GRLISY 169          
BLAST of mRNA_A-nodosum_M_contig1279.8.1 vs. uniprot
Match: A0A176VCD5_MARPO (Mitochondrial inner membrane protease subunit 2 n=2 Tax=Marchantia polymorpha TaxID=3197 RepID=A0A176VCD5_MARPO)

HSP 1 Score: 110 bits (276), Expect = 2.030e-26
Identity = 50/94 (53.19%), Postives = 71/94 (75.53%), Query Frame = 1
Query:    1 RNPFDPKERMVKRLIAVGGDWVRPLGSRHDVLRVPQGCCWVEGDNPRVSGDSNQFGPIPLALIEAKVTHVLWPPRRIGPLDQDLPEAHRGFRGR 282
            R+P DPKE +VKRLIA+  DW+   G+ +++L++P+G CWVEGDN  VS DS +FGPIP+AL+  +VTHV+WPP+R+GP++   P   R F G+
Sbjct:   81 RSPQDPKEYLVKRLIALQEDWITVPGT-YEILQIPKGHCWVEGDNVDVSLDSKEFGPIPIALMRGRVTHVVWPPQRLGPVESKYPTG-RVFSGK 172          
BLAST of mRNA_A-nodosum_M_contig1279.8.1 vs. uniprot
Match: A0A2P5BQT5_PARAD (Mitochondrial inner membrane protease subunit 2 n=2 Tax=Cannabaceae TaxID=3481 RepID=A0A2P5BQT5_PARAD)

HSP 1 Score: 110 bits (275), Expect = 2.240e-26
Identity = 49/87 (56.32%), Postives = 66/87 (75.86%), Query Frame = 1
Query:    4 NPFDPKERMVKRLIAVGGDWVRPLGSRH--DVLRVPQGCCWVEGDNPRVSGDSNQFGPIPLALIEAKVTHVLWPPRRIGPLDQDLPE 258
            +P + KER +KR+I + GDWV   G RH  DV RVPQG CWVEGDNP  S DSN FGP+PL L++ +VTH++WPP+R+G +++ +PE
Sbjct:   77 SPQNHKERHIKRIIGLPGDWV---GIRHSSDVFRVPQGHCWVEGDNPASSMDSNTFGPVPLGLVQGRVTHIVWPPQRLGAVEKRVPE 160          
BLAST of mRNA_A-nodosum_M_contig1279.8.1 vs. uniprot
Match: A0A6P4APA3_ZIZJJ (Mitochondrial inner membrane protease subunit 2 n=3 Tax=Ziziphus jujuba TaxID=326968 RepID=A0A6P4APA3_ZIZJJ)

HSP 1 Score: 109 bits (272), Expect = 6.920e-26
Identity = 48/86 (55.81%), Postives = 66/86 (76.74%), Query Frame = 1
Query:    4 NPFDPKERMVKRLIAVGGDWVRPLGSRH--DVLRVPQGCCWVEGDNPRVSGDSNQFGPIPLALIEAKVTHVLWPPRRIGPLDQDLP 255
            +P + KE+ +KR+IA+ GDW+   G RH  DVLR+P G CWVEGDNP  S DSN FGPIPL L++ +VTH++WPP+RIG +++ +P
Sbjct:   81 SPSNHKEKHIKRVIALPGDWI---GIRHTSDVLRIPDGHCWVEGDNPSSSMDSNSFGPIPLGLVKGRVTHIVWPPQRIGAVEKRIP 163          
BLAST of mRNA_A-nodosum_M_contig1279.8.1 vs. uniprot
Match: W9SRW4_9ROSA (Mitochondrial inner membrane protease subunit 2 n=1 Tax=Morus notabilis TaxID=981085 RepID=W9SRW4_9ROSA)

HSP 1 Score: 108 bits (269), Expect = 1.720e-25
Identity = 47/82 (57.32%), Postives = 63/82 (76.83%), Query Frame = 1
Query:   19 KERMVKRLIAVGGDWVRPLGSRH--DVLRVPQGCCWVEGDNPRVSGDSNQFGPIPLALIEAKVTHVLWPPRRIGPLDQDLPE 258
            KER +KR+I + GDW+   G RH  DVLR+P+G CWVEGDNP  S DSN FGP+PL L+  +VTH++WPP+RIG +++ +PE
Sbjct:   82 KERHIKRIIGLPGDWI---GIRHCSDVLRIPEGHCWVEGDNPASSMDSNTFGPVPLGLVAGRVTHIVWPPQRIGAVERKVPE 160          
BLAST of mRNA_A-nodosum_M_contig1279.8.1 vs. uniprot
Match: A0A2P2J7I6_RHIMU (Mitochondrial inner membrane protease subunit 2 n=1 Tax=Rhizophora mucronata TaxID=61149 RepID=A0A2P2J7I6_RHIMU)

HSP 1 Score: 106 bits (264), Expect = 1.850e-25
Identity = 45/81 (55.56%), Postives = 61/81 (75.31%), Query Frame = 1
Query:    4 NPFDPKERMVKRLIAVGGDWVRPLGSRHDVLRVPQGCCWVEGDNPRVSGDSNQFGPIPLALIEAKVTHVLWPPRRIGPLDQ 246
            +P + KE+ VKR+I + GDW+    S HDV+++PQG CWVEGD+P  S DS  FGPIPL LI  +VTH++WPPRR+G +D+
Sbjct:   18 SPINHKEKYVKRIIGLPGDWIGTPYS-HDVVKIPQGHCWVEGDDPSFSMDSRSFGPIPLGLINGRVTHIVWPPRRVGKVDR 97          
BLAST of mRNA_A-nodosum_M_contig1279.8.1 vs. uniprot
Match: A0A8K0HBZ9_9ROSA (Uncharacterized protein n=2 Tax=Rhamnella rubrinervis TaxID=2594499 RepID=A0A8K0HBZ9_9ROSA)

HSP 1 Score: 107 bits (268), Expect = 2.420e-25
Identity = 47/85 (55.29%), Postives = 65/85 (76.47%), Query Frame = 1
Query:    7 PFDPKERMVKRLIAVGGDWVRPLGSRH--DVLRVPQGCCWVEGDNPRVSGDSNQFGPIPLALIEAKVTHVLWPPRRIGPLDQDLP 255
            P + KE+ +KR+IA+ GDW+   G RH  DV R+P+G CWVEGDNP  S DSN FGPIPL L++ +VTH++WPP+RIG +++ +P
Sbjct:   78 PSNHKEKHIKRIIALPGDWI---GIRHCSDVRRIPEGHCWVEGDNPSSSMDSNSFGPIPLGLVKGRVTHIVWPPQRIGAVEKRIP 159          
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1279.8.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FXB9_ECTSI3.560e-4477.78Mitochondrial inner membrane protease subunit 2 n=... [more]
A0A2K1K4M5_PHYPA2.150e-2759.30Mitochondrial inner membrane protease subunit 2 n=... [more]
A0A388KQ27_CHABU2.240e-2757.65Mitochondrial inner membrane protease subunit 2 n=... [more]
A0A2G5CLM4_AQUCA2.240e-2754.08Mitochondrial inner membrane protease subunit 2 n=... [more]
A0A176VCD5_MARPO2.030e-2653.19Mitochondrial inner membrane protease subunit 2 n=... [more]
A0A2P5BQT5_PARAD2.240e-2656.32Mitochondrial inner membrane protease subunit 2 n=... [more]
A0A6P4APA3_ZIZJJ6.920e-2655.81Mitochondrial inner membrane protease subunit 2 n=... [more]
W9SRW4_9ROSA1.720e-2557.32Mitochondrial inner membrane protease subunit 2 n=... [more]
A0A2P2J7I6_RHIMU1.850e-2555.56Mitochondrial inner membrane protease subunit 2 n=... [more]
A0A8K0HBZ9_9ROSA2.420e-2555.29Uncharacterized protein n=2 Tax=Rhamnella rubriner... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig1279contigA-nodosum_M_contig1279:64884..66296 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FXB9
PFAMsPeptidase_S24,Peptidase_S26
Model size812
Max annot lvl2759|Eukaryota
KEGG koko:K09648
KEGG Pathwayko03060,map03060
Hectar predicted targeting categoryother localisation
Exons2
Evalue3.04e-40
EggNOG OGsCOG0681@1|root,KOG1568@2759|Eukaryota
Ec32 ortholog descriptionImp2 homolog, Inner Membrane Peptidase complex subunit 2
Ec32 orthologEc-04_000030.1
Descriptionprotein processing involved in protein targeting to mitochondrion
Cds size258
COG categoryU
BRITEko00000,ko00001,ko01000,ko01002,ko03029
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866716.3687806-UTR-A-nodosum_M_contig1279:64883..649101680866716.3687806-UTR-A-nodosum_M_contig1279:64883..64910Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig1279 64884..64910 +
1680866716.3961382-UTR-A-nodosum_M_contig1279:65769..662961680866716.3961382-UTR-A-nodosum_M_contig1279:65769..66296Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig1279 65770..66296 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866716.3783407-CDS-A-nodosum_M_contig1279:64910..650541680866716.3783407-CDS-A-nodosum_M_contig1279:64910..65054Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1279 64911..65054 +
1680866716.3883185-CDS-A-nodosum_M_contig1279:65655..657691680866716.3883185-CDS-A-nodosum_M_contig1279:65655..65769Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1279 65656..65769 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig1279.8.1prot_A-nodosum_M_contig1279.8.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig1279 64911..65769 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig1279.8.1

>prot_A-nodosum_M_contig1279.8.1 ID=prot_A-nodosum_M_contig1279.8.1|Name=mRNA_A-nodosum_M_contig1279.8.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=86bp
MVKRLIAVGGDWVRPLGSRHDVLRVPQGCCWVEGDNPRVSGDSNQFGPIP
LALIEAKVTHVLWPPRRIGPLDQDLPEAHRGFRGR*
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mRNA from alignment at A-nodosum_M_contig1279:64884..66296+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig1279.8.1 ID=mRNA_A-nodosum_M_contig1279.8.1|Name=mRNA_A-nodosum_M_contig1279.8.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=1413bp|location=Sequence derived from alignment at A-nodosum_M_contig1279:64884..66296+ (Ascophyllum nodosum dioecious)
AGAAATCCATTTGACCCGAAAGAGCGAATGGTGAAGCGGCTTATCGCGGT CGGCGGAGACTGGGTTCGACCCCTCGGGAGTAGGCATGATGTCCTGCGAG TGCCTCAGGGGTGTTGCTGGGTGGAAGGAGACAATCCCAGGGTCAGCGGC GACAGCAATCAGTTCGGACCGGTACGTTTTTTCTTGGGTTGGACGGCTGC TACTGTTGTTACACTGATTTGTGTCCCTGAAAACTACGTTACGCGAGCGA TGGTCGACTATGAAACGCTTGTCGGCAGCGTATGGCTCCCCTTACTTATA CTGTAGTGAAGTATGATAGTCTAGTACAGCATGTCGTATTGGAATCTCGT GAAACTGGTACCTGGTATTGATTATCGTGACATGGTACTGTACCTACCTC GTACTTCGTACTTGGCAAAAAATACACCGTGATTTCGTCCGCTGGAGGTG TGATTGCATCGCTAACCAATGCAGCGTTCGCTTCACTTCACCGCATGCGG ACGTGGAGAAGAATAGGCCATCTATACCCGCTGCACCGGAATGATTCGCT CCGCACACGCAACAAACACATCAAAGAACGTTCGGTCATTTTTTTTACCT CGTTCCGTGTAAGCTGCTGTCTCTCTCTCCTTTATGTTATCTCCCTTTCT CTCTCTTTCTCTCTATCTCTCTCTCTCTCTCTTTCTCTCTTTTATGTTAT CTTTATATATTTATATATATATATTTATATATATATATATCGTTGTCATG TTTCACGATGGTGCCTTCGCAGATACCCCTCGCACTCATCGAGGCGAAGG TGACTCACGTCCTGTGGCCGCCAAGACGAATAGGGCCTCTCGATCAAGAC CTCCCCGAGGCACACCGGGGTTTCCGTGGCCGATAGATTCAGTACTGTAC TCAAGTGTTACTTCGGGTTGCCCACTCTGTTTTCGCCGAGGAGCTCTGCG TAACGTTCACTTACTCGCTGGAAAGGAAGAACAGTCTTCGCCTTGCCCGA CCCGTATTTGGTACCGGTAGTATTAATAGTATTAATAGTAGCAGGGTGGT AAAATGAAAACTACTCATGCACCCTGCCTGGTACACGAGTAAGGCTAGGT ACTGTCGGTGCAGGATGCAGGACACACCGCGAACCTTGGCCAAGCGTAAG TCGGTTGCCGTGTTGGTTTTTGTCGTGTTTTTTTAAGTCTGGTGTTTTCG GTCGCTCCTTTTTCCTTTCCTGGCGTAGTTGGAGACATGATTGAACCAAC GAAGGGGGTTGGTTGAACGCGACGGTTGAAACTATAAATATATAACTAAT AATATAACACCTTGTACGCCTTCCGCTGCGTGGACGTCTAAGACACTGCA CAATGACTTTCCTCTACCTTATTATTACTTCAATACGGTATTTATTATTA CCTCAGCACGAGC
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Coding sequence (CDS) from alignment at A-nodosum_M_contig1279:64884..66296+

>mRNA_A-nodosum_M_contig1279.8.1 ID=mRNA_A-nodosum_M_contig1279.8.1|Name=mRNA_A-nodosum_M_contig1279.8.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=258bp|location=Sequence derived from alignment at A-nodosum_M_contig1279:64884..66296+ (Ascophyllum nodosum dioecious)
ATGGTGAAGCGGCTTATCGCGGTCGGCGGAGACTGGGTTCGACCCCTCGG
GAGTAGGCATGATGTCCTGCGAGTGCCTCAGGGGTGTTGCTGGGTGGAAG
GAGACAATCCCAGGGTCAGCGGCGACAGCAATCAGTTCGGACCGATACCC
CTCGCACTCATCGAGGCGAAGGTGACTCACGTCCTGTGGCCGCCAAGACG
AATAGGGCCTCTCGATCAAGACCTCCCCGAGGCACACCGGGGTTTCCGTG
GCCGATAG
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