mRNA_A-nodosum_M_contig1279.32.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig1279.32.1
Unique NamemRNA_A-nodosum_M_contig1279.32.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
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BLAST of mRNA_A-nodosum_M_contig1279.32.1 vs. uniprot
Match: D8LEW9_ECTSI (USP domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEW9_ECTSI)

HSP 1 Score: 86.7 bits (213), Expect = 5.450e-18
Identity = 40/62 (64.52%), Postives = 47/62 (75.81%), Query Frame = 1 
Query:   52 SGPLPRGLANASGQNHCFLNVVVQCLWHLDAFREKVDGSSNSNSSTA-----VGAWGKKPRV 222
            S P+PRGL NA+GQN+CFLNVVVQ LWHL+AFR +  GS +SNS T       GAWGKKP+V
Sbjct: 1528 SAPMPRGLVNATGQNNCFLNVVVQSLWHLEAFRAQFGGSGDSNSGTTNAAAVSGAWGKKPQV 1589
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BLAST of mRNA_A-nodosum_M_contig1279.32.1 vs. uniprot
Match: A0A6H5KBH4_9PHAE (USP domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBH4_9PHAE)

HSP 1 Score: 86.7 bits (213), Expect = 5.470e-18
Identity = 40/62 (64.52%), Postives = 46/62 (74.19%), Query Frame = 1 
Query:   52 SGPLPRGLANASGQNHCFLNVVVQCLWHLDAFREKVDGSSNSNSSTAV-----GAWGKKPRV 222
            S P+PRGL NA+GQN+CFLNVVVQ LWHL+AFR +  GS  SNS T       GAWGKKP+V
Sbjct: 2060 SAPMPRGLVNATGQNNCFLNVVVQSLWHLEAFRAQFGGSGGSNSCTTTASAVSGAWGKKPQV 2121
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BLAST of mRNA_A-nodosum_M_contig1279.32.1 vs. uniprot
Match: A0A7S3UU50_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UU50_HETAK)

HSP 1 Score: 60.5 bits (145), Expect = 7.850e-9
Identity = 25/30 (83.33%), Postives = 27/30 (90.00%), Query Frame = 1 
Query:   64 PRGLANASGQNHCFLNVVVQCLWHLDAFRE 153
            PRGL N +GQN+CFLNVVVQ LWHLDAFRE
Sbjct:  270 PRGLTNETGQNNCFLNVVVQSLWHLDAFRE 299
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BLAST of mRNA_A-nodosum_M_contig1279.32.1 vs. uniprot
Match: A0A7S3C552_9VIRI (Hypothetical protein (Fragment) n=1 Tax=Prasinoderma singulare TaxID=676789 RepID=A0A7S3C552_9VIRI)

HSP 1 Score: 57.4 bits (137), Expect = 3.410e-8
Identity = 28/56 (50.00%), Postives = 40/56 (71.43%), Query Frame = 1 
Query:   43 PSPSGPLPRGLANASGQNHCFLNVVVQCLWHLDAFREK---VDGSSNSNSSTAVGA 201
            PSP+     GLANA+G+ +CFLNVVVQ LWHL  FR++   +D +S++++  A GA
Sbjct:   16 PSPAVRGTTGLANATGEYNCFLNVVVQSLWHLPPFRQQLLAIDAASDASALAASGA 71
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BLAST of mRNA_A-nodosum_M_contig1279.32.1 vs. uniprot
Match: A0A7S3FJS1_9VIRI (Hypothetical protein n=1 Tax=Prasinoderma singulare TaxID=676789 RepID=A0A7S3FJS1_9VIRI)

HSP 1 Score: 57.4 bits (137), Expect = 9.880e-8
Identity = 28/56 (50.00%), Postives = 40/56 (71.43%), Query Frame = 1 
Query:   43 PSPSGPLPRGLANASGQNHCFLNVVVQCLWHLDAFREK---VDGSSNSNSSTAVGA 201
            PSP+     GLANA+G+ +CFLNVVVQ LWHL  FR++   +D +S++++  A GA
Sbjct:   16 PSPAVRGTTGLANATGEYNCFLNVVVQSLWHLPPFRQQLLAIDAASDASALAASGA 71
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BLAST of mRNA_A-nodosum_M_contig1279.32.1 vs. uniprot
Match: L8GH96_ACACA (Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8GH96_ACACA)

HSP 1 Score: 55.8 bits (133), Expect = 3.670e-7
Identity = 24/46 (52.17%), Postives = 34/46 (73.91%), Query Frame = 1 
Query:   43 PSPSGPLPRGLANASGQNHCFLNVVVQCLWHLDAFREKVDGSSNSN 180
            PSP+  L +GL N  G+N+CFLNVV+Q LWHLD+FR + +G+   +
Sbjct:   16 PSPNTNL-KGLINPLGENNCFLNVVIQSLWHLDSFRTRFEGTEEKH 60
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BLAST of mRNA_A-nodosum_M_contig1279.32.1 vs. uniprot
Match: A0A1V9YI54_9STRA (Inactive ubiquitin carboxyl-terminal hydrolase n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YI54_9STRA)

HSP 1 Score: 55.5 bits (132), Expect = 4.940e-7
Identity = 21/40 (52.50%), Postives = 31/40 (77.50%), Query Frame = 1 
Query:   61 LPRGLANASGQNHCFLNVVVQCLWHLDAFREKVDGSSNSN 180
            L +GL N SGQN+CFLNV++Q LWHLD+FR  +  + +++
Sbjct:   12 LHKGLTNYSGQNNCFLNVIIQSLWHLDSFRVLISSADHAS 51
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BLAST of mRNA_A-nodosum_M_contig1279.32.1 vs. uniprot
Match: A0A0D2WLI7_CAPO3 (Uncharacterized protein n=1 Tax=Capsaspora owczarzaki (strain ATCC 30864) TaxID=595528 RepID=A0A0D2WLI7_CAPO3)

HSP 1 Score: 55.1 bits (131), Expect = 6.900e-7
Identity = 25/50 (50.00%), Postives = 31/50 (62.00%), Query Frame = 1 
Query:    4 TGVEVASTTKNGFPSPSGPLPRGLANASGQNHCFLNVVVQCLWHLDAFRE 153
            +G+   S + N   S S    RGL NA+G NHCF+N VVQ LWHL  FR+
Sbjct:   49 SGLSSLSHSVNDLTSTSADWSRGLTNATGDNHCFMNGVVQLLWHLAPFRD 98
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BLAST of mRNA_A-nodosum_M_contig1279.32.1 vs. uniprot
Match: A0A067D4R8_SAPPC (Uncharacterized protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067D4R8_SAPPC)

HSP 1 Score: 53.9 bits (128), Expect = 1.730e-6
Identity = 21/38 (55.26%), Postives = 29/38 (76.32%), Query Frame = 1 
Query:   61 LPRGLANASGQNHCFLNVVVQCLWHLDAFREKVDGSSN 174
            L +GL N +GQN+CFLNV++Q LWHLD+FR  +  S +
Sbjct:   12 LHKGLTNYAGQNNCFLNVIIQSLWHLDSFRVLISTSDH 49
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BLAST of mRNA_A-nodosum_M_contig1279.32.1 vs. uniprot
Match: A0A485LNY2_9STRA (Aste57867_23514 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LNY2_9STRA)

HSP 1 Score: 53.5 bits (127), Expect = 2.360e-6
Identity = 21/41 (51.22%), Postives = 29/41 (70.73%), Query Frame = 1 
Query:   67 RGLANASGQNHCFLNVVVQCLWHLDAFREKVDGSSNSNSST 189
            +GL N  GQN+CFLNV++Q LWHLD+FR  +  S ++   T
Sbjct:   18 KGLTNHIGQNNCFLNVIIQSLWHLDSFRVLIKSSDHTTFHT 58
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1279.32.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LEW9_ECTSI5.450e-1864.52USP domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5KBH4_9PHAE5.470e-1864.52USP domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A7S3UU50_HETAK7.850e-983.33Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S3C552_9VIRI3.410e-850.00Hypothetical protein (Fragment) n=1 Tax=Prasinoder... [more]
A0A7S3FJS1_9VIRI9.880e-850.00Hypothetical protein n=1 Tax=Prasinoderma singular... [more]
L8GH96_ACACA3.670e-752.17Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Acan... [more]
A0A1V9YI54_9STRA4.940e-752.50Inactive ubiquitin carboxyl-terminal hydrolase n=1... [more]
A0A0D2WLI7_CAPO36.900e-750.00Uncharacterized protein n=1 Tax=Capsaspora owczarz... [more]
A0A067D4R8_SAPPC1.730e-655.26Uncharacterized protein n=2 Tax=Saprolegnia TaxID=... [more]
A0A485LNY2_9STRA2.360e-651.22Aste57867_23514 protein n=1 Tax=Aphanomyces stella... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig1279contigA-nodosum_M_contig1279:212697..212945 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LEW9
PFAMsUCH
Model size249
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons1
Evalue8.94e-19
EggNOG OGsKOG1887@1|root,KOG1887@2759|Eukaryota
Descriptionprotein deubiquitination
Cds size249
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866719.3102832-CDS-A-nodosum_M_contig1279:212696..2129451680866719.3102832-CDS-A-nodosum_M_contig1279:212696..212945Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1279 212697..212945 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig1279.32.1prot_A-nodosum_M_contig1279.32.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig1279 212697..212945 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig1279.32.1

>prot_A-nodosum_M_contig1279.32.1 ID=prot_A-nodosum_M_contig1279.32.1|Name=mRNA_A-nodosum_M_contig1279.32.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=83bp
MTGVEVASTTKNGFPSPSGPLPRGLANASGQNHCFLNVVVQCLWHLDAFR
EKVDGSSNSNSSTAVGAWGKKPRVRSKPCFSR*
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mRNA from alignment at A-nodosum_M_contig1279:212697..212945-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig1279.32.1 ID=mRNA_A-nodosum_M_contig1279.32.1|Name=mRNA_A-nodosum_M_contig1279.32.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=249bp|location=Sequence derived from alignment at A-nodosum_M_contig1279:212697..212945- (Ascophyllum nodosum dioecious)
ATGACAGGGGTAGAGGTGGCGTCAACAACGAAGAACGGTTTCCCCTCTCC
GTCGGGTCCATTGCCTCGTGGTCTTGCCAACGCGTCGGGCCAGAACCACT
GTTTTCTGAACGTCGTGGTGCAATGTCTGTGGCACTTAGATGCGTTCCGC
GAAAAGGTTGACGGCAGCAGCAACAGCAACAGCAGCACGGCGGTGGGGGC
ATGGGGCAAGAAGCCACGGGTACGCTCCAAGCCTTGTTTTTCTCGATAG
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Coding sequence (CDS) from alignment at A-nodosum_M_contig1279:212697..212945-

>mRNA_A-nodosum_M_contig1279.32.1 ID=mRNA_A-nodosum_M_contig1279.32.1|Name=mRNA_A-nodosum_M_contig1279.32.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=249bp|location=Sequence derived from alignment at A-nodosum_M_contig1279:212697..212945- (Ascophyllum nodosum dioecious)
ATGACAGGGGTAGAGGTGGCGTCAACAACGAAGAACGGTTTCCCCTCTCC
GTCGGGTCCATTGCCTCGTGGTCTTGCCAACGCGTCGGGCCAGAACCACT
GTTTTCTGAACGTCGTGGTGCAATGTCTGTGGCACTTAGATGCGTTCCGC
GAAAAGGTTGACGGCAGCAGCAACAGCAACAGCAGCACGGCGGTGGGGGC
ATGGGGCAAGAAGCCACGGGTACGCTCCAAGCCTTGTTTTTCTCGATAG
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