mRNA_A-nodosum_M_contig1279.1.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig1279.1.1
Unique NamemRNA_A-nodosum_M_contig1279.1.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
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BLAST of mRNA_A-nodosum_M_contig1279.1.1 vs. uniprot
Match: A0A2P8Y1V2_BLAGE (Uncharacterized protein n=1 Tax=Blattella germanica TaxID=6973 RepID=A0A2P8Y1V2_BLAGE)

HSP 1 Score: 46.6 bits (109), Expect = 5.970e-5
Identity = 26/66 (39.39%), Postives = 33/66 (50.00%), Query Frame = 1 
Query:   28 LIRMSGGRLLKRIVFGNPDGAVQRGRGGKEKEWTDCVQSDIRAFGIAGDWKATALKAEVWVETVAE 225
            +IRM GGR +KRI  GNP G    GR        DC++ D+R  G+   W+  A   E WV    E
Sbjct:    1 MIRMDGGRTVKRIFEGNPGGRRYGGR--PRLRCLDCLEEDLRRMGVRR-WRKKAENREEWVVIAKE 63
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1279.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A2P8Y1V2_BLAGE5.970e-539.39Uncharacterized protein n=1 Tax=Blattella germanic... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig1279contigA-nodosum_M_contig1279:21602..21853 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog7897.ENSLACP00000017164
Model size252
Max annot lvl33208|Metazoa
Hectar predicted targeting categorysignal peptide
Exons1
Evalue2.57e-05
EggNOG OGsKOG1075@1|root,KOG1075@2759|Eukaryota,3A35Z@33154|Opisthokonta,3BQYF@33208|Metazoa,3D7GC@33213|Bilateria,48EZY@7711|Chordata,49BMJ@7742|Vertebrata
DescriptionRibonuclease H protein
Cds size252
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866716.0341601-CDS-A-nodosum_M_contig1279:21601..218531680866716.0341601-CDS-A-nodosum_M_contig1279:21601..21853Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1279 21602..21853 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig1279.1.1prot_A-nodosum_M_contig1279.1.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig1279 21602..21853 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig1279.1.1

>prot_A-nodosum_M_contig1279.1.1 ID=prot_A-nodosum_M_contig1279.1.1|Name=mRNA_A-nodosum_M_contig1279.1.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=84bp
RIRLLWVGTLIRMSGGRLLKRIVFGNPDGAVQRGRGGKEKEWTDCVQSDI
RAFGIAGDWKATALKAEVWVETVAEGGWRFMVA*
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mRNA from alignment at A-nodosum_M_contig1279:21602..21853+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig1279.1.1 ID=mRNA_A-nodosum_M_contig1279.1.1|Name=mRNA_A-nodosum_M_contig1279.1.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=252bp|location=Sequence derived from alignment at A-nodosum_M_contig1279:21602..21853+ (Ascophyllum nodosum dioecious)
AGGATAAGACTTTTGTGGGTTGGGACGCTCATCCGAATGAGCGGCGGGCG
GCTGCTGAAGCGAATCGTGTTTGGAAACCCTGATGGTGCAGTACAGAGAG
GACGGGGTGGAAAGGAGAAAGAGTGGACTGATTGCGTACAGAGCGACATT
CGGGCATTTGGCATAGCGGGGGACTGGAAAGCGACGGCATTAAAGGCTGA
GGTGTGGGTTGAGACGGTCGCCGAGGGTGGGTGGAGATTCATGGTCGCGT
AG
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Coding sequence (CDS) from alignment at A-nodosum_M_contig1279:21602..21853+

>mRNA_A-nodosum_M_contig1279.1.1 ID=mRNA_A-nodosum_M_contig1279.1.1|Name=mRNA_A-nodosum_M_contig1279.1.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=252bp|location=Sequence derived from alignment at A-nodosum_M_contig1279:21602..21853+ (Ascophyllum nodosum dioecious)
AGGATAAGACTTTTGTGGGTTGGGACGCTCATCCGAATGAGCGGCGGGCG
GCTGCTGAAGCGAATCGTGTTTGGAAACCCTGATGGTGCAGTACAGAGAG
GACGGGGTGGAAAGGAGAAAGAGTGGACTGATTGCGTACAGAGCGACATT
CGGGCATTTGGCATAGCGGGGGACTGGAAAGCGACGGCATTAAAGGCTGA
GGTGTGGGTTGAGACGGTCGCCGAGGGTGGGTGGAGATTCATGGTCGCGT
AG
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