mRNA_A-nodosum_M_contig12693.1.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig12693.1.1
Unique NamemRNA_A-nodosum_M_contig12693.1.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
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BLAST of mRNA_A-nodosum_M_contig12693.1.1 vs. uniprot
Match: D7FJX3_ECTSI (USP domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJX3_ECTSI)

HSP 1 Score: 91.7 bits (226), Expect = 4.040e-20
Identity = 46/57 (80.70%), Postives = 49/57 (85.96%), Query Frame = 2 
Query:    2 VLQALLACEPFVSVLLRAAPGLRHSVHAQETLPTWVQLARFAAAFEPPKPGSSALLV 172
            VLQALLACEPFV VL RAAPGLR SV A+E LPTW QLARFAAAFEPPKPG++A L 
Sbjct:  298 VLQALLACEPFVQVLFRAAPGLRDSVPAREALPTWAQLARFAAAFEPPKPGAAAPLA 354
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BLAST of mRNA_A-nodosum_M_contig12693.1.1 vs. uniprot
Match: A0A6H5JV52_9PHAE (USP domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV52_9PHAE)

HSP 1 Score: 90.5 bits (223), Expect = 1.030e-19
Identity = 45/56 (80.36%), Postives = 48/56 (85.71%), Query Frame = 2 
Query:    2 VLQALLACEPFVSVLLRAAPGLRHSVHAQETLPTWVQLARFAAAFEPPKPGSSALL 169
            VLQALLACEPFV VL RAAPGLR S+ A+E LPTW QLARFAAAFEPPKPG +A L
Sbjct:  265 VLQALLACEPFVQVLFRAAPGLRDSIPAKEALPTWAQLARFAAAFEPPKPGDAAPL 320
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig12693.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FJX3_ECTSI4.040e-2080.70USP domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5JV52_9PHAE1.030e-1980.36USP domain-containing protein n=1 Tax=Ectocarpus s... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig12693contigA-nodosum_M_contig12693:2924..3515 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size192
Hectar predicted targeting categoryother localisation
Exons2
Cds size192
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866707.0879674-CDS-A-nodosum_M_contig12693:2923..30761680866707.0879674-CDS-A-nodosum_M_contig12693:2923..3076Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig12693 2924..3076 -
1680866707.0992913-CDS-A-nodosum_M_contig12693:3476..35151680866707.0992913-CDS-A-nodosum_M_contig12693:3476..3515Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig12693 3477..3515 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig12693.1.1prot_A-nodosum_M_contig12693.1.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig12693 2924..3515 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig12693.1.1

>prot_A-nodosum_M_contig12693.1.1 ID=prot_A-nodosum_M_contig12693.1.1|Name=mRNA_A-nodosum_M_contig12693.1.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=64bp
GAAGSAGVRAVRERPASSRSWAAAFRSRSGDVADVGSARTFRSGFRAAQA
RQLGAIGGQYKEGE
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mRNA from alignment at A-nodosum_M_contig12693:2924..3515-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig12693.1.1 ID=mRNA_A-nodosum_M_contig12693.1.1|Name=mRNA_A-nodosum_M_contig12693.1.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=592bp|location=Sequence derived from alignment at A-nodosum_M_contig12693:2924..3515- (Ascophyllum nodosum dioecious)
GGTGCTGCAGGCTCTGCTGGCGTGCGAGCCGTTCGTGAGGCGAGAATTTC
CCTGTTTTTTTATTTTTTATTTTGTTTGTATGTGTTCCATATCCCTCTGC
TTTTTTACCCTCACGTATGATTCATCTTTAACAAACAGCAGACGGAGGGC
ATCATAGTGGTTACGGAACTTTGACCATGACCTTCCGATTTTCTCGACCC
CAGTTGCGGTGGCGTTTTTTCCAGGGGTTGGGGATCAAGGGAATAGCAGG
CTCTATTTTCGCGCGGTGTTTTTGACGATTGCCATCTCTGTGAGCGACTT
TATACATAAGGGTGCTTCTTTGTTTCATCTACTTGAGTTAAAAGTCCCTC
ACGTCCCTCTCCAAACATGCCACGGACGAAACCCCAGTTCTGCCCCCCCC
CCTTTCTGCTTTCCCACTCACGGCGCCGACCGTTTACAGCGTCCTGCTTC
GAGCCGCTCCTGGGCTGCGGCATTCCGTTCACGCTCAGGAGACGTTGCCG
ACGTGGGTTCAGCTCGCACGTTTCGCAGCGGCTTTCGAGCCGCCCAAGCC
CGGCAGCTCGGCGCTATTGGTGGGCAGTACAAAGAAGGGGAG
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Coding sequence (CDS) from alignment at A-nodosum_M_contig12693:2924..3515-

>mRNA_A-nodosum_M_contig12693.1.1 ID=mRNA_A-nodosum_M_contig12693.1.1|Name=mRNA_A-nodosum_M_contig12693.1.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=192bp|location=Sequence derived from alignment at A-nodosum_M_contig12693:2924..3515- (Ascophyllum nodosum dioecious)
GGTGCTGCAGGCTCTGCTGGCGTGCGAGCCGTTCGTGAGCGTCCTGCTTC
GAGCCGCTCCTGGGCTGCGGCATTCCGTTCACGCTCAGGAGACGTTGCCG
ACGTGGGTTCAGCTCGCACGTTTCGCAGCGGCTTTCGAGCCGCCCAAGCC
CGGCAGCTCGGCGCTATTGGTGGGCAGTACAAAGAAGGGGAG
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