mRNA_A-nodosum_M_contig1268.1.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig1268.1.1
Unique NamemRNA_A-nodosum_M_contig1268.1.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
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BLAST of mRNA_A-nodosum_M_contig1268.1.1 vs. uniprot
Match: D7FYX2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FYX2_ECTSI)

HSP 1 Score: 86.7 bits (213), Expect = 6.820e-16
Identity = 121/222 (54.50%), Postives = 132/222 (59.46%), Query Frame = 3 
Query:   81 MADDNEVDKYKRLYEEQRAKVKDLERQNSQLKDVIQQLMEAARQAPA------------------------NRNPAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQRPGAAGGGQAIATGTRSGEGSVQESRDPSAATGEALVAXXXXXXXXXNKQESTQPPEPDVRNDIVSQMREASMSKDRAKLEAAIKKAEDAGLHFEANQGRRQLSRISG 674
            MA + E+DKYKRLYEEQ+AKVKDLERQN QLKD +Q LME  RQ  +                        +RN A   AXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX                                       XXXXXXXXX         EPDVR++IV+ MREASMSKD+ KLE AIKKAEDAGLHFEA+QGRRQL RI G
Sbjct:    1 MAAEEELDKYKRLYEEQKAKVKDLERQNLQLKDTVQHLMEVGRQQGSAAGXXXXXXXXXXXXXXXXXXXXXSRNTAR--AXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEPDVRSEIVAMMREASMSKDKDKLEGAIKKAEDAGLHFEASQGRRQLGRIVG 220
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1268.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FYX2_ECTSI6.820e-1654.50Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig1268contigA-nodosum_M_contig1268:37745..41964 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1313
Hectar predicted targeting categoryother localisation
Exons3
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-19_002800.1
Cds size597
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866705.5472543-UTR-A-nodosum_M_contig1268:37744..378241680866705.5472543-UTR-A-nodosum_M_contig1268:37744..37824Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig1268 37745..37824 +
1680866705.5818546-UTR-A-nodosum_M_contig1268:41328..419641680866705.5818546-UTR-A-nodosum_M_contig1268:41328..41964Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig1268 41329..41964 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866705.556123-CDS-A-nodosum_M_contig1268:37824..379201680866705.556123-CDS-A-nodosum_M_contig1268:37824..37920Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1268 37825..37920 +
1680866705.56438-CDS-A-nodosum_M_contig1268:38361..386911680866705.56438-CDS-A-nodosum_M_contig1268:38361..38691Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1268 38362..38691 +
1680866705.5728488-CDS-A-nodosum_M_contig1268:41157..413281680866705.5728488-CDS-A-nodosum_M_contig1268:41157..41328Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1268 41158..41328 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig1268.1.1prot_A-nodosum_M_contig1268.1.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig1268 37825..41328 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig1268.1.1

>prot_A-nodosum_M_contig1268.1.1 ID=prot_A-nodosum_M_contig1268.1.1|Name=mRNA_A-nodosum_M_contig1268.1.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=199bp
MADDNEVDKYKRLYEEQRAKVKDLERQNSQLKDVIQQLMEAARQAPANRN
PAATGAGGRGRSRPGPSRTNNPSASVNSGGRGRGNASSNQRPGAAGGGQA
IATGTRSGEGSVQESRDPSAATGEALVAAAAAAAAARNKQESTQPPEPDV
RNDIVSQMREASMSKDRAKLEAAIKKAEDAGLHFEANQGRRQLSRISG*
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mRNA from alignment at A-nodosum_M_contig1268:37745..41964+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig1268.1.1 ID=mRNA_A-nodosum_M_contig1268.1.1|Name=mRNA_A-nodosum_M_contig1268.1.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=4220bp|location=Sequence derived from alignment at A-nodosum_M_contig1268:37745..41964+ (Ascophyllum nodosum dioecious)
AGCTGGTTCTCTTGGGCACTCCGTGTAAACTGTACGAAGGACTGCAGCAG
CAAAAATAGTGTTGTATAAACCGAGAAGCGATGGCGGATGATAATGAAGT
TGATAAGTATAAACGCCTCTACGAAGAGCAGAGGGCCAAAGTGAAGGACT
TGGAGCGACAAAATTCCCAACTGAAGGTATGTTACAACACCATTTAGTTG
CTTGTGGAGAGTATATTATATTCCCAGGCCTAGAGAGGTAATATCAAATC
CGCACCTTCCCACCATTCGGTTCACAGCCTTGGAACAGATAACCAAATGA
ATTGGTGTGTCCATGATCGACGTTTACTGTCGCAGTAGATCCTTGGCGGT
GTTAAGGAATTGGAATCCTTAAACGTATAGTAAAAGTCCCAAGCGTTTGA
GACTTTCGCTAGCATCTGATGATCTCCAGCTGTGCTTGCAGAAACCTGCG
TCCAGACCATCGCTACAAATACATCAATTACAGATAAACCAGTATAATAC
CTATTGCCGTCTCTCAACTATCAAAATAGACTACAGGTGGACCTATATTT
ATGATTGCAGGGTCGCACTGCGACAATTTTGCTATTTTGCAATCCTTTTA
ATTTTCTTACCGAACAGGATGTTATCCAGCAGCTTATGGAAGCGGCGCGC
CAAGCACCTGCGAACAGGAACCCGGCAGCCACCGGTGCGGGCGGGCGCGG
TCGCTCGCGGCCGGGACCGTCGCGGACCAACAATCCCTCCGCGTCTGTTA
ACTCCGGTGGTCGAGGCAGAGGCAACGCTAGCTCAAACCAACGACCAGGT
GCAGCAGGGGGGGGGCAGGCGATCGCGACAGGTACTCGCAGCGGTGAAGG
GAGTGTGCAAGAATCTCGAGATCCTTCTGCTGCGACCGGGGAGGCTTTGG
TGGCGGCGGCGGCAGCGGCGGCGGCAGCTCGAAACAAGCAAGAGTCGGTG
AGAAGGAGAGACAGAGGGAAAATGGTGGCGGGATCATCGAGGATAGCTTT
GCACCGAGACTGGTGCATGACTTGATAAAATTGCATTCAGCGATCTTACG
ACACTGTTCAAGGTTTCGGCAAGTCAACAAGGCTGACTGTTCCCAGCAGC
AAGAGATACATTCATAGAAACTAGGACTGTAGTGGGTAGTTTGCACTGTT
TTCAATTGTGTCCAGGTAGCAATTTCAGCTTCACCGCATTCAGTACTGTA
TCAATATGGGCAACAGTCGCATTTCTTACCGGCAATTTAGCCAAAATTCT
TCTGTACAAAGTTGTTCCTGTCGATTCATCAGCCCTCCTTGTACCACACC
GTTGTACGATATCCCTTTCAGGGAAAATACCCCCTGTACACTAACTAAGT
ACGCTATAGGACACGTACACTCTACCAAGGTAGTAGTGAGTGTGGAAAAA
CAAGACTTGGTGCACGGGGTTACCTTAATAGGCAACACCCGCCACTCCAG
CTACCTTGAAAACAGCTGGGCCCCCGTGCCGGCGAACTCTCGGCGGTGAA
CGCCATCGGTACGGTGAACGCCATCGGTACGCAACTGCGTGACCTCATAA
ACTTGGGACTGACCCGATGGCCGTTGACGGTATAGATGGACACCATTGTG
GAAAGCGGGAGGAATGAGAGGAGCCCGTGAGTATGCGCCAGATTGATGAT
TGATGATTCAGCCTGGGTGTGGAGAATGAGTGGGCTGACGCGGGGAACGA
AACACCCAAACCTGTCCCGCGAGACCAAAGTCTGAGGCGCGAATGGAGAC
AGTTCAGCTGGTCATAAGCAATATTGCCAACGACACCCGGGTGATGCCTA
ATCTGGTGAACGTAATGGCCAGTAACAGTAACAACAATGAAAACGTAAAC
AGTACGAGTAACACCTGGAACTCTGTTTTGGGGGGGGGGCGGGGGGGGCG
ACTAAATATTCGTCAAATCCTGATGTTAGGTCGACTCCATAATTTATAGA
GCGGGGGGGGGAGAGCGCGTTGATCCCGTGAACCGAAGGTGCCCATTCCC
CGACCCCAGCATAGGTTTTGTGCTGCTTCTTGAAAGATACAATAACAACC
AGCATTACCATCTAATATGAGTGCCAGGATATAGTCCCCTTTCGATCAAA
CCCGCCGGTACTTTCAACATACCCACTTCATACCAACAGTGGGTGTGGGA
AAGAGAGGGTCCATGGTGACCTGCCAAGGCAGCACTCGTTCGGAACTACT
TTGAGGTTTACTGGCCCTGTGCCGGCGGACTCTCGGCAGTGAACGCCATC
GGTAAGCATTTGCGTGACCCGATAATCTCGGGACTGGCCCGATGGCGTAT
GGCGGTTTTATATAAATAAATGGACGCCGCCGCGGAACTTGGGAGGAATC
CCGTAAGTAAGCACCAGATTCAGCCTGAGTATGGAGAGATGAGCAAGCTG
ACGCGGGACGGGACGGCTGAACCCATCTCGCGAGACCAAATTCTCAGGCA
CGCACGAGGATAGGGGAATATTATTTTTCCCTGTTTAGCTGACCACGAGC
AGGATTGGCAACCTTATCCGGTTGATCCATACTCTGATGACCATACATAC
ATACCTTTGTCGCTAAAACTGACAAGTCCCTGGAATGACTGATCCGCTCG
CCCATAGCTCTCCGTACATCTAACCAGGGCACGATTTGGGACCTCGTAGG
CCAGCTGGGGTTTCACACGCGAACAATGTCTGGACGATGTCTGGGTTTGG
GTTCTCGTCGCGTTGGAATCGTGTGGAGTTCACAGGAGAGCGAAAAGGCG
ACGGAAAGAAAAAGCGCACACCGACACGAAATGAGCCGCGGGAGACAGAA
CCTTTAACCAACCCCCGTAAAATGCCATGTGTAGCACTATTATAAATAAT
AACATTACGTCTTCTACGACGCCATCCAAGACCTTCTGCGCGTTTCTCGG
TCATACCCAGTTTGGAAAGCTCTTCCAAACTTAGGTTTTAGCAAAACGCC
TCGAAATGACATACGCCTAGTACCACCGCCGAAGACGCAGGAGAGCTCTT
GTCACCACGGAAAATGATTAATCATCAATCATCAAGTCGTAGCGATCGAT
CTTTGGGTGCGAGAGTCGCAGGCGAGAGTCGCAGGCGAGAGTCGCAGGCG
AGAGTCGCAGGCGAGAGTCGCAGGCGAGAGTCGCAGGCGAGAGTCGCAGG
CGAGAGTCGCAAGTTTTCTTGGGTCGTCTCCAAACTACTATCGCGCAGCA
CCAAAACCGCGCTCACCTTGTGGCTGCAATCACACTATGCAAACAAGCGT
AATGTTCCTGAAATCCGCCGCCGTTTTCGCTCGGCTTGTTAAGTTATAAC
CGTACCCACCGCCCAATTTCCCACCCCCCTATCCACGCGGCCCCTGCCTG
CTTAACACACACAAATACGCATACCGTTGACTATCTACACTCGCCGCAAC
CGAGCGAACGCAGACTCAACCTCCGGAGCCGGATGTGCGGAACGACATCG
TCTCGCAAATGCGAGAGGCGAGCATGAGCAAGGACAGGGCGAAGCTGGAG
GCCGCAATCAAGAAGGCGGAGGATGCCGGTCTTCACTTTGAGGCAAACCA
GGGACGGCGGCAACTGAGTCGGATATCCGGATGATTTCGTTTACGAGCCG
ATGCCGCGCCGGCGGACCGCCCTCCGTTTGCGGGGGGAAAGCGAGGGGGA
AAGGGAGGGGGAGGCCGAGCCACGATGGGACTCAGATATGCAGACGCAAA
ACACGTCGGGGCTCTCTGGGGCCCGCTACGCTGTGAAGTGATCATGTAAG
GATTTCTCTGCCGCGGATATTTAGGTCTTTATGGGGATTTCAGCGGAAGA
CCTGGTAATCAAAAGTACGGACGGCATTGAAGAATGGGAAAAGAAGCAGA
CCGAGGCAACTTTGCTAATGTACCGTGCGTACCTACCTGTCATCGCCCAT
TTGGCAGCCCATCGTCATCAAGCATCATGCACGTTTTCTATGCTGTACCA
GGGACACCTCGCCCGCCCTCCTGCAGGCGTCTGACGTATTTTGTTTCGGA
TCGTGAATTGGAACCTCTCCTTTCGGGGCGGCGTACTGCGGTGACAACGC
GCCGCTGCCCTCTGCCGGCGCCGCCGTCGTCCACGGTGTGCGCCGCGTTT
TCCTAAGCTTTGCATATTAACTAAAGACGTGAGTGAAAACGTTTGTCGTA
CAGTTTTCATAGCTCGCGGTGTTATTTAGGGCATATTTTCTTGAGAGAAA
TCTGCGGGGAAAAGAGGCGA
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Coding sequence (CDS) from alignment at A-nodosum_M_contig1268:37745..41964+

>mRNA_A-nodosum_M_contig1268.1.1 ID=mRNA_A-nodosum_M_contig1268.1.1|Name=mRNA_A-nodosum_M_contig1268.1.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=597bp|location=Sequence derived from alignment at A-nodosum_M_contig1268:37745..41964+ (Ascophyllum nodosum dioecious)
ATGGCGGATGATAATGAAGTTGATAAGTATAAACGCCTCTACGAAGAGCA
GAGGGCCAAAGTGAAGGACTTGGAGCGACAAAATTCCCAACTGAAGGATG
TTATCCAGCAGCTTATGGAAGCGGCGCGCCAAGCACCTGCGAACAGGAAC
CCGGCAGCCACCGGTGCGGGCGGGCGCGGTCGCTCGCGGCCGGGACCGTC
GCGGACCAACAATCCCTCCGCGTCTGTTAACTCCGGTGGTCGAGGCAGAG
GCAACGCTAGCTCAAACCAACGACCAGGTGCAGCAGGGGGGGGGCAGGCG
ATCGCGACAGGTACTCGCAGCGGTGAAGGGAGTGTGCAAGAATCTCGAGA
TCCTTCTGCTGCGACCGGGGAGGCTTTGGTGGCGGCGGCGGCAGCGGCGG
CGGCAGCTCGAAACAAGCAAGAGTCGACTCAACCTCCGGAGCCGGATGTG
CGGAACGACATCGTCTCGCAAATGCGAGAGGCGAGCATGAGCAAGGACAG
GGCGAAGCTGGAGGCCGCAATCAAGAAGGCGGAGGATGCCGGTCTTCACT
TTGAGGCAAACCAGGGACGGCGGCAACTGAGTCGGATATCCGGATGA
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