mRNA_A-nodosum_M_contig1265.9.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig1265.9.1
Unique NamemRNA_A-nodosum_M_contig1265.9.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
[Close]
BLAST of mRNA_A-nodosum_M_contig1265.9.1 vs. uniprot
Match: A0A6H5JDC1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDC1_9PHAE)

HSP 1 Score: 66.6 bits (161), Expect = 5.050e-10
Identity = 36/73 (49.32%), Postives = 47/73 (64.38%), Query Frame = 1 
Query:  112 GETIAPLHQAAPRGDSKVGIAG----KIDEIRTDFADSDDNIPLPVELPAFEGLEEAMLVQELRKDRLPGSII 318
            G + A    AA +G+     A      ++E++ + ADSDD IPLP  +P F+ LEEAMLV+ELRKDRLPG II
Sbjct:  607 GSSSANCSAAAGQGEGDKSAASIDRQGVEEVKEEHADSDDEIPLPEGMPGFQTLEEAMLVRELRKDRLPGKII 679
[Close]
BLAST of mRNA_A-nodosum_M_contig1265.9.1 vs. uniprot
Match: D7FSX8_ECTSI (Ubiquitin carboxyl-terminal hydrolase 64E n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSX8_ECTSI)

HSP 1 Score: 63.5 bits (153), Expect = 6.190e-9
Identity = 30/46 (65.22%), Postives = 37/46 (80.43%), Query Frame = 1 
Query:  181 IDEIRTDFADSDDNIPLPVELPAFEGLEEAMLVQELRKDRLPGSII 318
            + E++ + ADSDD IPLP  +P F+ LEEAMLV+ELRKDRLPG II
Sbjct: 1886 VKEVKEERADSDDEIPLPEGMPGFQTLEEAMLVRELRKDRLPGKII 1931
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1265.9.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JDC1_9PHAE5.050e-1049.32Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FSX8_ECTSI6.190e-965.22Ubiquitin carboxyl-terminal hydrolase 64E n=1 Tax=... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig1265contigA-nodosum_M_contig1265:42167..43542 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7FSX8
PFAMsUCH
Model size430
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons2
Evalue1.01e-09
EggNOG OGsCOG5077@1|root,KOG4598@2759|Eukaryota
Descriptionthiol-dependent ubiquitin-specific protease activity
Cds size429
COG categoryO
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866701.265241-CDS-A-nodosum_M_contig1265:42166..422261680866701.265241-CDS-A-nodosum_M_contig1265:42166..42226Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1265 42167..42226 -
1680866701.2769926-CDS-A-nodosum_M_contig1265:43173..435421680866701.2769926-CDS-A-nodosum_M_contig1265:43173..43542Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1265 43174..43542 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig1265.9.1prot_A-nodosum_M_contig1265.9.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig1265 42167..43542 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig1265.9.1

>prot_A-nodosum_M_contig1265.9.1 ID=prot_A-nodosum_M_contig1265.9.1|Name=mRNA_A-nodosum_M_contig1265.9.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=143bp
KPKRRKNTRRKKSGRIKTPKESNEVCHRVGGVDSSREGETIAPLHQAAPR
GDSKVGIAGKIDEIRTDFADSDDNIPLPVELPAFEGLEEAMLVQELRKDR
LPGSIIGDNASCRDRDEDTSGDTLTILPAFEPKNGGADDTITP
back to top

mRNA from alignment at A-nodosum_M_contig1265:42167..43542-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig1265.9.1 ID=mRNA_A-nodosum_M_contig1265.9.1|Name=mRNA_A-nodosum_M_contig1265.9.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=1376bp|location=Sequence derived from alignment at A-nodosum_M_contig1265:42167..43542- (Ascophyllum nodosum dioecious)
AAGCCGAAACGACGGAAGAATACCAGGAGAAAAAAGAGCGGACGCATCAA
AACGCCGAAAGAAAGCAATGAGGTTTGCCATAGAGTTGGTGGCGTCGATA
GCTCTCGCGAGGGAGAAACCATCGCGCCCCTGCACCAGGCGGCGCCCCGC
GGAGACAGCAAGGTTGGGATCGCTGGAAAGATTGACGAGATTCGGACGGA
TTTCGCGGATTCGGACGACAACATTCCGTTGCCGGTGGAATTGCCGGCGT
TCGAGGGACTGGAGGAGGCGATGCTAGTACAGGAGCTGAGGAAGGATCGC
CTGCCTGGCAGCATCATCGGAGACAATGCCAGTTGCAGAGATAGAGATGA
AGATACCAGTGGAGACACGGTGCGTGCCTTTGTCTCAATTGTGTGTACAA
CGCTATGTAGTATAGTACCAGTATTTATTTTATACCTTCTTTTCCGGTTA
TGTAAGCTTTCAGCACCTTGTCGCTTCCCTCTCTGCTTCCTTGCTTACCC
CTATTCCGGTAGGAGTATTCTTGAGAGAGAGAGAGAGATCCTCGGTCGGC
ACCCCCTTTAACAACACTCCCTGGTCTCTCTACCTGTGTGTGTGTGTGTG
TGTGTGTGTGTGTGTGTATTTATTAAATTGCACATAACCGCGCAATCCGG
CCCTGTCATCCTAGTCATTCTATGCCACTCGCATTGTGTGTGTGTGTGTG
TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATT
TATTAAATTACACATAACCGCGCAATCCGGCCTTGTCATCCTAGTCATTC
TATGCCACTCGCGTTGATCCTCCCAAGGGGGGATCAATGATACTTGTTAC
GAAAACCTCTGATCAAACGCGACAGAGGGGACACACTCTCTCTACTTGTA
CAAATCTTACTTGAGCCCTGAGCACCTTGTGCTCCCCCCCTGCTTCATTG
TTGCTCCCCAGGTTATCCGAGGTGGCAGCTACTGAACCAACCCTTTCTTT
TCTACATTTTTTTCGCTTTCCACCCATGTCTCCCCCGTTTCCGTATGTGT
GTGTGTATTTATTAAATTGCACATAACCGCGCAATCGGGCCCTGTCATCC
TAGTCATTCTATGCCACTCGCATTGATCCTCCCAAGGGGGGATCAATGAT
ACTTGTTACGAAAACCTCTGTGTATGTGTGCGTGTGCGTGTGTGTGACTC
GCACGATACTTCTTGGCTTGGTCTTTTTTCGCTCATTGGTTGAGTCGCTC
TTTTCCCTTCCCTCGTCCCCATCGTCCCCCTTGTGCTGCTGCTGCTGCTG
CTGCTGCTGGTGGTAGTTGACCATCTTGCCGGCATTTGAACCCAAGAATG
GCGGAGCTGACGACACGATCACACCT
back to top

Coding sequence (CDS) from alignment at A-nodosum_M_contig1265:42167..43542-

>mRNA_A-nodosum_M_contig1265.9.1 ID=mRNA_A-nodosum_M_contig1265.9.1|Name=mRNA_A-nodosum_M_contig1265.9.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=429bp|location=Sequence derived from alignment at A-nodosum_M_contig1265:42167..43542- (Ascophyllum nodosum dioecious)
AAGCCGAAACGACGGAAGAATACCAGGAGAAAAAAGAGCGGACGCATCAA
AACGCCGAAAGAAAGCAATGAGGTTTGCCATAGAGTTGGTGGCGTCGATA
GCTCTCGCGAGGGAGAAACCATCGCGCCCCTGCACCAGGCGGCGCCCCGC
GGAGACAGCAAGGTTGGGATCGCTGGAAAGATTGACGAGATTCGGACGGA
TTTCGCGGATTCGGACGACAACATTCCGTTGCCGGTGGAATTGCCGGCGT
TCGAGGGACTGGAGGAGGCGATGCTAGTACAGGAGCTGAGGAAGGATCGC
CTGCCTGGCAGCATCATCGGAGACAATGCCAGTTGCAGAGATAGAGATGA
AGATACCAGTGGAGACACGTTGACCATCTTGCCGGCATTTGAACCCAAGA
ATGGCGGAGCTGACGACACGATCACACCT
back to top