mRNA_A-nodosum_M_contig1265.28.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig1265.28.1
Unique NamemRNA_A-nodosum_M_contig1265.28.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
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BLAST of mRNA_A-nodosum_M_contig1265.28.1 vs. uniprot
Match: A0A6H5KLE4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLE4_9PHAE)

HSP 1 Score: 89.7 bits (221), Expect = 1.140e-19
Identity = 48/97 (49.48%), Postives = 63/97 (64.95%), Query Frame = 1 
Query:   16 AKGRGRLSHREKERLTVLGEVKLMTERGGWKEVDAEKPASGEEKVVVWKVKRRYRVRTRLASCFCSQCQISRYEECHINRTYPALVPAVIDDKVKDT 306
            ++GRG LS +EK RL     +  +  R   K  +   P SGEE V   KVKR YR+RTRLASCFCS CQ   YE+C++++TYP LVPA+   +VK+T
Sbjct:   96 SEGRGSLSSQEKSRLREFKVLGAVASRWKGKGAELHHPVSGEEDVTCRKVKRTYRLRTRLASCFCSACQRCEYEQCYVSKTYPRLVPALQKGEVKET 192
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BLAST of mRNA_A-nodosum_M_contig1265.28.1 vs. uniprot
Match: A0A6H5JBS1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBS1_9PHAE)

HSP 1 Score: 86.7 bits (213), Expect = 7.140e-18
Identity = 47/97 (48.45%), Postives = 63/97 (64.95%), Query Frame = 1 
Query:   16 AKGRGRLSHREKERLTVLGEVKLMTERGGWKEVDAEKPASGEEKVVVWKVKRRYRVRTRLASCFCSQCQISRYEECHINRTYPALVPAVIDDKVKDT 306
            ++GR  LS +EK RL  +  +  +  R   K    + P SGEE V   KVKR YR+RTRLASCFCS CQ   YE+C++++TYP LVPA+   +VK+T
Sbjct:  253 SEGRVSLSSQEKSRLREVKVLGAVASRWKGKGAGLQDPVSGEEDVTCRKVKRTYRLRTRLASCFCSACQRCEYEQCYVSKTYPRLVPALQQGEVKET 349
[Close]
BLAST of mRNA_A-nodosum_M_contig1265.28.1 vs. uniprot
Match: A0A6H5KI10_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KI10_9PHAE)

HSP 1 Score: 85.1 bits (209), Expect = 3.940e-17
Identity = 52/100 (52.00%), Postives = 66/100 (66.00%), Query Frame = 1 
Query:   16 AKGRGRLSHREKERLTVLGEVKLM-TERGGWKEVDA--EKPASGEEKVVVWKVKRRYRVRTRLASCFCSQCQISRYEECHINRTYPALVPAVIDDKVKDT 306
            ++G GR S+ EK R   LGEVK++      WK   A  + P SGEE V   KVKR Y +RTRLASCFCS CQ S YE+C++++TYP LVPA+    VK+T
Sbjct:  783 SEGGGRSSNLEKSR---LGEVKVLGAVASRWKGQGAGLQDPVSGEEDVTCRKVKRTYSLRTRLASCFCSACQRSEYEQCYVSKTYPRLVPAMQKGVVKET 879
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BLAST of mRNA_A-nodosum_M_contig1265.28.1 vs. uniprot
Match: A0A6H5JDR7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDR7_9PHAE)

HSP 1 Score: 82.4 bits (202), Expect = 4.800e-17
Identity = 44/91 (48.35%), Postives = 59/91 (64.84%), Query Frame = 1 
Query:   34 LSHREKERLTVLGEVKLMTERGGWKEVDAEKPASGEEKVVVWKVKRRYRVRTRLASCFCSQCQISRYEECHINRTYPALVPAVIDDKVKDT 306
            LS +EK RL  +  +  +  R   K    + P SGEE V   KVKR YR+R+RLASCFCS CQ   YE+C +++TYP LVPA+ + +VK+T
Sbjct:   79 LSSQEKSRLREVKVLGAVASRWKGKGAGLQDPVSGEEDVTCRKVKRTYRLRSRLASCFCSACQRCEYEQCDVSKTYPRLVPALQEGEVKET 169
[Close]
BLAST of mRNA_A-nodosum_M_contig1265.28.1 vs. uniprot
Match: A0A6H5L2L6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2L6_9PHAE)

HSP 1 Score: 83.6 bits (205), Expect = 1.350e-16
Identity = 44/95 (46.32%), Postives = 62/95 (65.26%), Query Frame = 1 
Query:   22 GRGRLSHREKERLTVLGEVKLMTERGGWKEVDAEKPASGEEKVVVWKVKRRYRVRTRLASCFCSQCQISRYEECHINRTYPALVPAVIDDKVKDT 306
            GR  LS +EK +L  +  +  +  R   K    + P SGEE V   KVKR YR+RTRLASCFCS CQ   +E+C++++TYP L+PA+ + +VK+T
Sbjct:  579 GRDSLSSQEKSKLVEVKVLGAVASRCKGKGAGLQDPVSGEEDVTCRKVKRTYRLRTRLASCFCSACQRCEHEQCYVSKTYPRLLPALREGEVKET 673
[Close]
BLAST of mRNA_A-nodosum_M_contig1265.28.1 vs. uniprot
Match: A0A6H5JLE6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLE6_9PHAE)

HSP 1 Score: 82.4 bits (202), Expect = 3.160e-16
Identity = 46/94 (48.94%), Postives = 59/94 (62.77%), Query Frame = 1 
Query:   25 RGRLSHREKERLTVLGEVKLMTERGGWKEVDAEKPASGEEKVVVWKVKRRYRVRTRLASCFCSQCQISRYEECHINRTYPALVPAVIDDKVKDT 306
            RG LS +EK RL  +     +  R   K    +   SGEE V   KVKR YR+RTRLASCFCS CQ   YE+C++N+ YP LVPA+ + +VK+T
Sbjct:  319 RGSLSSQEKSRLREVNVSGAVASRWKGKGAGLQVLVSGEEGVTCRKVKRTYRLRTRLASCFCSACQRFEYEQCYVNKKYPRLVPALQEGEVKET 412
[Close]
BLAST of mRNA_A-nodosum_M_contig1265.28.1 vs. uniprot
Match: A0A6H5JQK2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQK2_9PHAE)

HSP 1 Score: 81.3 bits (199), Expect = 8.740e-16
Identity = 45/97 (46.39%), Postives = 63/97 (64.95%), Query Frame = 1 
Query:   16 AKGRGRLSHREKERLTVLGEVKLMTERGGWKEVDAEKPASGEEKVVVWKVKRRYRVRTRLASCFCSQCQISRYEECHINRTYPALVPAVIDDKVKDT 306
            ++G+G+LS  EK RL  +  +  +  R   +    + P SGEE V   KVKR Y +RTRLASCFCS C+ S YE+ ++++TYP LVPA+ D  VK+T
Sbjct:  554 SEGQGQLSSLEKSRLREVKVLGAVASRWKGQGAGLQDPISGEEDVTCKKVKRTYSLRTRLASCFCSACRRSEYEQYYVSKTYPRLVPAMEDGVVKET 650
[Close]
BLAST of mRNA_A-nodosum_M_contig1265.28.1 vs. uniprot
Match: A0A6H5KTJ4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTJ4_9PHAE)

HSP 1 Score: 80.9 bits (198), Expect = 1.170e-15
Identity = 48/98 (48.98%), Postives = 63/98 (64.29%), Query Frame = 1 
Query:   16 AKGRGRLSHREKERLTVLGEVKLMTERGGWKEVDA--EKPASGEEKVVVWKVKRRYRVRTRLASCFCSQCQISRYEECHINRTYPALVPAVIDDKVKD 303
            ++G+G LS  EK RL  +  +  +  R  WK   A  + P S EE V   KVKR Y +RTRLASCFCS C  S YE+C++++TYP LVPA+ DD VK+
Sbjct:  385 SEGQGPLSSLEKSRLRKVKVLGALASR--WKAQGAGLQDPISREEDVTCRKVKRTYSLRTRLASCFCSACLRSEYEQCYVSKTYPRLVPAMKDDVVKE 480
[Close]
BLAST of mRNA_A-nodosum_M_contig1265.28.1 vs. uniprot
Match: A0A6H5JA27_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JA27_9PHAE)

HSP 1 Score: 77.4 bits (189), Expect = 1.160e-14
Identity = 36/60 (60.00%), Postives = 46/60 (76.67%), Query Frame = 1 
Query:  127 PASGEEKVVVWKVKRRYRVRTRLASCFCSQCQISRYEECHINRTYPALVPAVIDDKVKDT 306
            P  GEE V   KVKR YR+RTRLASCFCS CQ   YE+C++++TYP LVPA+ + +VK+T
Sbjct:  209 PVPGEEDVTCRKVKRTYRLRTRLASCFCSACQRCEYEQCYVSKTYPRLVPALQEGEVKET 268
[Close]
BLAST of mRNA_A-nodosum_M_contig1265.28.1 vs. uniprot
Match: A0A6H5L293_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L293_9PHAE)

HSP 1 Score: 77.0 bits (188), Expect = 2.680e-14
Identity = 49/100 (49.00%), Postives = 66/100 (66.00%), Query Frame = 1 
Query:   16 AKGRGRLSHREKERLTVLGEVKLMTERGG-WKEVDA--EKPASGEEKVVVWKVKRRYRVRTRLASCFCSQCQISRYEECHINRTYPALVPAVIDDKVKDT 306
            ++G+G++S  EK RL    EVK++   G  WK   A  +   SGEE V   KVKR Y +RTRLASCFCS C+ S YE+ ++++TYP LVPA+ D  VK+T
Sbjct:  611 SEGQGQMSSLEKSRLR---EVKVLGAVGSRWKGQGAGLQDLISGEEDVTCKKVKRTYSLRTRLASCFCSACRRSEYEQYYVSKTYPRLVPAMEDGVVKET 707
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1265.28.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 12
Match NameE-valueIdentityDescription
A0A6H5KLE4_9PHAE1.140e-1949.48Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JBS1_9PHAE7.140e-1848.45Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KI10_9PHAE3.940e-1752.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JDR7_9PHAE4.800e-1748.35Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L2L6_9PHAE1.350e-1646.32Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JLE6_9PHAE3.160e-1648.94Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JQK2_9PHAE8.740e-1646.39Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KTJ4_9PHAE1.170e-1548.98Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JA27_9PHAE1.160e-1460.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L293_9PHAE2.680e-1449.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig1265contigA-nodosum_M_contig1265:193625..193930 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size306
Hectar predicted targeting categoryother localisation
Exons1
Cds size306
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866703.7029538-CDS-A-nodosum_M_contig1265:193624..1939301680866703.7029538-CDS-A-nodosum_M_contig1265:193624..193930Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1265 193625..193930 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig1265.28.1prot_A-nodosum_M_contig1265.28.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig1265 193625..193930 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig1265.28.1

>prot_A-nodosum_M_contig1265.28.1 ID=prot_A-nodosum_M_contig1265.28.1|Name=mRNA_A-nodosum_M_contig1265.28.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=102bp
MSSWCAKGRGRLSHREKERLTVLGEVKLMTERGGWKEVDAEKPASGEEKV
VVWKVKRRYRVRTRLASCFCSQCQISRYEECHINRTYPALVPAVIDDKVK
DT
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mRNA from alignment at A-nodosum_M_contig1265:193625..193930+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig1265.28.1 ID=mRNA_A-nodosum_M_contig1265.28.1|Name=mRNA_A-nodosum_M_contig1265.28.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=306bp|location=Sequence derived from alignment at A-nodosum_M_contig1265:193625..193930+ (Ascophyllum nodosum dioecious)
ATGTCCAGCTGGTGCGCAAAAGGGAGAGGGCGGTTGTCGCATAGAGAAAA
GGAGCGGTTGACGGTGCTGGGGGAGGTTAAGTTGATGACAGAGAGGGGAG
GTTGGAAAGAGGTTGACGCAGAGAAGCCGGCATCAGGCGAAGAGAAGGTT
GTTGTCTGGAAGGTTAAGAGAAGGTACCGTGTTAGGACCCGGTTGGCGTC
TTGCTTTTGCTCACAGTGCCAGATCTCTAGGTACGAGGAGTGCCACATCA
ACAGAACGTACCCGGCTCTCGTTCCTGCGGTAATAGACGATAAAGTAAAG
GACACG
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Coding sequence (CDS) from alignment at A-nodosum_M_contig1265:193625..193930+

>mRNA_A-nodosum_M_contig1265.28.1 ID=mRNA_A-nodosum_M_contig1265.28.1|Name=mRNA_A-nodosum_M_contig1265.28.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=306bp|location=Sequence derived from alignment at A-nodosum_M_contig1265:193625..193930+ (Ascophyllum nodosum dioecious)
ATGTCCAGCTGGTGCGCAAAAGGGAGAGGGCGGTTGTCGCATAGAGAAAA
GGAGCGGTTGACGGTGCTGGGGGAGGTTAAGTTGATGACAGAGAGGGGAG
GTTGGAAAGAGGTTGACGCAGAGAAGCCGGCATCAGGCGAAGAGAAGGTT
GTTGTCTGGAAGGTTAAGAGAAGGTACCGTGTTAGGACCCGGTTGGCGTC
TTGCTTTTGCTCACAGTGCCAGATCTCTAGGTACGAGGAGTGCCACATCA
ACAGAACGTACCCGGCTCTCGTTCCTGCGGTAATAGACGATAAAGTAAAG
GACACG
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