mRNA_A-nodosum_M_contig1264.8.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig1264.8.1
Unique NamemRNA_A-nodosum_M_contig1264.8.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1264.8.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig1264contigA-nodosum_M_contig1264:110000..111943 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size240
Hectar predicted targeting categorymitochondrion
Exons2
Cds size240
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866700.6017056-CDS-A-nodosum_M_contig1264:109999..1100431680866700.6017056-CDS-A-nodosum_M_contig1264:109999..110043Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1264 110000..110043 +
1680866700.6101403-CDS-A-nodosum_M_contig1264:111747..1119431680866700.6101403-CDS-A-nodosum_M_contig1264:111747..111943Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1264 111748..111943 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig1264.8.1prot_A-nodosum_M_contig1264.8.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig1264 110000..111943 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig1264.8.1

>prot_A-nodosum_M_contig1264.8.1 ID=prot_A-nodosum_M_contig1264.8.1|Name=mRNA_A-nodosum_M_contig1264.8.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=80bp
SRRRVLRITLVVPNRRFHQMYGVAENACCRTTVSKSGVPYHREGGRYDSE
PERSQREAVEDDDSPTTTITCLCTNGKEG*
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mRNA from alignment at A-nodosum_M_contig1264:110000..111943+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig1264.8.1 ID=mRNA_A-nodosum_M_contig1264.8.1|Name=mRNA_A-nodosum_M_contig1264.8.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=1944bp|location=Sequence derived from alignment at A-nodosum_M_contig1264:110000..111943+ (Ascophyllum nodosum dioecious)
AGCAGGCGTCGAGTTCTACGGATAACATTGGTCGTCCCCAACAGGTGCGC
ACTTCTTCGAGCCCGGCTCATGAGAAGGTAGGAGCTTTGCCATGGTTCGG
CCGGTCGAGAAGAAATTTGTGCCTCGAACGAACTCTTCAGCCAACTGAAA
AATTAACTTAGAAAGATTATATCATACTGTTGATTCAATGTTACTATCAA
TACTGTACCTTACTTAGCTGCACTAATATAGTATTCTAGTCTGGTGGGTC
TAGAATATACAACAAAAAACTACTTCTCGAATAGAGCCTATACACAGTAC
TAAGCTTCATACACTTGATATTGGTACAATATGATGAACGCATTTTCAAT
ACCACAGCCGCTTCCTCTTGTATGGAGAGTACTATTACCGTCGCACGTTT
TTCCCTTCCGGGTTGTGCTTTCCTATTAATATTAATATTAATACCTTGTG
ATCACTGGAATTTGGATGTTTCTCAGACACCTGATATTTGGCTTTGTTTA
TTGGTACAACAGACAGGTACTAATACGTTTATAAACGGCGGACTCAGTGA
GCGCCATCGGTACACATTTGCGTGACTCGATAAACTCGGGACTGACCCGA
TGGTATATGATGCTGGATGCCGCCGCGGAACTCAGGAGGAATCCCGTAAG
TAAGGACCAGATAGCCTGAGTATGGAGAATGAGCAGGTTGACGCGGGACG
GGACGGCTGAACCCGTCCCGTGAGACCAAATTCCCAGGCACGTACGGGGA
CAGGGGAATACTCATTTTCCCTGTTCAGCTGACCACGAGCAGGATTGGCA
ACCTTACCCGGTTGATCCATACTCTGCTATATGTGATGACCATACATCCT
ATTATTGTATACTGTAATATTATTAAAGTATTTTCAATATTGTGTTGTTT
GGGTTTTGTCTGGTGACCCTGCATGGCGATTAACCTAAGTGTACAACATA
ACGGAGGGTTTCTCCTCGGTATTATACTAATGACCCAATGTTACTACCTT
CGGGGAACCCGTTTAAATGCCACGAAGAGGTCTTGTATTCGGAGCCTATG
ATCCCACCCACTATAATTTCCCCTCTGACTGAAGGATGCTTATAAAGTGT
AGATGCGTTCAGATTTTCATTTAAACAACCAAGCCCTATTTATGTATGGC
CCGAAGGCAATATTATCGTATAGTATTATTATCCTCTTAAGTATGTACTA
CATTGTTTGTTTGGTTATGCTTGGTGGCTCTGTGTATGATTAATATAAAT
ACCATGTAGAGGCTTTGCAGTTATGGCCTATATAACAGTATATTATTTAT
ATTATTACTACCATGTTTGATGGTGTAATACTGTACATTGGTTTCTGTAC
ATTGGTTTTGTGGTTACTGTTTTTCTGGTATCCCTGCATGGCGATTAATG
TAAGTGTACAGTACAACGGTGGGCTTCTCCCCGACATTATACTGCTGACC
CGATGTTATTGCCATCGGGGAACCCCTTTAAACGCCATGAAGATGTTTTT
TATTTGCAGCCTTTGATCCAACCTAAACGTTTGGACATTTTTCCCCCTGT
ACTGGGGGATGCTCAGAAGGTCTAGGTGCGTTCTTTTTTTCTTTTAAACT
CATACAGAGTATCGTGAGAGTTCAATCAAACAATCACCGATACTGTACAA
AAGTTTTGTTCTCATGCCAAAAATAGAATTTGGTTAGGATATGTCTAACT
AACCTCTGTTCATTCATGGTTCCGGCTGGCGTTGCAATTTCCACGCAGAC
GCTTTCATCAAATGTATGGAGTCGCCGAGAACGCATGTTGTCGTACGACC
GTGTCGAAGAGCGGTGTACCATACCATAGAGAAGGTGGTCGCTATGATTC
TGAACCGGAACGATCTCAGCGAGAAGCGGTTGAGGATGACGATTCTCCAA
CAACTACGATCACCTGTCTCTGCACGAACGGCAAAGAAGGTTAA
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Coding sequence (CDS) from alignment at A-nodosum_M_contig1264:110000..111943+

>mRNA_A-nodosum_M_contig1264.8.1 ID=mRNA_A-nodosum_M_contig1264.8.1|Name=mRNA_A-nodosum_M_contig1264.8.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=240bp|location=Sequence derived from alignment at A-nodosum_M_contig1264:110000..111943+ (Ascophyllum nodosum dioecious)
AGCAGGCGTCGAGTTCTACGGATAACATTGGTCGTCCCCAACAGACGCTT
TCATCAAATGTATGGAGTCGCCGAGAACGCATGTTGTCGTACGACCGTGT
CGAAGAGCGGTGTACCATACCATAGAGAAGGTGGTCGCTATGATTCTGAA
CCGGAACGATCTCAGCGAGAAGCGGTTGAGGATGACGATTCTCCAACAAC
TACGATCACCTGTCTCTGCACGAACGGCAAAGAAGGTTAA
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