mRNA_A-nodosum_M_contig1264.20.1 (mRNA) Ascophyllum nodosum dioecious
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Overview
Homology
BLAST of mRNA_A-nodosum_M_contig1264.20.1 vs. uniprot
Match: D8LEW9_ECTSI (USP domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEW9_ECTSI) HSP 1 Score: 89.7 bits (221), Expect = 5.320e-19 Identity = 40/62 (64.52%), Postives = 49/62 (79.03%), Query Frame = 1
Query: 52 SGPLPRGLANASGENNCFLNVVVQSLWHLDTFREKFGGNTDSDSXXXXSTA-GAAWGKKPRV 234
S P+PRGL NA+G+NNCFLNVVVQSLWHL+ FR +FGG+ DS+S + A AWGKKP+V
Sbjct: 1528 SAPMPRGLVNATGQNNCFLNVVVQSLWHLEAFRAQFGGSGDSNSGTTNAAAVSGAWGKKPQV 1589
BLAST of mRNA_A-nodosum_M_contig1264.20.1 vs. uniprot
Match: A0A6H5KBH4_9PHAE (USP domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBH4_9PHAE) HSP 1 Score: 87.4 bits (215), Expect = 3.460e-18 Identity = 39/62 (62.90%), Postives = 49/62 (79.03%), Query Frame = 1
Query: 52 SGPLPRGLANASGENNCFLNVVVQSLWHLDTFREKFGGNTDSDSXXXXSTA-GAAWGKKPRV 234
S P+PRGL NA+G+NNCFLNVVVQSLWHL+ FR +FGG+ S+S ++A AWGKKP+V
Sbjct: 2060 SAPMPRGLVNATGQNNCFLNVVVQSLWHLEAFRAQFGGSGGSNSCTTTASAVSGAWGKKPQV 2121
BLAST of mRNA_A-nodosum_M_contig1264.20.1 vs. uniprot
Match: A0A7R8UZA6_HERIL (Hypothetical protein n=1 Tax=Hermetia illucens TaxID=343691 RepID=A0A7R8UZA6_HERIL) HSP 1 Score: 62.4 bits (150), Expect = 8.350e-11 Identity = 28/49 (57.14%), Postives = 30/49 (61.22%), Query Frame = 1
Query: 13 EVASTTKNGFPSPSGPLPRGLANASGENNCFLNVVVQSLWHLDTFREKF 159
E T K F SP P +GL NA G+NNCFLN VQ LWHLD FR F
Sbjct: 19 ERMGTLKTAFLSPVEPSSKGLLNAPGQNNCFLNCAVQVLWHLDAFRRSF 67
BLAST of mRNA_A-nodosum_M_contig1264.20.1 vs. uniprot
Match: A0A7S3UU50_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UU50_HETAK) HSP 1 Score: 64.7 bits (156), Expect = 2.830e-10 Identity = 26/33 (78.79%), Postives = 28/33 (84.85%), Query Frame = 1
Query: 61 LPRGLANASGENNCFLNVVVQSLWHLDTFREKF 159
PRGL N +G+NNCFLNVVVQSLWHLD FRE F
Sbjct: 269 FPRGLTNETGQNNCFLNVVVQSLWHLDAFREPF 301
BLAST of mRNA_A-nodosum_M_contig1264.20.1 vs. uniprot
Match: L8GH96_ACACA (Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8GH96_ACACA) HSP 1 Score: 62.8 bits (151), Expect = 1.550e-9 Identity = 28/44 (63.64%), Postives = 34/44 (77.27%), Query Frame = 1
Query: 43 PSPSGPLPRGLANASGENNCFLNVVVQSLWHLDTFREKFGGNTD 174
PSP+ L +GL N GENNCFLNVV+QSLWHLD+FR +F G +
Sbjct: 16 PSPNTNL-KGLINPLGENNCFLNVVIQSLWHLDSFRTRFEGTEE 58
BLAST of mRNA_A-nodosum_M_contig1264.20.1 vs. uniprot
Match: A0A067CSW7_SAPPC (USP domain-containing protein n=1 Tax=Saprolegnia parasitica (strain CBS 223.65) TaxID=695850 RepID=A0A067CSW7_SAPPC) HSP 1 Score: 60.5 bits (145), Expect = 1.010e-8 Identity = 26/37 (70.27%), Postives = 30/37 (81.08%), Query Frame = 1
Query: 61 LPRGLANASGENNCFLNVVVQSLWHLDTFREKFGGNT 171
L +GL N +GENNCFLNVVVQSL+HL TFR+ FG T
Sbjct: 401 LEKGLRNETGENNCFLNVVVQSLFHLQTFRDAFGAIT 437
BLAST of mRNA_A-nodosum_M_contig1264.20.1 vs. uniprot
Match: A0A2P6NRT8_9EUKA (USP domain-containing protein n=1 Tax=Planoprotostelium fungivorum TaxID=1890364 RepID=A0A2P6NRT8_9EUKA) HSP 1 Score: 60.1 bits (144), Expect = 1.360e-8 Identity = 23/38 (60.53%), Postives = 29/38 (76.32%), Query Frame = 1
Query: 61 LPRGLANASGENNCFLNVVVQSLWHLDTFREKFGGNTD 174
+ +GL N SG+NNCFLNV++QSLWHL TFR F + D
Sbjct: 232 MDKGLTNKSGQNNCFLNVIIQSLWHLRTFRRSFFSHQD 269
BLAST of mRNA_A-nodosum_M_contig1264.20.1 vs. uniprot
Match: A0A2P6N2F1_9EUKA (Inactive ubiquitin carboxyl-terminal hydrolase 54-like n=1 Tax=Planoprotostelium fungivorum TaxID=1890364 RepID=A0A2P6N2F1_9EUKA) HSP 1 Score: 59.3 bits (142), Expect = 2.520e-8 Identity = 24/34 (70.59%), Postives = 28/34 (82.35%), Query Frame = 1
Query: 58 PLPRGLANASGENNCFLNVVVQSLWHLDTFREKF 159
P +GLAN GENNCFLNVV+Q+LWHL FR+KF
Sbjct: 19 PDEKGLANNFGENNCFLNVVIQALWHLTPFRQKF 52
BLAST of mRNA_A-nodosum_M_contig1264.20.1 vs. uniprot
Match: A0A7S3C552_9VIRI (Hypothetical protein (Fragment) n=1 Tax=Prasinoderma singulare TaxID=676789 RepID=A0A7S3C552_9VIRI) HSP 1 Score: 57.8 bits (138), Expect = 2.810e-8 Identity = 26/38 (68.42%), Postives = 30/38 (78.95%), Query Frame = 1
Query: 43 PSPSGPLPRGLANASGENNCFLNVVVQSLWHLDTFREK 156
PSP+ GLANA+GE NCFLNVVVQSLWHL FR++
Sbjct: 16 PSPAVRGTTGLANATGEYNCFLNVVVQSLWHLPPFRQQ 53
BLAST of mRNA_A-nodosum_M_contig1264.20.1 vs. uniprot
Match: A0A7S4GGM6_9EUGL (Hypothetical protein (Fragment) n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S4GGM6_9EUGL) HSP 1 Score: 58.9 bits (141), Expect = 3.380e-8 Identity = 23/34 (67.65%), Postives = 27/34 (79.41%), Query Frame = 1
Query: 67 RGLANASGENNCFLNVVVQSLWHLDTFREKFGGN 168
+G+ NA GENNCFLNVV+QSLWH FRE F G+
Sbjct: 7 KGIVNALGENNCFLNVVIQSLWHTSAFREAFKGH 40 The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1264.20.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_A-nodosum_M_contig1264.20.1 >prot_A-nodosum_M_contig1264.20.1 ID=prot_A-nodosum_M_contig1264.20.1|Name=mRNA_A-nodosum_M_contig1264.20.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=87bp MTGVEVASTTKNGFPSPSGPLPRGLANASGENNCFLNVVVQSLWHLDTFRback to top mRNA from alignment at A-nodosum_M_contig1264:226626..226886- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_A-nodosum_M_contig1264.20.1 ID=mRNA_A-nodosum_M_contig1264.20.1|Name=mRNA_A-nodosum_M_contig1264.20.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=261bp|location=Sequence derived from alignment at A-nodosum_M_contig1264:226626..226886- (Ascophyllum nodosum dioecious)back to top Coding sequence (CDS) from alignment at A-nodosum_M_contig1264:226626..226886- >mRNA_A-nodosum_M_contig1264.20.1 ID=mRNA_A-nodosum_M_contig1264.20.1|Name=mRNA_A-nodosum_M_contig1264.20.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=261bp|location=Sequence derived from alignment at A-nodosum_M_contig1264:226626..226886- (Ascophyllum nodosum dioecious)back to top |