mRNA_A-nodosum_M_contig1264.20.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig1264.20.1
Unique NamemRNA_A-nodosum_M_contig1264.20.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
BLAST of mRNA_A-nodosum_M_contig1264.20.1 vs. uniprot
Match: D8LEW9_ECTSI (USP domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEW9_ECTSI)

HSP 1 Score: 89.7 bits (221), Expect = 5.320e-19
Identity = 40/62 (64.52%), Postives = 49/62 (79.03%), Query Frame = 1
Query:   52 SGPLPRGLANASGENNCFLNVVVQSLWHLDTFREKFGGNTDSDSXXXXSTA-GAAWGKKPRV 234
            S P+PRGL NA+G+NNCFLNVVVQSLWHL+ FR +FGG+ DS+S    + A   AWGKKP+V
Sbjct: 1528 SAPMPRGLVNATGQNNCFLNVVVQSLWHLEAFRAQFGGSGDSNSGTTNAAAVSGAWGKKPQV 1589          
BLAST of mRNA_A-nodosum_M_contig1264.20.1 vs. uniprot
Match: A0A6H5KBH4_9PHAE (USP domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBH4_9PHAE)

HSP 1 Score: 87.4 bits (215), Expect = 3.460e-18
Identity = 39/62 (62.90%), Postives = 49/62 (79.03%), Query Frame = 1
Query:   52 SGPLPRGLANASGENNCFLNVVVQSLWHLDTFREKFGGNTDSDSXXXXSTA-GAAWGKKPRV 234
            S P+PRGL NA+G+NNCFLNVVVQSLWHL+ FR +FGG+  S+S    ++A   AWGKKP+V
Sbjct: 2060 SAPMPRGLVNATGQNNCFLNVVVQSLWHLEAFRAQFGGSGGSNSCTTTASAVSGAWGKKPQV 2121          
BLAST of mRNA_A-nodosum_M_contig1264.20.1 vs. uniprot
Match: A0A7R8UZA6_HERIL (Hypothetical protein n=1 Tax=Hermetia illucens TaxID=343691 RepID=A0A7R8UZA6_HERIL)

HSP 1 Score: 62.4 bits (150), Expect = 8.350e-11
Identity = 28/49 (57.14%), Postives = 30/49 (61.22%), Query Frame = 1
Query:   13 EVASTTKNGFPSPSGPLPRGLANASGENNCFLNVVVQSLWHLDTFREKF 159
            E   T K  F SP  P  +GL NA G+NNCFLN  VQ LWHLD FR  F
Sbjct:   19 ERMGTLKTAFLSPVEPSSKGLLNAPGQNNCFLNCAVQVLWHLDAFRRSF 67          
BLAST of mRNA_A-nodosum_M_contig1264.20.1 vs. uniprot
Match: A0A7S3UU50_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UU50_HETAK)

HSP 1 Score: 64.7 bits (156), Expect = 2.830e-10
Identity = 26/33 (78.79%), Postives = 28/33 (84.85%), Query Frame = 1
Query:   61 LPRGLANASGENNCFLNVVVQSLWHLDTFREKF 159
             PRGL N +G+NNCFLNVVVQSLWHLD FRE F
Sbjct:  269 FPRGLTNETGQNNCFLNVVVQSLWHLDAFREPF 301          
BLAST of mRNA_A-nodosum_M_contig1264.20.1 vs. uniprot
Match: L8GH96_ACACA (Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8GH96_ACACA)

HSP 1 Score: 62.8 bits (151), Expect = 1.550e-9
Identity = 28/44 (63.64%), Postives = 34/44 (77.27%), Query Frame = 1
Query:   43 PSPSGPLPRGLANASGENNCFLNVVVQSLWHLDTFREKFGGNTD 174
            PSP+  L +GL N  GENNCFLNVV+QSLWHLD+FR +F G  +
Sbjct:   16 PSPNTNL-KGLINPLGENNCFLNVVIQSLWHLDSFRTRFEGTEE 58          
BLAST of mRNA_A-nodosum_M_contig1264.20.1 vs. uniprot
Match: A0A067CSW7_SAPPC (USP domain-containing protein n=1 Tax=Saprolegnia parasitica (strain CBS 223.65) TaxID=695850 RepID=A0A067CSW7_SAPPC)

HSP 1 Score: 60.5 bits (145), Expect = 1.010e-8
Identity = 26/37 (70.27%), Postives = 30/37 (81.08%), Query Frame = 1
Query:   61 LPRGLANASGENNCFLNVVVQSLWHLDTFREKFGGNT 171
            L +GL N +GENNCFLNVVVQSL+HL TFR+ FG  T
Sbjct:  401 LEKGLRNETGENNCFLNVVVQSLFHLQTFRDAFGAIT 437          
BLAST of mRNA_A-nodosum_M_contig1264.20.1 vs. uniprot
Match: A0A2P6NRT8_9EUKA (USP domain-containing protein n=1 Tax=Planoprotostelium fungivorum TaxID=1890364 RepID=A0A2P6NRT8_9EUKA)

HSP 1 Score: 60.1 bits (144), Expect = 1.360e-8
Identity = 23/38 (60.53%), Postives = 29/38 (76.32%), Query Frame = 1
Query:   61 LPRGLANASGENNCFLNVVVQSLWHLDTFREKFGGNTD 174
            + +GL N SG+NNCFLNV++QSLWHL TFR  F  + D
Sbjct:  232 MDKGLTNKSGQNNCFLNVIIQSLWHLRTFRRSFFSHQD 269          
BLAST of mRNA_A-nodosum_M_contig1264.20.1 vs. uniprot
Match: A0A2P6N2F1_9EUKA (Inactive ubiquitin carboxyl-terminal hydrolase 54-like n=1 Tax=Planoprotostelium fungivorum TaxID=1890364 RepID=A0A2P6N2F1_9EUKA)

HSP 1 Score: 59.3 bits (142), Expect = 2.520e-8
Identity = 24/34 (70.59%), Postives = 28/34 (82.35%), Query Frame = 1
Query:   58 PLPRGLANASGENNCFLNVVVQSLWHLDTFREKF 159
            P  +GLAN  GENNCFLNVV+Q+LWHL  FR+KF
Sbjct:   19 PDEKGLANNFGENNCFLNVVIQALWHLTPFRQKF 52          
BLAST of mRNA_A-nodosum_M_contig1264.20.1 vs. uniprot
Match: A0A7S3C552_9VIRI (Hypothetical protein (Fragment) n=1 Tax=Prasinoderma singulare TaxID=676789 RepID=A0A7S3C552_9VIRI)

HSP 1 Score: 57.8 bits (138), Expect = 2.810e-8
Identity = 26/38 (68.42%), Postives = 30/38 (78.95%), Query Frame = 1
Query:   43 PSPSGPLPRGLANASGENNCFLNVVVQSLWHLDTFREK 156
            PSP+     GLANA+GE NCFLNVVVQSLWHL  FR++
Sbjct:   16 PSPAVRGTTGLANATGEYNCFLNVVVQSLWHLPPFRQQ 53          
BLAST of mRNA_A-nodosum_M_contig1264.20.1 vs. uniprot
Match: A0A7S4GGM6_9EUGL (Hypothetical protein (Fragment) n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S4GGM6_9EUGL)

HSP 1 Score: 58.9 bits (141), Expect = 3.380e-8
Identity = 23/34 (67.65%), Postives = 27/34 (79.41%), Query Frame = 1
Query:   67 RGLANASGENNCFLNVVVQSLWHLDTFREKFGGN 168
            +G+ NA GENNCFLNVV+QSLWH   FRE F G+
Sbjct:    7 KGIVNALGENNCFLNVVIQSLWHTSAFREAFKGH 40          
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1264.20.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LEW9_ECTSI5.320e-1964.52USP domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5KBH4_9PHAE3.460e-1862.90USP domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A7R8UZA6_HERIL8.350e-1157.14Hypothetical protein n=1 Tax=Hermetia illucens Tax... [more]
A0A7S3UU50_HETAK2.830e-1078.79Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
L8GH96_ACACA1.550e-963.64Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Acan... [more]
A0A067CSW7_SAPPC1.010e-870.27USP domain-containing protein n=1 Tax=Saprolegnia ... [more]
A0A2P6NRT8_9EUKA1.360e-860.53USP domain-containing protein n=1 Tax=Planoprotost... [more]
A0A2P6N2F1_9EUKA2.520e-870.59Inactive ubiquitin carboxyl-terminal hydrolase 54-... [more]
A0A7S3C552_9VIRI2.810e-868.42Hypothetical protein (Fragment) n=1 Tax=Prasinoder... [more]
A0A7S4GGM6_9EUGL3.380e-867.65Hypothetical protein (Fragment) n=1 Tax=Eutreptiel... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig1264contigA-nodosum_M_contig1264:226626..226886 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LEW9
PFAMsUCH
Model size261
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons1
Evalue8.72e-20
EggNOG OGsKOG1887@1|root,KOG1887@2759|Eukaryota
Descriptionprotein deubiquitination
Cds size261
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866700.9830077-CDS-A-nodosum_M_contig1264:226625..2268861680866700.9830077-CDS-A-nodosum_M_contig1264:226625..226886Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1264 226626..226886 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig1264.20.1prot_A-nodosum_M_contig1264.20.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig1264 226626..226886 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig1264.20.1

>prot_A-nodosum_M_contig1264.20.1 ID=prot_A-nodosum_M_contig1264.20.1|Name=mRNA_A-nodosum_M_contig1264.20.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=87bp
MTGVEVASTTKNGFPSPSGPLPRGLANASGENNCFLNVVVQSLWHLDTFR
EKFGGNTDSDSNSNSSTAGAAWGKKPRVRSESSFSR*
back to top

mRNA from alignment at A-nodosum_M_contig1264:226626..226886-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig1264.20.1 ID=mRNA_A-nodosum_M_contig1264.20.1|Name=mRNA_A-nodosum_M_contig1264.20.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=261bp|location=Sequence derived from alignment at A-nodosum_M_contig1264:226626..226886- (Ascophyllum nodosum dioecious)
ATGACAGGGGTAGAGGTGGCGTCAACAACGAAGAACGGTTTCCCCTCTCC GTCGGGTCCATTGCCTCGTGGTCTCGCCAACGCGTCGGGAGAAAACAATT GTTTTCTCAACGTCGTGGTGCAATCTCTGTGGCACCTGGATACGTTCCGC GAGAAATTTGGCGGCAACACCGACAGCGACAGCAACAGCAACAGCAGCAC GGCGGGGGCGGCATGGGGAAAGAAGCCACGGGTACGCTCCGAGTCTTCTT TTTCTCGATAG
back to top

Coding sequence (CDS) from alignment at A-nodosum_M_contig1264:226626..226886-

>mRNA_A-nodosum_M_contig1264.20.1 ID=mRNA_A-nodosum_M_contig1264.20.1|Name=mRNA_A-nodosum_M_contig1264.20.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=261bp|location=Sequence derived from alignment at A-nodosum_M_contig1264:226626..226886- (Ascophyllum nodosum dioecious)
ATGACAGGGGTAGAGGTGGCGTCAACAACGAAGAACGGTTTCCCCTCTCC
GTCGGGTCCATTGCCTCGTGGTCTCGCCAACGCGTCGGGAGAAAACAATT
GTTTTCTCAACGTCGTGGTGCAATCTCTGTGGCACCTGGATACGTTCCGC
GAGAAATTTGGCGGCAACACCGACAGCGACAGCAACAGCAACAGCAGCAC
GGCGGGGGCGGCATGGGGAAAGAAGCCACGGGTACGCTCCGAGTCTTCTT
TTTCTCGATAG
back to top