mRNA_A-nodosum_M_contig1263.17.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig1263.17.1
Unique NamemRNA_A-nodosum_M_contig1263.17.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1263.17.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig1263contigA-nodosum_M_contig1263:179488..183881 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size505
Hectar predicted targeting categoryother localisation
Exons3
Cds size261
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866699.6359313-UTR-A-nodosum_M_contig1263:179487..1796461680866699.6359313-UTR-A-nodosum_M_contig1263:179487..179646Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig1263 179488..179646 +
1680866699.6671245-UTR-A-nodosum_M_contig1263:181290..1812951680866699.6671245-UTR-A-nodosum_M_contig1263:181290..181295Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig1263 181291..181295 +
1680866699.6773815-UTR-A-nodosum_M_contig1263:183801..1838811680866699.6773815-UTR-A-nodosum_M_contig1263:183801..183881Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig1263 183802..183881 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866699.6467018-CDS-A-nodosum_M_contig1263:179646..1797701680866699.6467018-CDS-A-nodosum_M_contig1263:179646..179770Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1263 179647..179770 +
1680866699.6551974-CDS-A-nodosum_M_contig1263:181153..1812901680866699.6551974-CDS-A-nodosum_M_contig1263:181153..181290Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1263 181154..181290 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig1263.17.1prot_A-nodosum_M_contig1263.17.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig1263 179647..181290 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig1263.17.1

>prot_A-nodosum_M_contig1263.17.1 ID=prot_A-nodosum_M_contig1263.17.1|Name=mRNA_A-nodosum_M_contig1263.17.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=87bp
MKRWLSRREMSRSRVKGGRDEGTTETAWACAVCSRTRTAAVGGAQMRFLD
DCGTSHEPSFFILHSRSTVMHAFWTQTISFSILLQR*
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mRNA from alignment at A-nodosum_M_contig1263:179488..183881+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig1263.17.1 ID=mRNA_A-nodosum_M_contig1263.17.1|Name=mRNA_A-nodosum_M_contig1263.17.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=4394bp|location=Sequence derived from alignment at A-nodosum_M_contig1263:179488..183881+ (Ascophyllum nodosum dioecious)
CAGCAGCATGGATAGCGTTTCAAGAAGCCGGGACCGTTGTAAAAGTCTAC
TCTTGACGATACCTCCGACAAGTACTGTGCTTGCGTATGGACGGCACGAA
GGCGGAGAATATGACGTTCCTTCGCCTGAACAAGCAACCCATCCTCGAAA
GAGTGCTCCATGAAGAGATGGCTCTCACGAAGGGAGATGTCGCGCAGCAG
AGTTAAGGGCGGCCGTGACGAAGGAACAACTGAAACTGCTTGGGCATGCG
CAGTCTGCTCTCGTACGAGAACCGCCGCCGTAGGTGCGTCCAGCTCTGCG
AACGATATGGTTTCCTTTGTACTCTACGAGTACCTGCTCCTACTTTAGAA
ATCAGAGTCAAACCCAGACCCGATTTGATCGCCTGCTTGGGGATGCACAG
TCTGCTCGTACGAGAACCGCCGCCGGAGGTGCGTCCAGCTCTGCGAACGA
TATGATTTCCTTTCTATTCTACGAGTACCTGCTCCTACTTTAGAAATCAG
AGTCAAACCCAGACCCGATTTGATCGCCGGGGTCCCGTAAGAGTTGCTTG
AGCGTTGTTCCAAGCCGCCCCGACACTACTATTATTGTATCGTACACGCA
ACAGAACGTTAGCGCTGTCCCCTAGCGAGTGCCCCTCCCATGTTTGTTTT
ACGCGCGTCCGCCTACGAATGAATGAGTATGCCCGATGCTTCACCTGCTT
TCCTGCGTGTTTCTGCGCCCACCTATTCTAAACTTCTTCGCGGTACGGCC
TTATTTTTTCCCCGTGTACTTATTTTCGTTTTTAAAGAAAAAAATGAACG
CACCTAGACTTTCTGAGCACCCTCCAGCCAGGGGAAAGGAATGCCACAAC
GTTCAGTCAGGTGGGATCATAGGCTGCAAAGACGAAACCTCTTCATGGCA
TTTGATCGGGTCCCCAAATGAAAGTAGCATTGGGTCAACCGTATCAAGTC
GGGGAGAAACCCACCGATAAACTGTACAATTCTGTTGTCTACTGTTGTAA
TATGCTTTCGTTGGGGATTTGTCGTTTTCTAGTTTCTTCCCATCCCTATC
CCTCCCCGGTTATCACCTACCAGGTATAATGGAAAGTCTCTGAGCTGGAT
GGGACTCACACGGGAGAGGTGGTGCTGTACTAGGGATTTGATGAGCAGGC
TCGACAAGAACACATGTCAGACGAGTATAAAGACCGATATATTATTCGGT
GCCGCCGTAACCCATCCTGGGTCTATCGGGCGGACACAAGATTACCAACT
GCACCACCGGGGCGACCGGGTCGAAAAAATAACAATTACTACAACAGTAC
AGTAGTACAGTGGTAGTAGCAGCTCCATACACTACtTACTGTGCGTACCT
CCGTCTTACTGGTACTATAAATACCACTTTCTGTATGTTTCAAGAAAAAT
CAGAACACACCTAGACCTTCTGAGCATCCCCCGGTTTTGGGGGAAAAAAT
GTCAAAACGTTTAGGTGGGATCAAAGGCTGCAAATACAAACCTCTTCATG
GCATTTAAACAGGTTCCCCGATGCAGATAACATTGGGTCCACAGCAGTAT
AATGTCGGGGAGAAACCCACCGTTATACTGTACATTGACATTAATCGCCA
TGCACGTTTTTTTCCAAACTTAAACTTGTGTCTTGTATTTCTGTCACTTC
AATACACGGCATGCAGGTGGCGCACAGATGCGTTTTCTGGATGATTGTGG
AACAAGTCATGAGCCTTCGTTCTTCATTCTTCATTCTCGTTCAACGGTGA
TGCACGCGTTTTGGACACAAACAATATCTTTCTCCATTCTCCTTCAACGG
TGATGTACGTATGTACGCGTTTTGGACACCAACAATATCTTTAAGCAACC
AGCCGTTCAATAACTTACGACCTCCAAAAGTAGTTGAATGCTGTACTTCT
TGTTTAAAGAAAAATCTGAACGCATCTAAACCTACCTGCTGATCATCCAT
CCAGTCAAAGAAAGGGGAAAATGTCAAAATGTCAGAACGTTTTTTAGGAC
AAAAACTCTTCATCATGATGGGTTTAATTGGGTTCCCCGATGGCGCAGAC
ATTACTTGTGGTTGTTCTTGCGTTCTTCACGTTAACAGACACTAATATAT
CATAAGATCAACAACAACAGTTTAATACCGTGGCAGAAACTGTTAGAATT
ATAGAATTATACCAGGTAGTCCTTTAGTTGTTCAAAAATTGCGAGACAGT
AATATATCGTAGGGTCAACAACAACAACACTCCACTTTCCAACCCCAAAA
ACATCTGCCCAAAATCTGATCTTCGAGATATTCTGCCTGACCATCCACTG
CCCTCACTCCCCCAACAACTCTACACATCGGTATTCTCTCCTTGATAGCA
TAGTGAATTGACAACCACTGTCTGTCCCGGCCTCGATATCAAAAGATTCC
TTTCAATAGAAACCCTCCGTCATACCGTATGTATGTACGCTTATATGCAT
ACCACACCAAAACACAGGCGAAATAAAGAACACGAGGAATCTGGATATAA
CTCAGTTAGTTGTGTTACATTATGAAGAATTTGGTATCGGGTTCAAGCAT
AAGTCTATTGTGATGGGCGAATAGGAGGACAAGAAGAAAGACACGTGATA
TTATATTATCTATGCGGTTCAAGTAATTAGTACGCAGTATAAACACAAGT
AGTAATATAATAATTACAGGGTGGTTCAAAGTTAGGTGCATTCAGATTTT
TCTTTTAAACACCGTATTGATACTATAAATAAAACAGGGAACTGGACAGG
ACAGGACAGGAGTAACTACTAATTAATGCTCGTTGTCACTATCAATAATA
ATAATAATAATACTACTACAAAGCACTTGTACAGTACACTATTAATAGTA
CAGTACACAGTAAGTAGTAAGTAGTAATGCTATTTTTTTTGTCGTCGCTT
TCCGCAGACTGGGGCCCACATAAACCGGGTACAGTATTGTTGCTGCCAAT
CCTCCTCGTGGTCAGCTAAACAAAGAAAATCAATTATACCTATGAGTGAG
TGCCTATTCCCGTTCGTACCTGAGAATTTGGCCTTGCGAAAGGGGTCCGT
CTGCATCATCAGCACACGAGAGCCTAGCTGTTATGTTTTTAGAAAAATCT
GAACGCACCTAATCCTTAGGAATCCACACCGTCCAGGGGACATTAGTTTT
GTCAAAACCTTTATAATATTTAATAGTAGGTGGGGACATTGGCTTAGGAT
CGGTCTAAAGGAGGAAATATGTATGATCCTCGTTCCAAACTTTTCCAGAA
TTTTCCAAACATGAAATAAAAGCCTCTGCGGGAACCTCGTCTAAAATTTG
GAAAAGTTTGGAAACGTTTCGGCTCACATCCGGATGAGCAAACTCCGCGG
CCGCGGTCCTCAACGCACACTCAATGGTTTCGGCCGCGACACATTTCAGA
CTCATTTATTTGCGCATGGCTATAAGAAGAGCTCCAAGAACATCGTTATC
TTATTTGTCAATTGAGAACTCAGCTCAGACCAAAAAGGTAGGGTCTCTTT
AAGTGAATGTCTTTCATTCCTTTGTCTACTTGTAATCCTTACTATAACAC
AGTAATACTTTGCATCCCCATTCCTGCATAAAACCAAACCGATGCCAACT
AAATACCAGGTACCTTGTACTTATTTTCTTTTAAGCTTTGCTACACTTCA
CAGGTCATTGCTTGACAAGCGATCGATCGGTAACCTCCTAGCTCCGTTTT
GCCCCAGGACCAAACAATAACACCGTCACCGACAGAAATCAGCCCAAACC
CTCGCCCTCGCGCTCTAGAACCTCAAGCTGTGTCAAATCTTCCTCCGTCA
TGTGTAACTCTACAATGAATAAAAAGTATTCGTGTCTGCAGCGTTCAAAG
TGCAATTTCAATCCACACGTGTTCAGACTTGGCCAGAAACCATCACAAAG
AGCAATGTCCATCCTGTAAGGGCCGTACAAGCTCGCCTGCAGAAACCACT
AGGGTTTATGTTATCGTGTCTGGAACCATTCTTCTGTAACTGTGAAGTTC
TAAGTGGGTGGCGTTAGTGCACGGATTCATCTAGTGCGTAGGCCGCTTCA
CCTAACTGCCTGTCGTAAATATTTGGAAAGTGTTTTGCTGAACTCGATAC
GTAGTCACCATGATGGCTGATCGCCAGCTTTCAACAGGACGAGATCGTTT
CTCAGGGGCATATCATGTCCTTAGCCTCGAGGCCCCTGAGCGTGACGTTT
ATGCCGTCCTTCACAAAACTCGTTAAATTTCGTCCATGTCTTGCTGATCT
CTTAACTTTTCGCATGTGCCGTGTCGTTTCTCCGGGGCCTCGCATATCGT
GGGTTGTGTAACAGTTGCGTATGACGATAAATGCTTTGGTTGTGTTACTT
GTTTGGATAAGTGGGCATGGTTTTCGACAGATTCAGCTAGCGCG
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Coding sequence (CDS) from alignment at A-nodosum_M_contig1263:179488..183881+

>mRNA_A-nodosum_M_contig1263.17.1 ID=mRNA_A-nodosum_M_contig1263.17.1|Name=mRNA_A-nodosum_M_contig1263.17.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=261bp|location=Sequence derived from alignment at A-nodosum_M_contig1263:179488..183881+ (Ascophyllum nodosum dioecious)
ATGAAGAGATGGCTCTCACGAAGGGAGATGTCGCGCAGCAGAGTTAAGGG
CGGCCGTGACGAAGGAACAACTGAAACTGCTTGGGCATGCGCAGTCTGCT
CTCGTACGAGAACCGCCGCCGTAGGTGGCGCACAGATGCGTTTTCTGGAT
GATTGTGGAACAAGTCATGAGCCTTCGTTCTTCATTCTTCATTCTCGTTC
AACGGTGATGCACGCGTTTTGGACACAAACAATATCTTTCTCCATTCTCC
TTCAACGGTGA
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