mRNA_A-nodosum_M_contig1262.3.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig1262.3.1
Unique NamemRNA_A-nodosum_M_contig1262.3.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
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BLAST of mRNA_A-nodosum_M_contig1262.3.1 vs. uniprot
Match: A0A6H5K463_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K463_9PHAE)

HSP 1 Score: 174 bits (440), Expect = 1.260e-46
Identity = 111/247 (44.94%), Postives = 137/247 (55.47%), Query Frame = 1 
Query:    1 PGLELSFNVGVTLNLVRRTAYGELGPEDHGLGFRRCRITAAGLRTGGVRDPSDGWGTPPPQHRGWLSMVSLTAGAPPFSL-PGEVV------TAAGSGQP------------------SAATGQQARTVTQNENTSSIT------DGAMYSQTPCPWLMCRAASDVATPAA-----------------YVMDDGXXXGAQEKFLEMKVAGRAGGPSGTGSCASLVISVGKVEAWALGGAAWRWLDRL 597
            PGLE+SF+ GVT+NLVRR A GE+GP   GL  +RCR++A GL  GGVR+PSDGWG+PPPQHRGWLS+ SLT G PP  L P  VV      T A  G                    S AT     T  Q    +S        +G    Q   PWL+CR A+  A PAA                 + + +    G  + FLE+KVAGRAG  +GTGSCASL++ +G+VE WALGGAA RW++RL
Sbjct:  135 PGLEVSFSAGVTVNLVRRNARGEVGPGHLGLWLQRCRVSATGLHAGGVREPSDGWGSPPPQHRGWLSVSSLTVGTPPSPLTPSGVVGSRFAETVAAGGXXXXXXXXXXXXXXXXXXSGSRATNNMGGTGHQFFRPASAAAPAIAENGKSGQQHYRPWLVCRPAAVAAAPAAPGRSGGSKVSGGGSRASHRLGNDPLGGKYDNFLEVKVAGRAGSAAGTGSCASLLMRMGEVEGWALGGAATRWVERL 381
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1262.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5K463_9PHAE1.260e-4644.94Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig1262contigA-nodosum_M_contig1262:71458..72055 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size598
Hectar predicted targeting categoryother localisation
Exons1
Cds size597
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866699.1674082-CDS-A-nodosum_M_contig1262:71458..720551680866699.1674082-CDS-A-nodosum_M_contig1262:71458..72055Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1262 71459..72055 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig1262.3.1prot_A-nodosum_M_contig1262.3.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig1262 71459..72055 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig1262.3.1

>prot_A-nodosum_M_contig1262.3.1 ID=prot_A-nodosum_M_contig1262.3.1|Name=mRNA_A-nodosum_M_contig1262.3.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=199bp
PGLELSFNVGVTLNLVRRTAYGELGPEDHGLGFRRCRITAAGLRTGGVRD
PSDGWGTPPPQHRGWLSMVSLTAGAPPFSLPGEVVTAAGSGQPSAATGQQ
ARTVTQNENTSSITDGAMYSQTPCPWLMCRAASDVATPAAYVMDDGGGGG
AQEKFLEMKVAGRAGGPSGTGSCASLVISVGKVEAWALGGAAWRWLDRL
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mRNA from alignment at A-nodosum_M_contig1262:71458..72055-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig1262.3.1 ID=mRNA_A-nodosum_M_contig1262.3.1|Name=mRNA_A-nodosum_M_contig1262.3.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=598bp|location=Sequence derived from alignment at A-nodosum_M_contig1262:71458..72055- (Ascophyllum nodosum dioecious)
CCGGGCCTCGAGCTCAGCTTCAATGTGGGCGTGACACTCAACCTCGTTCG
CCGCACCGCTTACGGGGAGCTGGGGCCAGAGGATCACGGCCTCGGGTTCC
GGCGGTGCCGAATCACGGCCGCTGGTTTGCGTACCGGAGGCGTTCGCGAT
CCGTCGGACGGGTGGGGAACGCCCCCGCCCCAGCACCGCGGCTGGCTTTC
GATGGTGTCCCTGACCGCGGGAGCTCCGCCGTTCTCGCTCCCCGGAGAGG
TTGTTACCGCAGCCGGGAGTGGCCAACCCTCGGCCGCGACGGGACAACAA
GCGCGCACTGTGACCCAAAACGAAAACACCAGCAGTATCACGGATGGCGC
GATGTACTCTCAGACGCCGTGCCCATGGCTCATGTGTAGGGCGGCGTCCG
ATGTTGCAACCCCGGCGGCTTATGTGATGGATGACGGCGGCGGTGGCGGC
GCGCAGGAGAAATTTTTGGAGATGAAGGTGGCGGGTCGCGCGGGGGGCCC
TTCCGGAACGGGAAGCTGCGCTTCTCTCGTGATAAGCGTGGGAAAGGTGG
AGGCGTGGGCGCTGGGCGGCGCGGCGTGGAGATGGCTGGATAGGCTCG
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Coding sequence (CDS) from alignment at A-nodosum_M_contig1262:71458..72055-

>mRNA_A-nodosum_M_contig1262.3.1 ID=mRNA_A-nodosum_M_contig1262.3.1|Name=mRNA_A-nodosum_M_contig1262.3.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=597bp|location=Sequence derived from alignment at A-nodosum_M_contig1262:71458..72055- (Ascophyllum nodosum dioecious)
CCGGGCCTCGAGCTCAGCTTCAATGTGGGCGTGACACTCAACCTCGTTCG
CCGCACCGCTTACGGGGAGCTGGGGCCAGAGGATCACGGCCTCGGGTTCC
GGCGGTGCCGAATCACGGCCGCTGGTTTGCGTACCGGAGGCGTTCGCGAT
CCGTCGGACGGGTGGGGAACGCCCCCGCCCCAGCACCGCGGCTGGCTTTC
GATGGTGTCCCTGACCGCGGGAGCTCCGCCGTTCTCGCTCCCCGGAGAGG
TTGTTACCGCAGCCGGGAGTGGCCAACCCTCGGCCGCGACGGGACAACAA
GCGCGCACTGTGACCCAAAACGAAAACACCAGCAGTATCACGGATGGCGC
GATGTACTCTCAGACGCCGTGCCCATGGCTCATGTGTAGGGCGGCGTCCG
ATGTTGCAACCCCGGCGGCTTATGTGATGGATGACGGCGGCGGTGGCGGC
GCGCAGGAGAAATTTTTGGAGATGAAGGTGGCGGGTCGCGCGGGGGGCCC
TTCCGGAACGGGAAGCTGCGCTTCTCTCGTGATAAGCGTGGGAAAGGTGG
AGGCGTGGGCGCTGGGCGGCGCGGCGTGGAGATGGCTGGATAGGCTC
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