mRNA_A-nodosum_M_contig1261.40.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig1261.40.1
Unique NamemRNA_A-nodosum_M_contig1261.40.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
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BLAST of mRNA_A-nodosum_M_contig1261.40.1 vs. uniprot
Match: A0A6H5JPB9_9PHAE (ABC1 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JPB9_9PHAE)

HSP 1 Score: 85.5 bits (210), Expect = 4.010e-18
Identity = 40/54 (74.07%), Postives = 48/54 (88.89%), Query Frame = 1 
Query:    1 LTGDESRSMMDAHVKARLVVGEPFVNKR-EPFDFHGSNITSRLSQHGDTFMKHR 159
            LTGDE++ MM AH++A LVVGEPF+++  E FDFHGSNIT+RLSQHGDTFMKHR
Sbjct:  585 LTGDETQMMMKAHLQAGLVVGEPFIDRDGEAFDFHGSNITARLSQHGDTFMKHR 638
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BLAST of mRNA_A-nodosum_M_contig1261.40.1 vs. uniprot
Match: A0A4D9DI78_9STRA (ABC1 domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9DI78_9STRA)

HSP 1 Score: 79.0 bits (193), Expect = 8.020e-16
Identity = 38/53 (71.70%), Postives = 41/53 (77.36%), Query Frame = 1 
Query:    1 LTGDESRSMMDAHVKARLVVGEPFVNKREPFDFHGSNITSRLSQHGDTFMKHR 159
            LTGDES  M+ AH  A LVVGEPFVN  EPFDFHGSN+T R+S HG TFM HR
Sbjct:  527 LTGDESTQMLRAHESAGLVVGEPFVN-HEPFDFHGSNMTVRISHHGKTFMNHR 578
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BLAST of mRNA_A-nodosum_M_contig1261.40.1 vs. uniprot
Match: A0A7S1XJ41_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XJ41_9STRA)

HSP 1 Score: 71.2 bits (173), Expect = 1.380e-13
Identity = 32/53 (60.38%), Postives = 42/53 (79.25%), Query Frame = 1 
Query:    1 LTGDESRSMMDAHVKARLVVGEPFVNKREPFDFHGSNITSRLSQHGDTFMKHR 159
            LTGDES +M++AH+ A LVVGEPF   + PFDFHGS IT+R++ + +TF KHR
Sbjct:  129 LTGDESPAMIEAHINAGLVVGEPFFTSK-PFDFHGSGITARIAAYSETFAKHR 180
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BLAST of mRNA_A-nodosum_M_contig1261.40.1 vs. uniprot
Match: A0A1V9ZC44_9STRA (ABC1 domain-containing protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZC44_9STRA)

HSP 1 Score: 70.1 bits (170), Expect = 1.050e-12
Identity = 33/53 (62.26%), Postives = 41/53 (77.36%), Query Frame = 1 
Query:    1 LTGDESRSMMDAHVKARLVVGEPFVNKREPFDFHGSNITSRLSQHGDTFMKHR 159
            LTGDES+ M+ AH +A +VVGEPF +  EP+DFH S++T RLSQH D FMK R
Sbjct:  520 LTGDESKDMLRAHEQAGMVVGEPFAS-HEPYDFHNSHLTQRLSQHTDMFMKGR 571
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BLAST of mRNA_A-nodosum_M_contig1261.40.1 vs. uniprot
Match: A0A1Z5K2R3_FISSO (AarF domain-containing kinase n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5K2R3_FISSO)

HSP 1 Score: 68.2 bits (165), Expect = 5.000e-12
Identity = 33/53 (62.26%), Postives = 40/53 (75.47%), Query Frame = 1 
Query:    1 LTGDESRSMMDAHVKARLVVGEPFVNKREPFDFHGSNITSRLSQHGDTFMKHR 159
            LTGDE+ +M+DAH+ +   VGEPF +  EPFDF GSNI+SRLS H   FMKHR
Sbjct:  488 LTGDENETMIDAHIMSGYTVGEPFWSD-EPFDFRGSNISSRLSGHMAVFMKHR 539
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BLAST of mRNA_A-nodosum_M_contig1261.40.1 vs. uniprot
Match: A0A329T3W1_9STRA (Protein ABC transporter 1 n=12 Tax=Phytophthora TaxID=4783 RepID=A0A329T3W1_9STRA)

HSP 1 Score: 64.7 bits (156), Expect = 8.320e-11
Identity = 33/53 (62.26%), Postives = 37/53 (69.81%), Query Frame = 1 
Query:    1 LTGDESRSMMDAHVKARLVVGEPFVNKREPFDFHGSNITSRLSQHGDTFMKHR 159
            LTGDES SMM AHV A +VVGEPF    EPFDF  S +T+RL QH + FM  R
Sbjct:  487 LTGDESPSMMRAHVAAGMVVGEPF-RSHEPFDFQKSKLTTRLGQHTEVFMHGR 538
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BLAST of mRNA_A-nodosum_M_contig1261.40.1 vs. uniprot
Match: A0A8J5J500_9STRA (ABC1 domain-containing protein n=1 Tax=Phytophthora aleatoria TaxID=2496075 RepID=A0A8J5J500_9STRA)

HSP 1 Score: 64.7 bits (156), Expect = 8.360e-11
Identity = 33/53 (62.26%), Postives = 37/53 (69.81%), Query Frame = 1 
Query:    1 LTGDESRSMMDAHVKARLVVGEPFVNKREPFDFHGSNITSRLSQHGDTFMKHR 159
            LTGDES SMM AHV A +VVGEPF    EPFDF  S +T+RL QH + FM  R
Sbjct:  487 LTGDESPSMMRAHVAAGMVVGEPF-RSHEPFDFQKSKLTTRLGQHTEVFMHGR 538
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BLAST of mRNA_A-nodosum_M_contig1261.40.1 vs. uniprot
Match: A0A024GRQ5_9STRA (ABC1 domain-containing protein n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024GRQ5_9STRA)

HSP 1 Score: 64.3 bits (155), Expect = 1.140e-10
Identity = 30/53 (56.60%), Postives = 42/53 (79.25%), Query Frame = 1 
Query:    1 LTGDESRSMMDAHVKARLVVGEPFVNKREPFDFHGSNITSRLSQHGDTFMKHR 159
            LTGDES++M+ AHV A +VVGEPF++ + PFDF  S++T RL+QH +TF+  R
Sbjct:  558 LTGDESQTMLQAHVAAGMVVGEPFLSSK-PFDFSQSHLTKRLAQHTETFVHGR 609
[Close]
BLAST of mRNA_A-nodosum_M_contig1261.40.1 vs. uniprot
Match: F0X0F2_9STRA (Uncharacterized protein AlNc14C481G11893 n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0X0F2_9STRA)

HSP 1 Score: 64.3 bits (155), Expect = 1.140e-10
Identity = 30/53 (56.60%), Postives = 42/53 (79.25%), Query Frame = 1 
Query:    1 LTGDESRSMMDAHVKARLVVGEPFVNKREPFDFHGSNITSRLSQHGDTFMKHR 159
            LTGDES++M+ AHV A +VVGEPF++ + PFDF  S++T RL+QH +TF+  R
Sbjct:  581 LTGDESQTMLQAHVAAGMVVGEPFLSSK-PFDFSQSHLTKRLAQHTETFVHGR 632
[Close]
BLAST of mRNA_A-nodosum_M_contig1261.40.1 vs. uniprot
Match: A0A7S4T2B6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4T2B6_9STRA)

HSP 1 Score: 61.2 bits (147), Expect = 1.340e-10
Identity = 29/53 (54.72%), Postives = 38/53 (71.70%), Query Frame = 1 
Query:    1 LTGDESRSMMDAHVKARLVVGEPFVNKREPFDFHGSNITSRLSQHGDTFMKHR 159
            LTG+E+  MM+AH  +   +GEPF +  EPFDF GS IT RLS+HG  F++HR
Sbjct:    2 LTGEENDIMMEAHKMSGYTLGEPFASD-EPFDFRGSFITKRLSEHGAPFLQHR 53
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1261.40.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JPB9_9PHAE4.010e-1874.07ABC1 domain-containing protein n=2 Tax=Ectocarpus ... [more]
A0A4D9DI78_9STRA8.020e-1671.70ABC1 domain-containing protein n=2 Tax=Monodopsida... [more]
A0A7S1XJ41_9STRA1.380e-1360.38Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A1V9ZC44_9STRA1.050e-1262.26ABC1 domain-containing protein n=1 Tax=Thraustothe... [more]
A0A1Z5K2R3_FISSO5.000e-1262.26AarF domain-containing kinase n=2 Tax=Fistulifera ... [more]
A0A329T3W1_9STRA8.320e-1162.26Protein ABC transporter 1 n=12 Tax=Phytophthora Ta... [more]
A0A8J5J500_9STRA8.360e-1162.26ABC1 domain-containing protein n=1 Tax=Phytophthor... [more]
A0A024GRQ5_9STRA1.140e-1056.60ABC1 domain-containing protein n=1 Tax=Albugo cand... [more]
F0X0F2_9STRA1.140e-1056.60Uncharacterized protein AlNc14C481G11893 n=1 Tax=A... [more]
A0A7S4T2B6_9STRA1.340e-1054.72Hypothetical protein (Fragment) n=1 Tax=Ditylum br... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig1261contigA-nodosum_M_contig1261:223523..223967 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LRI9
Preferred nameADCK3
PFAMsABC1
Model size162
Max annot lvl2759|Eukaryota
KEGG koko:K08869
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000166,GO:0001655,GO:0001822,GO:0002064,GO:0003674,GO:0003824,GO:0004672,GO:0005215,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005759,GO:0006091,GO:0006119,GO:0006122,GO:0006139,GO:0006163,GO:0006464,GO:0006468,GO:0006725,GO:0006732,GO:0006733,GO:0006743,GO:0006744,GO:0006753,GO:0006778,GO:0006787,GO:0006793,GO:0006796,GO:0006807,GO:0007275,GO:0007399,GO:0007417,GO:0007420,GO:0008150,GO:0008152,GO:0008289,GO:0009056,GO:0009058,GO:0009108,GO:0009117,GO:0009123,GO:0009126,GO:0009141,GO:0009144,GO:0009150,GO:0009161,GO:0009167,GO:0009199,GO:0009205,GO:0009259,GO:0009314,GO:0009411,GO:0009416,GO:0009628,GO:0009653,GO:0009888,GO:0009987,GO:0010224,GO:0015980,GO:0015994,GO:0015996,GO:0016020,GO:0016043,GO:0016301,GO:0016310,GO:0016462,GO:0016740,GO:0016772,GO:0016773,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017076,GO:0017111,GO:0017144,GO:0019439,GO:0019538,GO:0019637,GO:0019693,GO:0019866,GO:0019898,GO:0021549,GO:0021575,GO:0021587,GO:0021680,GO:0021692,GO:0021695,GO:0021696,GO:0022037,GO:0022900,GO:0022904,GO:0030154,GO:0030198,GO:0030554,GO:0030855,GO:0030902,GO:0031090,GO:0031312,GO:0031314,GO:0031966,GO:0031967,GO:0031974,GO:0031975,GO:0032194,GO:0032501,GO:0032502,GO:0032553,GO:0032555,GO:0032559,GO:0032835,GO:0032836,GO:0033013,GO:0033015,GO:0034641,GO:0035850,GO:0036094,GO:0036211,GO:0042180,GO:0042181,GO:0042440,GO:0042773,GO:0042775,GO:0043062,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0043531,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044267,GO:0044270,GO:0044281,GO:0044283,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044444,GO:0044446,GO:0044455,GO:0044464,GO:0045333,GO:0046034,GO:0046149,GO:0046483,GO:0046700,GO:0046777,GO:0048468,GO:0048513,GO:0048731,GO:0048856,GO:0048869,GO:0050896,GO:0051186,GO:0051187,GO:0051188,GO:0055086,GO:0055114,GO:0060322,GO:0060429,GO:0061005,GO:0061318,GO:0070013,GO:0071704,GO:0071840,GO:0072001,GO:0072006,GO:0072009,GO:0072010,GO:0072015,GO:0072073,GO:0072112,GO:0072310,GO:0072311,GO:0072521,GO:0097159,GO:0097367,GO:0140096,GO:1901004,GO:1901006,GO:1901135,GO:1901265,GO:1901360,GO:1901361,GO:1901363,GO:1901564,GO:1901565,GO:1901575,GO:1901576,GO:1901661,GO:1901663
Exons2
Evalue2.86e-15
EggNOG OGsCOG0661@1|root,KOG1234@2759|Eukaryota
Descriptionubiquinone biosynthetic process
Cds size138
COG categoryZ
BRITEko00000,ko01001
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866698.2532265-CDS-A-nodosum_M_contig1261:223522..2236041680866698.2532265-CDS-A-nodosum_M_contig1261:223522..223604Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1261 223523..223604 -
1680866698.266882-CDS-A-nodosum_M_contig1261:223887..2239431680866698.266882-CDS-A-nodosum_M_contig1261:223887..223943Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1261 223888..223943 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866698.2751756-UTR-A-nodosum_M_contig1261:223943..2239671680866698.2751756-UTR-A-nodosum_M_contig1261:223943..223967Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig1261 223944..223967 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig1261.40.1prot_A-nodosum_M_contig1261.40.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig1261 223523..223943 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig1261.40.1

>prot_A-nodosum_M_contig1261.40.1 ID=prot_A-nodosum_M_contig1261.40.1|Name=mRNA_A-nodosum_M_contig1261.40.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=46bp
MMDAHVKARLVVGEPFVNKREPFDFHGSNITSRLSQHGDTFMKHR*
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mRNA from alignment at A-nodosum_M_contig1261:223523..223967-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig1261.40.1 ID=mRNA_A-nodosum_M_contig1261.40.1|Name=mRNA_A-nodosum_M_contig1261.40.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=445bp|location=Sequence derived from alignment at A-nodosum_M_contig1261:223523..223967- (Ascophyllum nodosum dioecious)
TTGACTGGAGACGAATCCCGATCGATGATGGACGCGCACGTCAAAGCCCG
TCTCGTCGTCGGAGAGCCCTTCGTAAACAAGCGGGTGCCCCCTTGATACC
CTTGATGAAGAATCAAAGTGTCTTGTGAATTATTTAACAACGGCGGACAG
GATAGAGAAGAAAATAAATGCCGCTATTAAAGTTTGCCACGCTGATGGCG
TGTATTCCTATCATGCTTTGCAGCTGGACGGTCCGTCATTTTCCATCTCC
TCGAAAAGATCGCATTTGCAATGCTTTCCAATATATGTATTTTTTTTTCA
TGCCTAGAATCGTGATCATCAAAGCGCAACTTCCTCGTGTCCTTCTGTAA
TAACGCGCAGCAGACGAGAGCCGTTCGACTTCCATGGCAGTAACATCACC
TCCAGACTAAGCCAACATGGAGACACGTTCATGAAGCACAGGTGA
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Coding sequence (CDS) from alignment at A-nodosum_M_contig1261:223523..223967-

>mRNA_A-nodosum_M_contig1261.40.1 ID=mRNA_A-nodosum_M_contig1261.40.1|Name=mRNA_A-nodosum_M_contig1261.40.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=138bp|location=Sequence derived from alignment at A-nodosum_M_contig1261:223523..223967- (Ascophyllum nodosum dioecious)
ATGATGGACGCGCACGTCAAAGCCCGTCTCGTCGTCGGAGAGCCCTTCGT
AAACAAACGAGAGCCGTTCGACTTCCATGGCAGTAACATCACCTCCAGAC
TAAGCCAACATGGAGACACGTTCATGAAGCACAGGTGA
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