mRNA_A-nodosum_M_contig1261.36.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig1261.36.1
Unique NamemRNA_A-nodosum_M_contig1261.36.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
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BLAST of mRNA_A-nodosum_M_contig1261.36.1 vs. uniprot
Match: D8LRI8_ECTSI (CRAL-TRIO domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRI8_ECTSI)

HSP 1 Score: 99.4 bits (246), Expect = 5.180e-21
Identity = 43/77 (55.84%), Postives = 58/77 (75.32%), Query Frame = 3 
Query:    3 ILHVNRALSVALSTASGFMSAKMKARLEIVPSDKAADGSFTRNLAEPSNVPKELAIGGTWTGSLDYWDSWVADRVSK 233
            ILH+NR + +AL  A   +SAKM+AR+E V  ++A+DGSFT+ LA+PS++P EL I GTWTGS D+WD WV  RV +
Sbjct:  755 ILHLNRVIGMALKIAMPLLSAKMRARVEFVTDERASDGSFTKELADPSSIPVELGIKGTWTGSRDFWDEWVVRRVDE 831
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BLAST of mRNA_A-nodosum_M_contig1261.36.1 vs. uniprot
Match: A0A6H5JJW0_9PHAE (CRAL-TRIO domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJW0_9PHAE)

HSP 1 Score: 94.4 bits (233), Expect = 2.880e-19
Identity = 44/80 (55.00%), Postives = 59/80 (73.75%), Query Frame = 3 
Query:    3 ILHVNRALSVALSTASGFMSAKMKAR---LEIVPSDKAADGSFTRNLAEPSNVPKELAIGGTWTGSLDYWDSWVADRVSK 233
            ILH+NR +  ALS A   +SAKM+AR   +E V  ++A+DGSFT+ LA+PS++P EL I GTWTGS D+WD WV  RV++
Sbjct:  790 ILHLNRVIRFALSIAMPLLSAKMRARQCKVEFVTDERASDGSFTKELADPSSIPVELGIKGTWTGSHDFWDEWVGRRVAE 869
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1261.36.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LRI8_ECTSI5.180e-2155.84CRAL-TRIO domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5JJW0_9PHAE2.880e-1955.00CRAL-TRIO domain-containing protein n=1 Tax=Ectoca... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig1261contigA-nodosum_M_contig1261:220234..221505 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LRI8
PFAMsCRAL_TRIO,VIT,VWA
Model size526
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons2
Evalue4.77e-19
EggNOG OGsKOG1471@1|root,KOG1471@2759|Eukaryota
Descriptionmacromolecule localization
Cds size183
COG categoryS
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866697.9848452-UTR-A-nodosum_M_contig1261:220233..2202891680866697.9848452-UTR-A-nodosum_M_contig1261:220233..220289Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig1261 220234..220289 +
1680866698.0229325-UTR-A-nodosum_M_contig1261:221218..2215051680866698.0229325-UTR-A-nodosum_M_contig1261:221218..221505Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig1261 221219..221505 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866697.9972959-CDS-A-nodosum_M_contig1261:220289..2203121680866697.9972959-CDS-A-nodosum_M_contig1261:220289..220312Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1261 220290..220312 +
1680866698.0063014-CDS-A-nodosum_M_contig1261:221058..2212181680866698.0063014-CDS-A-nodosum_M_contig1261:221058..221218Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1261 221059..221218 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig1261.36.1prot_A-nodosum_M_contig1261.36.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig1261 220290..221218 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig1261.36.1

>prot_A-nodosum_M_contig1261.36.1 ID=prot_A-nodosum_M_contig1261.36.1|Name=mRNA_A-nodosum_M_contig1261.36.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=61bp
MSAKMKARLEIVPSDKAADGSFTRNLAEPSNVPKELAIGGTWTGSLDYWD
SWVADRVSKT*
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mRNA from alignment at A-nodosum_M_contig1261:220234..221505+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig1261.36.1 ID=mRNA_A-nodosum_M_contig1261.36.1|Name=mRNA_A-nodosum_M_contig1261.36.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=1272bp|location=Sequence derived from alignment at A-nodosum_M_contig1261:220234..221505+ (Ascophyllum nodosum dioecious)
GTATTCTGCACGTCAACCGTGCGCTCTCTGTCGCACTTTCTACTGCGTCG
GGGTTCATGTCGGCCAAGATGAAAGCAAGGCGAGCCACTGCCATTGCGGT
CCATATATCATCTCGTGTTCCTGCCGCTTTGAGGCGTTCACCAAAACCCT
ACCAAATACTGTCTGTAGTTTTGTTGTTTCCTCCCCACTATAGTCCCGTA
CACTCCTTTATGATCGTGTACATTTTAGCCCGCGAAACGCATCTTTCTGC
GATCCTTTTTTTGTGTGTGTGTTGTGTGTTCACTTTCTTAGCACATGATT
GCAATTGTGGATGGTTGGATGGTGTTTACTAGTAATATTAATATACAGTA
CTAGTAATACCAGTTATCAGTTATgtataGTATAGTATTAATGGGTACTA
AATATTAATAGCATTTGAAGAGCGATGGCTTCGAGACAGAAAATGGATGG
AAATGGAAAGGATGTGTCAACGCGTGGAGAGGTCCGAACTCGTAGTATGA
ATACAAGACGTCGCCGCGGTAATCGGGAGGAATCCCGTGAGTAAGCACCA
GATTAAGCCCAAGTGTGGAGGAGGAGCAGGCTGACGCGGGACGGGATGGC
CGAACCCGTCTCGCGACTCCAAATTCTCAGACACAAACTGTGACAGGGAA
ATAATCATTTTTACTTGTTCAGCTGACCACGAGCAGGATTGGCAACCTTA
CCCGGTTGATCTGTTCTCTGCAAGAGCTATATGTGATGACTATACATACA
TACAGTACTGTATGATGACCACTGTATGGTTAACATGTTTGATTATGACG
ATACTGTTATGCCTTTTTCTAGCAGGTTGGAGATTGTGCCAAGCGATAAG
GCGGCCGATGGCAGCTTTACCAGGAATTTGGCGGAACCCTCGAACGTGCC
GAAAGAACTGGCGATTGGGGGAACATGGACAGGCTCGCTAGATTACTGGG
ACAGTTGGGTCGCCGATAGAGTATCGAAGACTTGAGATAGTTGGGTCAAA
AGCGGTGGTATTTCAATTTTTCAAGATTTTGGATTCGAAAGTGGGATGAT
TTTGTAGGGCGCGTATGATTATGGGCGCTGTTGATCGTTGACGAGGGAGC
TGTTTCCGCGGCAGTCCGCATGCCGGATATAAGAGTATGCACCGGTTAAA
GTTTTGTGAAAGCTCTTGACAGTTTTAACCCGGATGTTCCACGTTTCCTC
GTGTTAGATTTCTTTCGACGTTTTTGTTGTCTTTGCAGTCTGTTATCTCA
TTTAAACGTTTTGACTATCCCC
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Coding sequence (CDS) from alignment at A-nodosum_M_contig1261:220234..221505+

>mRNA_A-nodosum_M_contig1261.36.1 ID=mRNA_A-nodosum_M_contig1261.36.1|Name=mRNA_A-nodosum_M_contig1261.36.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=183bp|location=Sequence derived from alignment at A-nodosum_M_contig1261:220234..221505+ (Ascophyllum nodosum dioecious)
ATGTCGGCCAAGATGAAAGCAAGGTTGGAGATTGTGCCAAGCGATAAGGC
GGCCGATGGCAGCTTTACCAGGAATTTGGCGGAACCCTCGAACGTGCCGA
AAGAACTGGCGATTGGGGGAACATGGACAGGCTCGCTAGATTACTGGGAC
AGTTGGGTCGCCGATAGAGTATCGAAGACTTGA
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