mRNA_A-nodosum_M_contig1259.6.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig1259.6.1
Unique NamemRNA_A-nodosum_M_contig1259.6.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
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BLAST of mRNA_A-nodosum_M_contig1259.6.1 vs. uniprot
Match: A0A6H5L326_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L326_9PHAE)

HSP 1 Score: 72.4 bits (176), Expect = 9.060e-14
Identity = 29/53 (54.72%), Postives = 36/53 (67.92%), Query Frame = 3 
Query:   15 MLCAAGVRCKLPRQTPGPPFYIIHKCRK-CRGYLHGVCGEKDPIEDDDCKHVC 170
            M CAAG RC +P +TPGPP + IHKCR  CR YLHG+CG  DP+   +   +C
Sbjct:    1 MPCAAGDRCTMPDETPGPPHFTIHKCRGVCRQYLHGICGVVDPLGTTEVHRIC 53
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1259.6.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5L326_9PHAE9.060e-1454.72Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig1259contigA-nodosum_M_contig1259:81303..81614 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size312
Hectar predicted targeting categoryother localisation
Exons1
Cds size207
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866691.4406862-UTR-A-nodosum_M_contig1259:81302..813161680866691.4406862-UTR-A-nodosum_M_contig1259:81302..81316Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig1259 81303..81316 +
1680866691.5839844-UTR-A-nodosum_M_contig1259:81523..816141680866691.5839844-UTR-A-nodosum_M_contig1259:81523..81614Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig1259 81524..81614 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866691.5713127-CDS-A-nodosum_M_contig1259:81316..815231680866691.5713127-CDS-A-nodosum_M_contig1259:81316..81523Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1259 81317..81523 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig1259.6.1prot_A-nodosum_M_contig1259.6.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig1259 81317..81523 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig1259.6.1

>prot_A-nodosum_M_contig1259.6.1 ID=prot_A-nodosum_M_contig1259.6.1|Name=mRNA_A-nodosum_M_contig1259.6.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=69bp
MLCAAGVRCKLPRQTPGPPFYIIHKCRKCRGYLHGVCGEKDPIEDDDCKH
VCEGRILRPTATKRRNRM*
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mRNA from alignment at A-nodosum_M_contig1259:81303..81614+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig1259.6.1 ID=mRNA_A-nodosum_M_contig1259.6.1|Name=mRNA_A-nodosum_M_contig1259.6.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=312bp|location=Sequence derived from alignment at A-nodosum_M_contig1259:81303..81614+ (Ascophyllum nodosum dioecious)
AGAGACTCGAATCCATGCTGTGTGCAGCGGGCGTGCGCTGTAAGCTACCG
AGGCAGACACCAGGGCCACCCTTCTACATAATCCACAAATGCCGCAAATG
TCGTGGGTATCTCCACGGGGTTTGCGGAGAGAAGGACCCCATCGAAGACG
ATGATTGCAAACATGTGTGTGAGGGGCGTATATTGCGGCCGACAGCAACA
AAAAGGCGAAACCGAATGTGACATTCGTAGCTTTTCGATACGTAGAGTTT
GGAGTAGGCCACAGTCTACATCGTGCTGCTGAAGACATGCTTTTGAGACA
GAAAATGTGAAC
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Coding sequence (CDS) from alignment at A-nodosum_M_contig1259:81303..81614+

>mRNA_A-nodosum_M_contig1259.6.1 ID=mRNA_A-nodosum_M_contig1259.6.1|Name=mRNA_A-nodosum_M_contig1259.6.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=207bp|location=Sequence derived from alignment at A-nodosum_M_contig1259:81303..81614+ (Ascophyllum nodosum dioecious)
ATGCTGTGTGCAGCGGGCGTGCGCTGTAAGCTACCGAGGCAGACACCAGG
GCCACCCTTCTACATAATCCACAAATGCCGCAAATGTCGTGGGTATCTCC
ACGGGGTTTGCGGAGAGAAGGACCCCATCGAAGACGATGATTGCAAACAT
GTGTGTGAGGGGCGTATATTGCGGCCGACAGCAACAAAAAGGCGAAACCG
AATGTGA
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