mRNA_A-nodosum_M_contig1258.16.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig1258.16.1
Unique NamemRNA_A-nodosum_M_contig1258.16.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1258.16.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig1258contigA-nodosum_M_contig1258:218980..219574 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size287
Hectar predicted targeting categorysignal peptide
Exons2
Cds size285
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866689.407445-CDS-A-nodosum_M_contig1258:218979..2192121680866689.407445-CDS-A-nodosum_M_contig1258:218979..219212Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1258 218980..219212 -
1680866689.4200747-CDS-A-nodosum_M_contig1258:219522..2195741680866689.4200747-CDS-A-nodosum_M_contig1258:219522..219574Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1258 219523..219574 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig1258.16.1prot_A-nodosum_M_contig1258.16.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig1258 218980..219574 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig1258.16.1

>prot_A-nodosum_M_contig1258.16.1 ID=prot_A-nodosum_M_contig1258.16.1|Name=mRNA_A-nodosum_M_contig1258.16.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=95bp
EILLSFTYCRWVTQAQPVRCPSDNSVRIGRTDTSREKNPTQRMHTACRIV
TRGSCCTQELFAEFDGNNCESCRSLEQLVTPLCAAHRGISIDIC*
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mRNA from alignment at A-nodosum_M_contig1258:218980..219574-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig1258.16.1 ID=mRNA_A-nodosum_M_contig1258.16.1|Name=mRNA_A-nodosum_M_contig1258.16.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=595bp|location=Sequence derived from alignment at A-nodosum_M_contig1258:218980..219574- (Ascophyllum nodosum dioecious)
GAAATTTTACTCTCGTTCACGTATTGTCGGTGGGTGACACAAGCACAGCC
CGGTAAGAATGCATGCGCTACTCCTAAGTTTTGTATAATACGTACAGAAC
TACAGACGCCGCACCGATGTTGTTTGTAGGCTACCAAAATTCCACGTCTG
GCTTTAAACTCGTTCCAATATTCTATTAGATCAAAGGTCTTCGTAAATTT
TACTGATGAATCAGATGTGAGCGATTTCATACTTGTCGGGCTCCCCGGAA
GTACAGCAGGTTCGTCGGTTAATACAGTTTTCACTACACAGGCGTCTTAG
ATTCAGTCTATACCACATAGCCTCCGTACGCATGCTTTCTGTAGTGCTGC
AGTCGGATACAGTACGTTGCCCCAGCGATAATTCTGTCAGAATCGGGCGA
ACGGATACATCGAGAGAAAAAAATCCAACACAACGGATGCACACAGCATG
CCGTATCGTTACACGGGGGTCATGTTGTACCCAAGAGCTTTTCGCAGAGT
TCGACGGCAACAACTGTGAAAGCTGCCGAAGTTTGGAACAGCTGGTCACG
CCGCTATGCGCCGCACATAGAGGAATTTCTATTGATATCTGCTGA
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Coding sequence (CDS) from alignment at A-nodosum_M_contig1258:218980..219574-

>mRNA_A-nodosum_M_contig1258.16.1 ID=mRNA_A-nodosum_M_contig1258.16.1|Name=mRNA_A-nodosum_M_contig1258.16.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=285bp|location=Sequence derived from alignment at A-nodosum_M_contig1258:218980..219574- (Ascophyllum nodosum dioecious)
GAAATTTTACTCTCGTTCACGTATTGTCGGTGGGTGACACAAGCACAGCC
CGTACGTTGCCCCAGCGATAATTCTGTCAGAATCGGGCGAACGGATACAT
CGAGAGAAAAAAATCCAACACAACGGATGCACACAGCATGCCGTATCGTT
ACACGGGGGTCATGTTGTACCCAAGAGCTTTTCGCAGAGTTCGACGGCAA
CAACTGTGAAAGCTGCCGAAGTTTGGAACAGCTGGTCACGCCGCTATGCG
CCGCACATAGAGGAATTTCTATTGATATCTGCTGA
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