mRNA_A-nodosum_M_contig1253.3.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig1253.3.1
Unique NamemRNA_A-nodosum_M_contig1253.3.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1253.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig1253contigA-nodosum_M_contig1253:13871..14280 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size157
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Cds size156
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866685.4286735-CDS-A-nodosum_M_contig1253:13870..139491680866685.4286735-CDS-A-nodosum_M_contig1253:13870..13949Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1253 13871..13949 +
1680866685.437072-CDS-A-nodosum_M_contig1253:14202..142791680866685.437072-CDS-A-nodosum_M_contig1253:14202..14279Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1253 14203..14279 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig1253.3.1prot_A-nodosum_M_contig1253.3.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig1253 13871..14279 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig1253.3.1

>prot_A-nodosum_M_contig1253.3.1 ID=prot_A-nodosum_M_contig1253.3.1|Name=mRNA_A-nodosum_M_contig1253.3.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=52bp
QPKCLASISLAPCDRTQRHSSYPSFKGCKHGARLGTGWFAPLLFAPLPGA
PG
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mRNA from alignment at A-nodosum_M_contig1253:13871..14280+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig1253.3.1 ID=mRNA_A-nodosum_M_contig1253.3.1|Name=mRNA_A-nodosum_M_contig1253.3.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=410bp|location=Sequence derived from alignment at A-nodosum_M_contig1253:13871..14280+ (Ascophyllum nodosum dioecious)
CAACCCAAATGCCTCGCCAGCATCTCACTTGCCCCATGCGACCGTACACA
ACGACACTCGAGCTATCCAAGCTTTAAAGGTGTGTTCAAAAACGTCTCGG
TGTTTAAGAAAATCTGAACGCATCTAAGCATTCTGAGCATCCACCTTCAG
GGAAAAAAATGTCTAAAGGCTCGGTTGGGAACATCGGCTGTAGAGACAAA
CGAGCAGGTCGCAAGCATTACTGCTACAGCtTTTTTGTGAGGCCTACTGT
ACTGAGGTATTGCGCTGATCATTGTTGTAGCTTACTTACGTAAGTGCACA
TGGAATCGTTGCTCTGTCGTTGTTCATCACAGGTTGCAAGCACGGTGCTC
GTCTGGGAACGGGATGGTTTGCACCGCTTTTATTTGCGCCGTTACCGGGT
GCTCCAGGAC
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Coding sequence (CDS) from alignment at A-nodosum_M_contig1253:13871..14280+

>mRNA_A-nodosum_M_contig1253.3.1 ID=mRNA_A-nodosum_M_contig1253.3.1|Name=mRNA_A-nodosum_M_contig1253.3.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=156bp|location=Sequence derived from alignment at A-nodosum_M_contig1253:13871..14280+ (Ascophyllum nodosum dioecious)
CAACCCAAATGCCTCGCCAGCATCTCACTTGCCCCATGCGACCGTACACA
ACGACACTCGAGCTATCCAAGCTTTAAAGGTTGCAAGCACGGTGCTCGTC
TGGGAACGGGATGGTTTGCACCGCTTTTATTTGCGCCGTTACCGGGTGCT
CCAGGA
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