mRNA_A-nodosum_M_contig1253.11.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig1253.11.1
Unique NamemRNA_A-nodosum_M_contig1253.11.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
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BLAST of mRNA_A-nodosum_M_contig1253.11.1 vs. uniprot
Match: A0A6H5KWJ9_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KWJ9_9PHAE)

HSP 1 Score: 257 bits (656), Expect = 5.360e-75
Identity = 156/372 (41.94%), Postives = 205/372 (55.11%), Query Frame = 2 
Query:   41 YKRGEMGRSVLEAALSLPSRAMNRSRAEDMTTEEKDFAHFSNEIYKKPDDRDTTLR-------------GYTLLQTEIPKHEG----SVSLNDERWAVYRAPNGIDHILVFRGTANWEDVGHDLEL-QGGFGEHKYMMDAAVWSSRVMLFLNAEFSRNVEGGDEAH----LRFRVTGHSLGGAVAMGVILYLHDIPNVAKQLEGDGIERERSPDFTVFKQEIADPWNAEFSR-KGSEPPYELCGGHVFNPGAWPR------------------DFPRDYATLMAVGSDVLVGNYGSLMHVYDQHYNVINSGNRVEKGVTTHHVIGDLISCCYRMGKEKTYPPKDTMA--FLMSWWPGKKDKARGPHSMLNFL 1027
            Y+ GEMGR ++E  L+LP R +  S  EDMT EEK FA  S+E+YKKP + D                 GYTLL+ EIP   G    + SLND RWAV+RAPN +D++L FRGTA+  D  +D+ L  G F +HKYM++A VW+ RV+LFL+ +                LRF VTGHSLGG VAMGV++ LHDIP  A+          R P+ T ++Q++   WNAE +   G+  PYEL GGH+FNPGAWP                    F    A   A    V VG+ G ++ +Y    +     + V+K VTTHH+IGD++S  +R+G EK Y PKD  A     +  PGK  K  G HS+ NFL
Sbjct:   10 YEPGEMGRGLIETVLTLPRRLVRTSHLEDMTDEEKAFACLSSEVYKKPGNDDXXXXXNPASDEHRGARCGYTLLRGEIPAAAGDDGPAASLNDTRWAVFRAPNQVDYVLAFRGTADRRDALNDVLLVHGDFDQHKYMLNATVWALRVILFLSKQHDNGXXXXXXXXXXXGLRFSVTGHSLGGTVAMGVMVLLHDIPTTAR----------RRPNDTRYQQQVLGAWNAERANWSGAAAPYELVGGHIFNPGAWPGLVGPVAGGSAVAGFWLTGGFAVAGAAATAAMCAVTVGS-GCVLAIYLYRSHTERLSDPVDKRVTTHHIIGDVVSGFFRLGTEKNYMPKDKRARRLATACSPGKIGKEWGCHSIANFL 370
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BLAST of mRNA_A-nodosum_M_contig1253.11.1 vs. uniprot
Match: D7FQN2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQN2_ECTSI)

HSP 1 Score: 196 bits (499), Expect = 6.230e-54
Identity = 121/318 (38.05%), Postives = 165/318 (51.89%), Query Frame = 2 
Query:   50 GEMGRSVLEAALSLPSRAMNRSRAEDMTTEEKDFAHFSNEIYKKPDDRDTTLRGYTLLQTEIPKHEGSVS-------LNDERWAVYRAPNGIDHILVFRGTANWEDVGHDLEL-QGGFGEHKYMMDAAVWSSRVMLFLNAEFSRNVEGG-------DEAHLRFRVTGHSLGGAVAMGVILYLHDIPNVAKQLEGDG-IERERSPDFTVFKQEIADPWNAEFSRKGSEPPYELCGGHVFNPGAWPRDFPRDYATLMAVG----SDVLVGNYGSLMHVYDQHYNVINSGNRVEKGVTTHHVIGDLISCCYRMGKEKTYPP 943
            GEMG S      S P RA   SR   +T +++DFAHF N  Y  PDDR T LRGY LLQ ++P  +G+         LN +RW VYR PN ++H LVFRGT +  D+ +D  L   G  +HK MMD+A ++ R M+FL  +       G       D   L+F VTGHSLGG+ AMGV+L L+D   +A  LE +    + R     +++++I D      +   S  PYEL GG +FNPG+ PR        +   G       ++   G  +  Y         G R +  V  HHV+GD IS  +RMGKE++Y P
Sbjct:   97 GEMGMSCCWTIFSCPYRATQASRLSSITEQQRDFAHFCNVSYSNPDDRPTELRGYELLQGDMPLRDGADESGATTEPLNAQRWMVYRHPNRVNHALVFRGTVDKLDIEYDAHLLTKGLADHKLMMDSAAFALRAMVFLEKQAKEERHAGAGGADSLDTTCLKFWVTGHSLGGSTAMGVMLLLNDPVAMAATLEANAKTHKSRQQFLEMYREKIVDXXXXXVAEIYSNRPYELVGGDIFNPGSPPRCILLSNPCVCLFGLLSLPAYIISRCG--LFCYRCCKQSRQHGPRADLLVNNHHVLGDTISMTFRMGKEQSYWP 412
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1253.11.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KWJ9_9PHAE5.360e-7541.94Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
D7FQN2_ECTSI6.230e-5438.05Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig1253contigA-nodosum_M_contig1253:180978..182487 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1510
Hectar predicted targeting categoryother localisation
Exons1
Cds size1014
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866685.5607529-UTR-A-nodosum_M_contig1253:180977..1814571680866685.5607529-UTR-A-nodosum_M_contig1253:180977..181457Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig1253 180978..181457 -
1680866685.5793655-UTR-A-nodosum_M_contig1253:182471..1824871680866685.5793655-UTR-A-nodosum_M_contig1253:182471..182487Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig1253 182472..182487 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866685.5697823-CDS-A-nodosum_M_contig1253:181457..1824711680866685.5697823-CDS-A-nodosum_M_contig1253:181457..182471Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1253 181458..182471 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig1253.11.1prot_A-nodosum_M_contig1253.11.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig1253 181458..182471 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig1253.11.1

>prot_A-nodosum_M_contig1253.11.1 ID=prot_A-nodosum_M_contig1253.11.1|Name=mRNA_A-nodosum_M_contig1253.11.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=338bp
MTSGSEEFYKRGEMGRSVLEAALSLPSRAMNRSRAEDMTTEEKDFAHFSN
EIYKKPDDRDTTLRGYTLLQTEIPKHEGSVSLNDERWAVYRAPNGIDHIL
VFRGTANWEDVGHDLELQGGFGEHKYMMDAAVWSSRVMLFLNAEFSRNVE
GGDEAHLRFRVTGHSLGGAVAMGVILYLHDIPNVAKQLEGDGIERERSPD
FTVFKQEIADPWNAEFSRKGSEPPYELCGGHVFNPGAWPRDFPRDYATLM
AVGSDVLVGNYGSLMHVYDQHYNVINSGNRVEKGVTTHHVIGDLISCCYR
MGKEKTYPPKDTMAFLMSWWPGKKDKARGPHSMLNFL*
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mRNA from alignment at A-nodosum_M_contig1253:180978..182487-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig1253.11.1 ID=mRNA_A-nodosum_M_contig1253.11.1|Name=mRNA_A-nodosum_M_contig1253.11.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=1510bp|location=Sequence derived from alignment at A-nodosum_M_contig1253:180978..182487- (Ascophyllum nodosum dioecious)
GGTGGCTCGAGTAATTATGACTTCAGGATCCGAGGAATTCTACAAGCGAG
GAGAGATGGGACGAAGCGTCCTAGAAGCAGCCTTGTCGTTACCTAGCCGG
GCCATGAACAGATCGCGCGCCGAGGACATGACAACAGAAGAAAAAGACTT
CGCACACTTCAGCAACGAGATATACAAGAAGCCGGACGACCGCGACACGA
CACTCCGTGGCTATACTCTCTTGCAAACCGAGATTCCCAAACACGAGGGG
TCCGTATCGTTGAATGACGAGCGCTGGGCCGTATATCGCGCGCCGAATGG
CATTGACCACATTCTCGTGTTTCGTGGGACAGCAAACTGGGAAGATGTTG
GCCATGACCTCGAACTCCAAGGGGGGTTCGGAGAACACAAGTACATGATG
GATGCCGCGGTGTGGTCATCCCGGGTGATGTTATTCTTGAACGCCGAGTT
TAGCCGCAACGTCGAAGGTGGTGATGAAGCACACCTCAGGTTTCGGGTGA
CGGGACACTCGCTAGGCGGTGCTGTGGCGATGGGAGTAATTCTATACCTG
CATGATATCCCAAATGTCGCTAAGCAACTCGAAGGCGACGGGATTGAGCG
TGAACGATCTCCCGATTTCACCGTGTTCAAACAGGAGATAGCGGATCCCT
GGAACGCTGAGTTCTCAAGGAAAGGTTCTGAGCCGCCGTACGAACTATGT
GGTGGGCATGTCTTCAACCCCGGGGCCTGGCCCCGGGACTTTCCTCGTGA
CTACGCGACGCTTATGGCCGTTGGATCTGACGTTCTGGTCGGCAACTACG
GCTCGCTCATGCACGTCTACGATCAACACTATAATGTGATCAATAGCGGC
AATCGTGTCGAGAAGGGGGTGACAACCCATCACGTTATTGGAGACCTAAT
CTCGTGCTGTTACCGCATGGGAAAGGAGAAGACCTACCCGCCGAAGGACA
CGATGGCGTTTCTGATGTCCTGGTGGCCCGGTAAGAAGGACAAAGCACGG
GGGCCGCACAGCATGTTGAACTTCTTATGATCAGCGACTACGATGTTGAT
ATAAAACCTTTTTCTCCAGTCAAGGAACGTTTGTTGCCGGGAGTTTCGAT
CGGCAATGGGGTAATCGACTACGTTTCCGGACCTCAAACCTGGTTACACG
GGGAAAACGTTAAACCTTTCCCTGCTAGACGTTGCTGCACCGCTTATGGT
TATTTGTACTTTTCTATGGTGCTTGGGGATATGCTATTGCAAGGCTTGAT
GGGAACCATTCATGTGGTCTTTTGTGTAAAAATTTCGCTTGAGGTTATAT
GTCGGGACGAGTTTCTTTCGACTTTTGCCTTGGTCCACGATGCATTCCAT
CCGATCCGTGTTTGACATACGGTAATGCTTGAGTTGTGATGACGACGAGG
GAAGTTGGTGGGTGTTGGAATGATTACGCCGAGGTCCGGAGAATCCCGCT
ACTTTTTTGTGTGATCGCACAGACGTCTGTAGACTATATAGCCCGTGCAA
GCTATTAATA
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Coding sequence (CDS) from alignment at A-nodosum_M_contig1253:180978..182487-

>mRNA_A-nodosum_M_contig1253.11.1 ID=mRNA_A-nodosum_M_contig1253.11.1|Name=mRNA_A-nodosum_M_contig1253.11.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=1014bp|location=Sequence derived from alignment at A-nodosum_M_contig1253:180978..182487- (Ascophyllum nodosum dioecious)
ATGACTTCAGGATCCGAGGAATTCTACAAGCGAGGAGAGATGGGACGAAG
CGTCCTAGAAGCAGCCTTGTCGTTACCTAGCCGGGCCATGAACAGATCGC
GCGCCGAGGACATGACAACAGAAGAAAAAGACTTCGCACACTTCAGCAAC
GAGATATACAAGAAGCCGGACGACCGCGACACGACACTCCGTGGCTATAC
TCTCTTGCAAACCGAGATTCCCAAACACGAGGGGTCCGTATCGTTGAATG
ACGAGCGCTGGGCCGTATATCGCGCGCCGAATGGCATTGACCACATTCTC
GTGTTTCGTGGGACAGCAAACTGGGAAGATGTTGGCCATGACCTCGAACT
CCAAGGGGGGTTCGGAGAACACAAGTACATGATGGATGCCGCGGTGTGGT
CATCCCGGGTGATGTTATTCTTGAACGCCGAGTTTAGCCGCAACGTCGAA
GGTGGTGATGAAGCACACCTCAGGTTTCGGGTGACGGGACACTCGCTAGG
CGGTGCTGTGGCGATGGGAGTAATTCTATACCTGCATGATATCCCAAATG
TCGCTAAGCAACTCGAAGGCGACGGGATTGAGCGTGAACGATCTCCCGAT
TTCACCGTGTTCAAACAGGAGATAGCGGATCCCTGGAACGCTGAGTTCTC
AAGGAAAGGTTCTGAGCCGCCGTACGAACTATGTGGTGGGCATGTCTTCA
ACCCCGGGGCCTGGCCCCGGGACTTTCCTCGTGACTACGCGACGCTTATG
GCCGTTGGATCTGACGTTCTGGTCGGCAACTACGGCTCGCTCATGCACGT
CTACGATCAACACTATAATGTGATCAATAGCGGCAATCGTGTCGAGAAGG
GGGTGACAACCCATCACGTTATTGGAGACCTAATCTCGTGCTGTTACCGC
ATGGGAAAGGAGAAGACCTACCCGCCGAAGGACACGATGGCGTTTCTGAT
GTCCTGGTGGCCCGGTAAGAAGGACAAAGCACGGGGGCCGCACAGCATGT
TGAACTTCTTATGA
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