mRNA_A-nodosum_M_contig12497.2.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig12497.2.1
Unique NamemRNA_A-nodosum_M_contig12497.2.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig12497.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig12497contigA-nodosum_M_contig12497:1042..1942 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size901
Hectar predicted targeting categoryother localisation
Exons1
Cds size558
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866679.8605566-UTR-A-nodosum_M_contig12497:1041..13821680866679.8605566-UTR-A-nodosum_M_contig12497:1041..1382Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig12497 1042..1382 -
1680866679.8881783-UTR-A-nodosum_M_contig12497:1940..19421680866679.8881783-UTR-A-nodosum_M_contig12497:1940..1942Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig12497 1941..1942 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866679.8723342-CDS-A-nodosum_M_contig12497:1382..19401680866679.8723342-CDS-A-nodosum_M_contig12497:1382..1940Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig12497 1383..1940 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig12497.2.1prot_A-nodosum_M_contig12497.2.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig12497 1383..1940 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig12497.2.1

>prot_A-nodosum_M_contig12497.2.1 ID=prot_A-nodosum_M_contig12497.2.1|Name=mRNA_A-nodosum_M_contig12497.2.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=186bp
MSQSRSSVPARNNRSRTAFGRIGAELECIDNDYRGMQQQQDSRGNASLGE
AGLLPDRRLWSGEGHRSSEDEDSSDVSADASCFACTVLVGRARAKSDFLK
KSQNAELDHDRLGRQVAMVLVRWSFKRLQMCVWVSLILGVLILIAGSRSN
LIYYLFKASGAKHNFHALSLELGVYYLISVSQPCD*
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mRNA from alignment at A-nodosum_M_contig12497:1042..1942-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig12497.2.1 ID=mRNA_A-nodosum_M_contig12497.2.1|Name=mRNA_A-nodosum_M_contig12497.2.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=901bp|location=Sequence derived from alignment at A-nodosum_M_contig12497:1042..1942- (Ascophyllum nodosum dioecious)
GCATGTCGCAATCGAGAAGCTCAGTCCCGGCAAGGAACAACAGGAGCAGG
ACCGCATTTGGAAGGATTGGTGCCGAGCTCGAATGTATAGACAATGACTA
TCGCGGTATGCAACAACAACAAGATTCCAGGGGAAACGCGTCGTTGGGCG
AAGCTGGATTGTTGCCCGATAGGAGGTTGTGGTCGGGCGAGGGACATCGT
TCTAGCGAAGACGAAGACTCAAGTGACGTGAGCGCAGATGCATCTTGTTT
TGCTTGCACTGTGTTGGTGGGTCGGGCAAGGGCGAAAAGCGACTTCTTAA
AGAAGAGTCAAAATGCCGAGCTTGACCATGATCGATTAGGACGACAAGTA
GCTATGGTTTTAGTCCGCTGGAGTTTCAAAAGGCTACAGATGTGTGTCTG
GGTTTCACTCATTTTGGGTGTTCTAATATTAATAGCAGGATCACGATCTA
ATCTAATCTACTATCTATTCAAAGCCAGCGGTGCTAAACATAATTTCCAC
GCACTCTCCCTAGAGCTTGGGGTCTACTATCTAATAAGCGTATCACAACC
TTGTGATTAGCAAAAGAGCGTGAACTTTGGCAGCGGGCGCTCGGCGACGG
GGGCCCTGGGTAGTTCAGAATATCTCCGATTATTTTTTTCCGCGATTCAC
TAGCGCTGTAGATTCTGGCCACCTCAGAACATTGTGCTACGTGTTTCTTA
TGTCGTTCTCTGTCTCATCTGCGGCGCTTCGAGACACCAGGGAAGAATTC
CTTTCTGATTCAGCTTGTCGCACATAATCGCTACTATTTTACTATCACCC
GGAGGATGCTCTTTATTGATTGCAGGGCGCTTTTGGGGGGGATACTGGCA
TTCGCCTCCTTGGCGGTGCTCATCGGGGACCCATCGTCACACATGAGAGA
T
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Coding sequence (CDS) from alignment at A-nodosum_M_contig12497:1042..1942-

>mRNA_A-nodosum_M_contig12497.2.1 ID=mRNA_A-nodosum_M_contig12497.2.1|Name=mRNA_A-nodosum_M_contig12497.2.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=558bp|location=Sequence derived from alignment at A-nodosum_M_contig12497:1042..1942- (Ascophyllum nodosum dioecious)
ATGTCGCAATCGAGAAGCTCAGTCCCGGCAAGGAACAACAGGAGCAGGAC
CGCATTTGGAAGGATTGGTGCCGAGCTCGAATGTATAGACAATGACTATC
GCGGTATGCAACAACAACAAGATTCCAGGGGAAACGCGTCGTTGGGCGAA
GCTGGATTGTTGCCCGATAGGAGGTTGTGGTCGGGCGAGGGACATCGTTC
TAGCGAAGACGAAGACTCAAGTGACGTGAGCGCAGATGCATCTTGTTTTG
CTTGCACTGTGTTGGTGGGTCGGGCAAGGGCGAAAAGCGACTTCTTAAAG
AAGAGTCAAAATGCCGAGCTTGACCATGATCGATTAGGACGACAAGTAGC
TATGGTTTTAGTCCGCTGGAGTTTCAAAAGGCTACAGATGTGTGTCTGGG
TTTCACTCATTTTGGGTGTTCTAATATTAATAGCAGGATCACGATCTAAT
CTAATCTACTATCTATTCAAAGCCAGCGGTGCTAAACATAATTTCCACGC
ACTCTCCCTAGAGCTTGGGGTCTACTATCTAATAAGCGTATCACAACCTT
GTGATTAG
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