mRNA_A-nodosum_M_contig1243.22.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig1243.22.1
Unique NamemRNA_A-nodosum_M_contig1243.22.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
[Close]
BLAST of mRNA_A-nodosum_M_contig1243.22.1 vs. uniprot
Match: A0A6H5JLH5_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLH5_9PHAE)

HSP 1 Score: 153 bits (387), Expect = 1.220e-43
Identity = 80/148 (54.05%), Postives = 101/148 (68.24%), Query Frame = 1 
Query:    1 YRQTTSFTYLGGTVTEMPNLSDEIDRRIRAGWMGFKRYKRELYDLPKASLLPLKARMVRSEVVEALLYGCVTWTTLKCHYAKLRTTHHRMLLRILGAWCKSPNKRILSYKDALHRTQCESIETTVRTRRLLWAGALLRMGDHRLPKRV 444
            Y QTT F YLGG V E  +L+ EI+ R +A W   KRY  EL+D P A    LKAR++++E VEALLYGC+TW+  + HY  L+TTHHR+LLR++G   K    R LSY  AL R  C+S+E TVR RRLL+AGA+ R  D RLPKR+
Sbjct:   51 YAQTTEFRYLGGLVNEQGDLTREINHRSKAAWACIKRYATELFDRPGAPFR-LKARLLQAEAVEALLYGCMTWSPRRNHYGMLQTTHHRLLLRVIGYRRKRGTYRQLSYAQALKRVGCQSVEATVRQRRLLFAGAVARQPDGRLPKRL 197
[Close]
BLAST of mRNA_A-nodosum_M_contig1243.22.1 vs. uniprot
Match: A0A6H5JAH7_9PHAE (Reverse transcriptase domain-containing protein n=5 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAH7_9PHAE)

HSP 1 Score: 152 bits (383), Expect = 3.730e-43
Identity = 78/148 (52.70%), Postives = 100/148 (67.57%), Query Frame = 1 
Query:    1 YRQTTSFTYLGGTVTEMPNLSDEIDRRIRAGWMGFKRYKRELYDLPKASLLPLKARMVRSEVVEALLYGCVTWTTLKCHYAKLRTTHHRMLLRILGAWCKSPNKRILSYKDALHRTQCESIETTVRTRRLLWAGALLRMGDHRLPKRV 444
            Y QTT F YLGG V E  +L+ EI+ R R  W   +RY REL+D P+A    LK R++++E +EALLYGC+TW+ L  HY  LR+ HHR+LLR++G   K    R LSY   L R +CES+E T+R RRLL+AGAL R  D RLPKR+
Sbjct:   72 YAQTTEFRYLGGLVNEHGDLTREINYRSRGAWACLRRYGRELFDRPQAPFR-LKIRLLQAEAMEALLYGCMTWSPLSGHYQTLRSIHHRLLLRVIGYKRKKDTYRQLSYAQTLRRVECESVEPTIRQRRLLFAGALARQPDGRLPKRL 218
[Close]
BLAST of mRNA_A-nodosum_M_contig1243.22.1 vs. uniprot
Match: A0A6H5JWS4_9PHAE (Reverse transcriptase domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWS4_9PHAE)

HSP 1 Score: 153 bits (387), Expect = 9.500e-43
Identity = 80/148 (54.05%), Postives = 101/148 (68.24%), Query Frame = 1 
Query:    1 YRQTTSFTYLGGTVTEMPNLSDEIDRRIRAGWMGFKRYKRELYDLPKASLLPLKARMVRSEVVEALLYGCVTWTTLKCHYAKLRTTHHRMLLRILGAWCKSPNKRILSYKDALHRTQCESIETTVRTRRLLWAGALLRMGDHRLPKRV 444
            Y QTT F YLGG V E  +L+ EI+ R +A W   KRY  EL+D P A    LKAR++++E VEALLYGC+TW+  + HY  L+TTHHR+LLR++G   K    R LSY  AL R  C+S+E TVR RRLL+AGA+ R  D RLPKR+
Sbjct:   70 YAQTTEFRYLGGLVNEQGDLTREINHRSKAAWACIKRYATELFDRPGAPFR-LKARLLQAEAVEALLYGCMTWSPRRNHYGMLQTTHHRLLLRVIGYRRKRGTYRQLSYAQALKRVGCQSVEATVRQRRLLFAGAVARQPDGRLPKRL 216
[Close]
BLAST of mRNA_A-nodosum_M_contig1243.22.1 vs. uniprot
Match: A0A6H5KLX9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLX9_9PHAE)

HSP 1 Score: 152 bits (383), Expect = 1.650e-42
Identity = 78/148 (52.70%), Postives = 101/148 (68.24%), Query Frame = 1 
Query:    1 YRQTTSFTYLGGTVTEMPNLSDEIDRRIRAGWMGFKRYKRELYDLPKASLLPLKARMVRSEVVEALLYGCVTWTTLKCHYAKLRTTHHRMLLRILGAWCKSPNKRILSYKDALHRTQCESIETTVRTRRLLWAGALLRMGDHRLPKRV 444
            Y QTT F YLGG + E  +L+ EI+ R +A W   +RY  EL+D P A    LKAR++++E VEALLYGC+TW+  + HY  L+TTHHR+LLR++G   K    R LSY  AL R  C+S+E TVR RRLL+AGA+ R  D RLPKR+
Sbjct:  102 YAQTTEFRYLGGLINEQGDLTREINHRSKAAWACIRRYATELFDRPGAPFR-LKARLLQAEAVEALLYGCMTWSPRRNHYGMLQTTHHRLLLRVIGYRRKRGTYRQLSYAQALKRVGCQSVEATVRQRRLLFAGAVARQPDGRLPKRL 248
[Close]
BLAST of mRNA_A-nodosum_M_contig1243.22.1 vs. uniprot
Match: A0A6H5KBN1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBN1_9PHAE)

HSP 1 Score: 147 bits (370), Expect = 4.630e-41
Identity = 76/148 (51.35%), Postives = 96/148 (64.86%), Query Frame = 1 
Query:    1 YRQTTSFTYLGGTVTEMPNLSDEIDRRIRAGWMGFKRYKRELYDLPKASLLPLKARMVRSEVVEALLYGCVTWTTLKCHYAKLRTTHHRMLLRILGAWCKSPNKRILSYKDALHRTQCESIETTVRTRRLLWAGALLRMGDHRLPKRV 444
            Y QTT F YLGG V E  +L+ EI+ R R  W   +RY REL+D PKA    LK  + ++E +EALLYGC+TW+ L  HY  LR+ HHR+LLR++G   K    R LSY   L R  C+S+E T+R RRLL+AGA  R  D RLPKR+
Sbjct:  107 YAQTTEFRYLGGLVNEHGDLTREINYRSRGAWACLRRYDRELFDRPKAPFR-LKIHLRQAEAMEALLYGCMTWSPLSGHYQTLRSIHHRLLLRVIGYMRKEDTYRQLSYPQTLKRVGCQSVEATIRQRRLLFAGAFARQPDGRLPKRL 253
[Close]
BLAST of mRNA_A-nodosum_M_contig1243.22.1 vs. uniprot
Match: A0A6H5L6U6_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6U6_9PHAE)

HSP 1 Score: 150 bits (380), Expect = 6.430e-41
Identity = 77/148 (52.03%), Postives = 98/148 (66.22%), Query Frame = 1 
Query:    1 YRQTTSFTYLGGTVTEMPNLSDEIDRRIRAGWMGFKRYKRELYDLPKASLLPLKARMVRSEVVEALLYGCVTWTTLKCHYAKLRTTHHRMLLRILGAWCKSPNKRILSYKDALHRTQCESIETTVRTRRLLWAGALLRMGDHRLPKRV 444
            Y QTT F YLGG V E  +L+ EI  R R  W   +RY REL+D P+A    LK R++++E +EALLYGC+TW+ L  HY  LR+ HHR+LLR++G   K    R LSY   L R +C+S+E T+R RRLL AGAL R  D RLPKR+
Sbjct:   72 YAQTTEFRYLGGLVNEHGDLTREISHRSRGAWACLRRYGRELFDRPQAPFR-LKIRLLQAEAMEALLYGCMTWSPLSGHYQTLRSIHHRLLLRVIGYKRKKDTYRQLSYAQTLKRVECQSVEATIRQRRLLLAGALARQSDGRLPKRL 218
[Close]
BLAST of mRNA_A-nodosum_M_contig1243.22.1 vs. uniprot
Match: A0A6H5JEX7_9PHAE (Reverse transcriptase domain-containing protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEX7_9PHAE)

HSP 1 Score: 153 bits (387), Expect = 1.860e-40
Identity = 80/148 (54.05%), Postives = 101/148 (68.24%), Query Frame = 1 
Query:    1 YRQTTSFTYLGGTVTEMPNLSDEIDRRIRAGWMGFKRYKRELYDLPKASLLPLKARMVRSEVVEALLYGCVTWTTLKCHYAKLRTTHHRMLLRILGAWCKSPNKRILSYKDALHRTQCESIETTVRTRRLLWAGALLRMGDHRLPKRV 444
            Y QTT F YLGG V E  +L+ EI+ R +A W   KRY  EL+D P A    LKAR++++E VEALLYGC+TW+  + HY  L+TTHHR+LLR++G   K    R LSY  AL R  C+S+E TVR RRLL+AGA+ R  D RLPKR+
Sbjct:  521 YAQTTEFRYLGGLVNEQGDLTREINHRSKAAWACIKRYATELFDRPGAPFR-LKARLLQAEAVEALLYGCMTWSPRRNHYGMLQTTHHRLLLRVIGYRRKRGTYRQLSYAQALKRVGCQSVEATVRQRRLLFAGAVARQPDGRLPKRL 667
[Close]
BLAST of mRNA_A-nodosum_M_contig1243.22.1 vs. uniprot
Match: A0A6H5KA81_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KA81_9PHAE)

HSP 1 Score: 152 bits (384), Expect = 1.990e-40
Identity = 79/148 (53.38%), Postives = 101/148 (68.24%), Query Frame = 1 
Query:    1 YRQTTSFTYLGGTVTEMPNLSDEIDRRIRAGWMGFKRYKRELYDLPKASLLPLKARMVRSEVVEALLYGCVTWTTLKCHYAKLRTTHHRMLLRILGAWCKSPNKRILSYKDALHRTQCESIETTVRTRRLLWAGALLRMGDHRLPKRV 444
            Y QTT F YLGG V E  +L+ EI+ R +A W   +RY  EL+D P A    LKAR++++E VEALLYGC+TW+  + HY  L+TTHHR+LLR++G   K    R LSY  AL R  C+S+E TVR RRLL+AGA+ R  D RLPKR+
Sbjct:  353 YAQTTEFRYLGGLVNEQGDLTREINHRSKAAWACIRRYATELFDRPGAPFR-LKARLLQAEAVEALLYGCMTWSPRRNHYGMLQTTHHRLLLRVIGYRRKRGTYRQLSYAQALKRVGCQSVEATVRQRRLLFAGAVARQPDGRLPKRL 499
[Close]
BLAST of mRNA_A-nodosum_M_contig1243.22.1 vs. uniprot
Match: A0A6H5K7U5_9PHAE (Reverse transcriptase domain-containing protein n=9 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7U5_9PHAE)

HSP 1 Score: 153 bits (387), Expect = 2.340e-40
Identity = 80/148 (54.05%), Postives = 101/148 (68.24%), Query Frame = 1 
Query:    1 YRQTTSFTYLGGTVTEMPNLSDEIDRRIRAGWMGFKRYKRELYDLPKASLLPLKARMVRSEVVEALLYGCVTWTTLKCHYAKLRTTHHRMLLRILGAWCKSPNKRILSYKDALHRTQCESIETTVRTRRLLWAGALLRMGDHRLPKRV 444
            Y QTT F YLGG V E  +L+ EI+ R +A W   KRY  EL+D P A    LKAR++++E VEALLYGC+TW+  + HY  L+TTHHR+LLR++G   K    R LSY  AL R  C+S+E TVR RRLL+AGA+ R  D RLPKR+
Sbjct:  850 YAQTTEFRYLGGLVNEQGDLTREINHRSKAAWACIKRYATELFDRPGAPFR-LKARLLQAEAVEALLYGCMTWSPRRNHYGMLQTTHHRLLLRVIGYRRKRGTYRQLSYAQALKRVGCQSVEATVRQRRLLFAGAVARQPDGRLPKRL 996
[Close]
BLAST of mRNA_A-nodosum_M_contig1243.22.1 vs. uniprot
Match: A0A6H5K319_9PHAE (Reverse transcriptase domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K319_9PHAE)

HSP 1 Score: 153 bits (387), Expect = 2.380e-40
Identity = 80/148 (54.05%), Postives = 101/148 (68.24%), Query Frame = 1 
Query:    1 YRQTTSFTYLGGTVTEMPNLSDEIDRRIRAGWMGFKRYKRELYDLPKASLLPLKARMVRSEVVEALLYGCVTWTTLKCHYAKLRTTHHRMLLRILGAWCKSPNKRILSYKDALHRTQCESIETTVRTRRLLWAGALLRMGDHRLPKRV 444
            Y QTT F YLGG V E  +L+ EI+ R +A W   KRY  EL+D P A    LKAR++++E VEALLYGC+TW+  + HY  L+TTHHR+LLR++G   K    R LSY  AL R  C+S+E TVR RRLL+AGA+ R  D RLPKR+
Sbjct: 1137 YAQTTEFRYLGGLVNEQGDLTREINHRSKAAWACIKRYATELFDRPGAPFR-LKARLLQAEAVEALLYGCMTWSPRRNHYGMLQTTHHRLLLRVIGYRRKRGTYRQLSYAQALKRVGCQSVEATVRQRRLLFAGAVARQPDGRLPKRL 1283
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1243.22.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JLH5_9PHAE1.220e-4354.05Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JAH7_9PHAE3.730e-4352.70Reverse transcriptase domain-containing protein n=... [more]
A0A6H5JWS4_9PHAE9.500e-4354.05Reverse transcriptase domain-containing protein n=... [more]
A0A6H5KLX9_9PHAE1.650e-4252.70Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KBN1_9PHAE4.630e-4151.35Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L6U6_9PHAE6.430e-4152.03Reverse transcriptase domain-containing protein n=... [more]
A0A6H5JEX7_9PHAE1.860e-4054.05Reverse transcriptase domain-containing protein n=... [more]
A0A6H5KA81_9PHAE1.990e-4053.38Reverse transcriptase domain-containing protein n=... [more]
A0A6H5K7U5_9PHAE2.340e-4054.05Reverse transcriptase domain-containing protein n=... [more]
A0A6H5K319_9PHAE2.380e-4054.05Reverse transcriptase domain-containing protein n=... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig1243contigA-nodosum_M_contig1243:159039..159482 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog28377.ENSACAP00000023453
Model size444
Max annot lvl33208|Metazoa
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.15e-13
EggNOG OGsKOG1075@1|root,KOG1075@2759|Eukaryota,3A35Z@33154|Opisthokonta,3BQYF@33208|Metazoa,3D7GC@33213|Bilateria,48EZY@7711|Chordata,49BMJ@7742|Vertebrata
DescriptionRibonuclease H protein
Cds size444
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866674.6219256-CDS-A-nodosum_M_contig1243:159038..1594821680866674.6219256-CDS-A-nodosum_M_contig1243:159038..159482Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1243 159039..159482 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig1243.22.1prot_A-nodosum_M_contig1243.22.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig1243 159039..159482 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig1243.22.1

>prot_A-nodosum_M_contig1243.22.1 ID=prot_A-nodosum_M_contig1243.22.1|Name=mRNA_A-nodosum_M_contig1243.22.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=148bp
YRQTTSFTYLGGTVTEMPNLSDEIDRRIRAGWMGFKRYKRELYDLPKASL
LPLKARMVRSEVVEALLYGCVTWTTLKCHYAKLRTTHHRMLLRILGAWCK
SPNKRILSYKDALHRTQCESIETTVRTRRLLWAGALLRMGDHRLPKRV
back to top

mRNA from alignment at A-nodosum_M_contig1243:159039..159482-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig1243.22.1 ID=mRNA_A-nodosum_M_contig1243.22.1|Name=mRNA_A-nodosum_M_contig1243.22.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=444bp|location=Sequence derived from alignment at A-nodosum_M_contig1243:159039..159482- (Ascophyllum nodosum dioecious)
TACCGTCAGACAACCTCCTTCACCTACTTGGGAGGCACAGTGACTGAAAT
GCCTAACCTATCAGACGAGATCGACCGGCGGATCCGCGCGGGGTGGATGG
GTTTCAAGCGCTACAAGCGGGAACTGTACGACCTCCCGAAGGCAAGCCTG
CTGCCTCTGAAGGCGCGGATGGTGAGGTCCGAGGTAGTAGAAGCTCTCTT
GTACGGATGCGTGACGTGGACCACCCTGAAGTGCCACTACGCCAAGCTCC
GTACAACCCACCACAGGATGTTGCTTCGAATTCTGGGAGCCTGGTGCAAG
TCGCCGAACAAGCGCATCCTCTCGTACAAAGATGCCCTTCACCGAACCCA
ATGCGAGAGCATCGAAACAACCGTACGCACGAGGAGGTTGTTGTGGGCGG
GGGCGCTACTCCGCATGGGTGACCACAGGCTACCCAAGAGGGTC
back to top

Coding sequence (CDS) from alignment at A-nodosum_M_contig1243:159039..159482-

>mRNA_A-nodosum_M_contig1243.22.1 ID=mRNA_A-nodosum_M_contig1243.22.1|Name=mRNA_A-nodosum_M_contig1243.22.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=444bp|location=Sequence derived from alignment at A-nodosum_M_contig1243:159039..159482- (Ascophyllum nodosum dioecious)
TACCGTCAGACAACCTCCTTCACCTACTTGGGAGGCACAGTGACTGAAAT
GCCTAACCTATCAGACGAGATCGACCGGCGGATCCGCGCGGGGTGGATGG
GTTTCAAGCGCTACAAGCGGGAACTGTACGACCTCCCGAAGGCAAGCCTG
CTGCCTCTGAAGGCGCGGATGGTGAGGTCCGAGGTAGTAGAAGCTCTCTT
GTACGGATGCGTGACGTGGACCACCCTGAAGTGCCACTACGCCAAGCTCC
GTACAACCCACCACAGGATGTTGCTTCGAATTCTGGGAGCCTGGTGCAAG
TCGCCGAACAAGCGCATCCTCTCGTACAAAGATGCCCTTCACCGAACCCA
ATGCGAGAGCATCGAAACAACCGTACGCACGAGGAGGTTGTTGTGGGCGG
GGGCGCTACTCCGCATGGGTGACCACAGGCTACCCAAGAGGGTC
back to top