mRNA_A-nodosum_M_contig1240.8.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig1240.8.1
Unique NamemRNA_A-nodosum_M_contig1240.8.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1240.8.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig1240contigA-nodosum_M_contig1240:80067..80271 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size181
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Cds size108
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866672.0186868-CDS-A-nodosum_M_contig1240:80066..801561680866672.0186868-CDS-A-nodosum_M_contig1240:80066..80156Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1240 80067..80156 -
1680866672.0279708-CDS-A-nodosum_M_contig1240:80180..801981680866672.0279708-CDS-A-nodosum_M_contig1240:80180..80198Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1240 80181..80198 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866672.0374222-UTR-A-nodosum_M_contig1240:80198..802711680866672.0374222-UTR-A-nodosum_M_contig1240:80198..80271Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig1240 80199..80271 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig1240.8.1prot_A-nodosum_M_contig1240.8.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig1240 80067..80198 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig1240.8.1

>prot_A-nodosum_M_contig1240.8.1 ID=prot_A-nodosum_M_contig1240.8.1|Name=mRNA_A-nodosum_M_contig1240.8.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=36bp
MEAGEVQFYCCVGILLKLVVVEMFFTRLITMSKTS*
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mRNA from alignment at A-nodosum_M_contig1240:80067..80271-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig1240.8.1 ID=mRNA_A-nodosum_M_contig1240.8.1|Name=mRNA_A-nodosum_M_contig1240.8.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=205bp|location=Sequence derived from alignment at A-nodosum_M_contig1240:80067..80271- (Ascophyllum nodosum dioecious)
TGGAGGCCTTCGTAGCCACCGAGGGTGAACATGCGGGCGTAAACACCCGC
ATAAAGGACGCGTGGGAGGCTTCATGGAGGCAGGGGAAGTTCTCTGTGAG
TCGATCAACCGCAACCAGTTTTATTGTTGTGTGGGAATCCTGCTCAAGTT
AGTTGTTGTTGAGATGTTTTTCACGCGGCTTATTACAATGTCCAAAACCT
CCTAA
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Coding sequence (CDS) from alignment at A-nodosum_M_contig1240:80067..80271-

>mRNA_A-nodosum_M_contig1240.8.1 ID=mRNA_A-nodosum_M_contig1240.8.1|Name=mRNA_A-nodosum_M_contig1240.8.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=108bp|location=Sequence derived from alignment at A-nodosum_M_contig1240:80067..80271- (Ascophyllum nodosum dioecious)
ATGGAGGCAGGGGAAGTTCAGTTTTATTGTTGTGTGGGAATCCTGCTCAA
GTTAGTTGTTGTTGAGATGTTTTTCACGCGGCTTATTACAATGTCCAAAA
CCTCCTAA
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