mRNA_A-nodosum_M_contig1240.14.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig1240.14.1
Unique NamemRNA_A-nodosum_M_contig1240.14.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1240.14.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig1240contigA-nodosum_M_contig1240:83017..83221 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size178
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Cds size105
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866672.1766844-UTR-A-nodosum_M_contig1240:83016..830891680866672.1766844-UTR-A-nodosum_M_contig1240:83016..83089Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig1240 83017..83089 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866672.2449813-CDS-A-nodosum_M_contig1240:83089..830961680866672.2449813-CDS-A-nodosum_M_contig1240:83089..83096Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1240 83090..83096 +
1680866672.255623-CDS-A-nodosum_M_contig1240:83123..832211680866672.255623-CDS-A-nodosum_M_contig1240:83123..83221Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1240 83124..83221 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig1240.14.1prot_A-nodosum_M_contig1240.14.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig1240 83090..83221 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig1240.14.1

>prot_A-nodosum_M_contig1240.14.1 ID=prot_A-nodosum_M_contig1240.14.1|Name=mRNA_A-nodosum_M_contig1240.14.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=35bp
MEDRNQFYCCVGILLKLVVVEMFFTRLITMSKTS*
back to top

mRNA from alignment at A-nodosum_M_contig1240:83017..83221+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig1240.14.1 ID=mRNA_A-nodosum_M_contig1240.14.1|Name=mRNA_A-nodosum_M_contig1240.14.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=205bp|location=Sequence derived from alignment at A-nodosum_M_contig1240:83017..83221+ (Ascophyllum nodosum dioecious)
TGGAGGCCTTCGTAGCCACCGAGGGTGAACATGCGGGCGTAAACACCCGC
ATAAAGGACGCGTGGGAGGCTTCATGGAGGCAGGGGAAGTTCTCTGTGAG
TCGATCAACCGCAACCAGTTTTATTGTTGTGTGGGAATCCTGCTCAAGTT
AGTTGTTGTTGAGATGTTTTTCACGCGGCTTATTACAATGTCCAAAACCT
CCTAA
back to top

Coding sequence (CDS) from alignment at A-nodosum_M_contig1240:83017..83221+

>mRNA_A-nodosum_M_contig1240.14.1 ID=mRNA_A-nodosum_M_contig1240.14.1|Name=mRNA_A-nodosum_M_contig1240.14.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=105bp|location=Sequence derived from alignment at A-nodosum_M_contig1240:83017..83221+ (Ascophyllum nodosum dioecious)
ATGGAGGACCGCAACCAGTTTTATTGTTGTGTGGGAATCCTGCTCAAGTT
AGTTGTTGTTGAGATGTTTTTCACGCGGCTTATTACAATGTCCAAAACCT
CCTAA
back to top