mRNA_A-nodosum_M_contig124.22.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig124.22.1
Unique NamemRNA_A-nodosum_M_contig124.22.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig124.22.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig124contigA-nodosum_M_contig124:350108..350480 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size154
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Cds size111
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866666.6633787-UTR-A-nodosum_M_contig124:350107..3501501680866666.6633787-UTR-A-nodosum_M_contig124:350107..350150Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig124 350108..350150 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866666.6744118-CDS-A-nodosum_M_contig124:350150..3501871680866666.6744118-CDS-A-nodosum_M_contig124:350150..350187Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig124 350151..350187 -
1680866666.6827905-CDS-A-nodosum_M_contig124:350406..3504801680866666.6827905-CDS-A-nodosum_M_contig124:350406..350480Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig124 350407..350480 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig124.22.1prot_A-nodosum_M_contig124.22.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig124 350151..350480 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig124.22.1

>prot_A-nodosum_M_contig124.22.1 ID=prot_A-nodosum_M_contig124.22.1|Name=mRNA_A-nodosum_M_contig124.22.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=37bp
AKEGRESTFSYPRSWDIVIDPSLSLAYQVARRQDRP*
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mRNA from alignment at A-nodosum_M_contig124:350108..350480-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig124.22.1 ID=mRNA_A-nodosum_M_contig124.22.1|Name=mRNA_A-nodosum_M_contig124.22.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=373bp|location=Sequence derived from alignment at A-nodosum_M_contig124:350108..350480- (Ascophyllum nodosum dioecious)
GCCAAAGAAGGAAGGGAAAGCACATTCTCTTATCCAAGATCTTGGGACAT
CGTCATCGATCCCAGCCTTTCTCTGTGAGAGGATCTCTATGCGCACGGTT
GCGTGTTCCTACCCGTCGGTGCAGGAGTTCTCTCAGCATCATGTATGATG
TACATACTGCATGCGTACCCTAGACTGTACAGTAAAGGTTATAAAAGCTA
CGACAATTAATAGTGTCAACCAAGGGGCCACTGACTGACTGTCCAGCTCT
CTCGTTTTCGCCCGCAAACTTCTGCTTTGTACGTATCAAACAGCGCGTAC
CAGGTAGCCAGACGGCAGGACCGGCCTTGAAGTACTGTACAGTATAACTT
TGTCGTCCGGAAGAGAGTGACCG
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Coding sequence (CDS) from alignment at A-nodosum_M_contig124:350108..350480-

>mRNA_A-nodosum_M_contig124.22.1 ID=mRNA_A-nodosum_M_contig124.22.1|Name=mRNA_A-nodosum_M_contig124.22.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=111bp|location=Sequence derived from alignment at A-nodosum_M_contig124:350108..350480- (Ascophyllum nodosum dioecious)
GCCAAAGAAGGAAGGGAAAGCACATTCTCTTATCCAAGATCTTGGGACAT
CGTCATCGATCCCAGCCTTTCTCTCGCGTACCAGGTAGCCAGACGGCAGG
ACCGGCCTTGA
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