mRNA_A-nodosum_M_contig1238.5.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig1238.5.1
Unique NamemRNA_A-nodosum_M_contig1238.5.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1238.5.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig1238contigA-nodosum_M_contig1238:205927..207696 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7G985
Model size1469
Max annot lvl2880.D7G985|-
Hectar predicted targeting categoryother localisation
Exons2
Evalue0.000189
EggNOG OGs29ZCP@1|root,2RXW0@2759|Eukaryota
Cds size999
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866664.884062-UTR-A-nodosum_M_contig1238:205926..2059721680866664.884062-UTR-A-nodosum_M_contig1238:205926..205972Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig1238 205927..205972 +
1680866664.9559872-UTR-A-nodosum_M_contig1238:206971..2069751680866664.9559872-UTR-A-nodosum_M_contig1238:206971..206975Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig1238 206972..206975 +
1680866664.9650896-UTR-A-nodosum_M_contig1238:207276..2076961680866664.9650896-UTR-A-nodosum_M_contig1238:207276..207696Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig1238 207277..207696 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866664.8967054-CDS-A-nodosum_M_contig1238:205972..2069711680866664.8967054-CDS-A-nodosum_M_contig1238:205972..206971Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1238 205973..206971 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig1238.5.1prot_A-nodosum_M_contig1238.5.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig1238 205973..206971 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig1238.5.1

>prot_A-nodosum_M_contig1238.5.1 ID=prot_A-nodosum_M_contig1238.5.1|Name=mRNA_A-nodosum_M_contig1238.5.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=333bp
MVDVNSRKCRTEGCGKQPSFGVAGTKTKEYCAQHAPEGMVDVKNTKCRTE
GCGKEPSYGVAGTKTVEYCSQHAPDGMANVKNTKCRTEGCARIPSFGVDS
TRMAKYCAQHALDGMVDVNHRKCRTGGCGKLPWFGVAGSKTVGYCVHHAP
VGMIDVKNKKGRTEGGGKQPSFGVEGTKTVEYCAPFAPNGMVDAFSRNST
TGACGKQPSFGVANTRTAEHCAQNARLKCGVKGYREREVDPHHCGKGPIG
NVFQSGDKHTAVHPFLPQTSTPSGGRRGSRKRACPPEVMSTASKRAVARV
SAGGAVTMPDIDGQKSPVKRDSSLKTEVQLFC*
back to top

mRNA from alignment at A-nodosum_M_contig1238:205927..207696+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig1238.5.1 ID=mRNA_A-nodosum_M_contig1238.5.1|Name=mRNA_A-nodosum_M_contig1238.5.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=1770bp|location=Sequence derived from alignment at A-nodosum_M_contig1238:205927..207696+ (Ascophyllum nodosum dioecious)
AGGTACGAAAACTGCGGAGTACTGTGCTCAGCACGCACCGGACGGGATGG
TCGACGTCAACAGCAGAAAGTGCAGAACCGAAGGCTGCGGCAAGCAGCCG
TCGTTCGGAGTGGCAGGTACGAAAACTAAGGAGTACTGTGCACAGCACGC
GCCGGAAGGGATGGTCGACGTCAAGAACACCAAGTGCAGAACCGAAGGTT
GCGGCAAGGAGCCATCGTATGGTGTGGCAGGTACTAAAACTGTGGAGTAC
TGTTCACAGCACGCACCGGACGGAATGGCCAACGTCAAGAACACCAAGTG
CAGAACCGAAGGATGCGCAAGAATTCCGTCGTTCGGAGTGGACAGCACAA
GAATGGCAAAATACTGTGCACAACACGCCTTGGACGGGATGGTCGACGTC
AACCACAGAAAGTGCAGAACTGGAGGTTGCGGCAAGCTTCCGTGGTTTGG
AGTGGCAGGTTCAAAAACGGTTGGGTACTGTGTACACCACGCCCCCGTAG
GGATGATCGATGTTAAGAACAAGAAGGGCAGAACTGAAGGCGGCGGCAAG
CAACCGTCGTTTGGGGTGGAAGGTACAAAGACGGTTGAGTACTGTGCACC
TTTCGCCCCGAACGGGATGGTCGATGCCTTCAGCAGAAATAGCACAACCG
GAGCCTGCGGCAAGCAGCCGTCGTTCGGAGTGGCCAACACAAGAACGGCG
GAGCACTGTGCTCAGAACGCCAGGCTAAAATGCGGTGTCAAAGGATACAG
GGAGAGAGAGGTTGATCCACACCATTGTGGGAAGGGACCCATAGGTAACG
TATTTCAGAGTGGCGATAAACATACAGCCGTCCATCCTTTTCTTCCCCAA
ACAAGTACTCCGTCGGGTGGTAGACGGGGCTCTCGTAAGCGAGCATGCCC
CCCAGAAGTTATGTCTACAGCCTCGAAGCGAGCTGTCGCACGAGTTTCGG
CTGGAGGAGCGGTGACTATGCCGGATATCGACGGGCAAAAATCTCCCGTC
AAACGAGACTCTTCTTTAAAGACGGAGGTGCAGCTCTTCTGTTAGCCAGG
TACACCACGCGTAACAGCATGTTTAATTTGCTTTACTATGATACTTTATA
CTGTCATACTACGATTCCGGCGACCGTAGCTCATTCTTTGATTTTTCTTT
TTGTTTAAACTGAAATAGTAACTCGTCTCGTTCGTGAATCTTACGTTGTG
TTTGGTCGCAACGCTGTGAGTTCAGCTCAAGGGCCCCTCTTCCTCTTAGG
CGCTCAAGACCCCTCAGCTGCAACCATTTCTTCACGAAACACGTCACTCG
TGCTTACCCCCACGACCCTGTTATATCGTTCGTCCGTCTTTCGAACTTAG
GTGCTGTGGTCAAGAGCGTGGTCATGATCTTTATACTGTGACCGCCGAGA
CGCTAATGGGTATGGTGAGGGTCCTACCGTCCGTACCTCTGGAACAGCTT
CATCCATTTACATTTGTTACCTTCCATGCCAGGCATTCACACACTTCTGT
TACGTCCTTGAACTGCCGGTTAGGTACTTAAGAAGTCCTGGTGTAGCGAC
AGAGAAGTACCGGTAGGTGGCACCGAGCTTGAGGACGATGCTACGGAGGA
TAACCCTGATTCCGATTTTGATTGGGGCCAGCGTTTGTTTTTGTACAGTG
GTCGCCGCAATTGCGTACTCGTCTGACAAATGTATGAGGAGTTAACTATA
CTGTTTGAAATTCAGCCACGAACTATTTTAGGCTCACATCGTACGGGCGG
TATACACATACAACACTGCG
back to top

Coding sequence (CDS) from alignment at A-nodosum_M_contig1238:205927..207696+

>mRNA_A-nodosum_M_contig1238.5.1 ID=mRNA_A-nodosum_M_contig1238.5.1|Name=mRNA_A-nodosum_M_contig1238.5.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=999bp|location=Sequence derived from alignment at A-nodosum_M_contig1238:205927..207696+ (Ascophyllum nodosum dioecious)
ATGGTCGACGTCAACAGCAGAAAGTGCAGAACCGAAGGCTGCGGCAAGCA
GCCGTCGTTCGGAGTGGCAGGTACGAAAACTAAGGAGTACTGTGCACAGC
ACGCGCCGGAAGGGATGGTCGACGTCAAGAACACCAAGTGCAGAACCGAA
GGTTGCGGCAAGGAGCCATCGTATGGTGTGGCAGGTACTAAAACTGTGGA
GTACTGTTCACAGCACGCACCGGACGGAATGGCCAACGTCAAGAACACCA
AGTGCAGAACCGAAGGATGCGCAAGAATTCCGTCGTTCGGAGTGGACAGC
ACAAGAATGGCAAAATACTGTGCACAACACGCCTTGGACGGGATGGTCGA
CGTCAACCACAGAAAGTGCAGAACTGGAGGTTGCGGCAAGCTTCCGTGGT
TTGGAGTGGCAGGTTCAAAAACGGTTGGGTACTGTGTACACCACGCCCCC
GTAGGGATGATCGATGTTAAGAACAAGAAGGGCAGAACTGAAGGCGGCGG
CAAGCAACCGTCGTTTGGGGTGGAAGGTACAAAGACGGTTGAGTACTGTG
CACCTTTCGCCCCGAACGGGATGGTCGATGCCTTCAGCAGAAATAGCACA
ACCGGAGCCTGCGGCAAGCAGCCGTCGTTCGGAGTGGCCAACACAAGAAC
GGCGGAGCACTGTGCTCAGAACGCCAGGCTAAAATGCGGTGTCAAAGGAT
ACAGGGAGAGAGAGGTTGATCCACACCATTGTGGGAAGGGACCCATAGGT
AACGTATTTCAGAGTGGCGATAAACATACAGCCGTCCATCCTTTTCTTCC
CCAAACAAGTACTCCGTCGGGTGGTAGACGGGGCTCTCGTAAGCGAGCAT
GCCCCCCAGAAGTTATGTCTACAGCCTCGAAGCGAGCTGTCGCACGAGTT
TCGGCTGGAGGAGCGGTGACTATGCCGGATATCGACGGGCAAAAATCTCC
CGTCAAACGAGACTCTTCTTTAAAGACGGAGGTGCAGCTCTTCTGTTAG
back to top