mRNA_A-nodosum_M_contig1236.1.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig1236.1.1
Unique NamemRNA_A-nodosum_M_contig1236.1.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1236.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig1236contigA-nodosum_M_contig1236:32320..35034 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size2419
Hectar predicted targeting categoryother localisation
Exons2
Cds size1581
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866664.2408512-UTR-A-nodosum_M_contig1236:32319..324891680866664.2408512-UTR-A-nodosum_M_contig1236:32319..32489Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig1236 32320..32489 +
1680866664.2692266-UTR-A-nodosum_M_contig1236:34070..340741680866664.2692266-UTR-A-nodosum_M_contig1236:34070..34074Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig1236 34071..34074 +
1680866664.2783089-UTR-A-nodosum_M_contig1236:34370..350341680866664.2783089-UTR-A-nodosum_M_contig1236:34370..35034Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig1236 34371..35034 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866664.2586672-CDS-A-nodosum_M_contig1236:32489..340701680866664.2586672-CDS-A-nodosum_M_contig1236:32489..34070Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1236 32490..34070 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig1236.1.1prot_A-nodosum_M_contig1236.1.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig1236 32490..34070 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig1236.1.1

>prot_A-nodosum_M_contig1236.1.1 ID=prot_A-nodosum_M_contig1236.1.1|Name=mRNA_A-nodosum_M_contig1236.1.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=527bp
MSSEVAGKKTAESCTQDAPNGMVNVCRRKCQSKGCSKLPHFGVIGTKTAE
YCSQHAADGMVDVRNRRCAIEGCGTRPYFGVTGTKIAEYCAKHAADGMVD
VINKRCKIEGCDTQPSFGVAGTKRVEYCAQHAPNEMVDVKGRKCRTEGCG
KGATFGVACSRIAEYCAQHALVEMVDVKSRKCRTEGCDKYPSFGVAGSRK
VEYCGQHAPYGMVNVKDRRRCRSEGCRKHPSLGVAGTKTAEYCAQHAPDG
MVDVKSKKCRTEDCGKVPSYGVLGTTKLLYCAQHAPDEMVDVKDRQKCRT
LHCRKYPSFGVAGTKKAEHCAQHAPDGMVNVKNKKCRTEGCNKIPSFGVV
GTRTAEYCAQHAPREMVAVTGRKKCKTQHCGNVPEFGVAGTKSAEHCEQH
APDGMVYIKSRKYRTNGCGKLGVAGISLTEYCVQQTRPTHGVKRHRMSGV
KREIVQPYPAQASSPSGGSRGSRKRERHLDIASTASTRALSGRESAARAI
IMPEIDGQNYPVKRDHLVKTDVQLSV*
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mRNA from alignment at A-nodosum_M_contig1236:32320..35034+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig1236.1.1 ID=mRNA_A-nodosum_M_contig1236.1.1|Name=mRNA_A-nodosum_M_contig1236.1.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=2715bp|location=Sequence derived from alignment at A-nodosum_M_contig1236:32320..35034+ (Ascophyllum nodosum dioecious)
GGACAAGAGGTTCAACGTTCCAAGCAACAGAATTTGCGAAGCCTAAAACT
GCAGCTGGGTTCCATGGTTCGGAGTTAAAGCTAAAGCTAGCACCGAATAC
TCGCGTGCCCTGGACGGGGTGGTCGATGTGTATAGTATAAAAGTGCTGAA
TATAAAGCTGTGGCAAGCGGATGTCTTCTGAAGTGGCTGGCAAGAAAACA
GCGGAGTCATGTACACAGGACGCACCGAACGGGATGGTAAACGTCTGCCG
TCGCAAGTGCCAATCTAAAGGATGCAGTAAGCTGCCGCACTTCGGAGTGA
TTGGAACGAAAACAGCTGAATACTGTTCACAGCACGCAGCTGATGGGATG
GTCGACGTGAGGAACAGAAGGTGCGCAATCGAAGGATGCGGTACGCGACC
ATACTTCGGAGTGACAGGAACGAAAATAGCGGAGTACTGTGCGAAGCACG
CAGCTGATGGGATGGTCGACGTCATAAACAAAAGGTGCAAAATTGAAGGC
TGCGACACACAACCGTCATTCGGAGTGGCTGGCACAAAAAGAGTGGAGTA
CTGTGCACAGCACGCCCCAAACGAGATGGTTGACGTGAAGGGCAGAAAGT
GCAGAACCGAAGGCTGCGGCAAGGGAGCGACGTTCGGAGTGGCCTGCTCA
AGAATAGCGGAGTACTGTGCACAGCATGCTCTGGTTGAGATGGTGGACGT
GAAGAGCAGAAAGTGCAGAACCGAAGGCTGTGACAAGTACCCGTCGTTTG
GAGTGGCCGGCTCAAGGAAGGTGGAGTACTGTGGGCAGCATGCTCCTTAT
GGCATGGTGAACGTCAAGGACAGGAGGAGGTGCAGAAGCGAAGGCTGCCG
TAAGCATCCGTCCCTTGGGGTTGCCGGCACGAAAACAGCGGAGTACTGTG
CACAGCACGCCCCGGACGGTATGGTCGACGTGAAAAGCAAAAAGTGCAGA
ACCGAAGACTGCGGTAAGGTCCCGTCGTATGGAGTTCTCGGCACAACGAA
GCTGTTGTACTGTGCCCAGCACGCTCCTGATGAGATGGTCGACGTCAAGG
ACAGGCAGAAGTGCAGAACCCTACACTGCCGCAAGTATCCGTCGTTCGGA
GTGGCCGGCACGAAAAAAGCGGAGCACTGTGCACAGCACGCGCCGGACGG
GATGGTCAACGTCAAGAACAAAAAGTGTAGAACCGAAGGCTGCAACAAGA
TCCCGTCGTTCGGAGTGGTCGGCACAAGGACGGCGGAGTACTGTGCACAG
CACGCTCCTCGTGAGATGGTTGCCGTCACAGGCAGGAAGAAGTGTAAAAC
CCAACACTGCGGCAATGTCCCAGAGTTCGGAGTGGCCGGCACAAAGTCAG
CGGAGCACTGTGAACAGCACGCCCCGGATGGGATGGTCTATATCAAGAGC
AGAAAGTACAGAACCAATGGCTGCGGTAAGCTCGGCGTTGCTGGGATAAG
TTTGACGGAGTACTGTGTACAGCAAACCAGACCAACACACGGAGTCAAAA
GGCATAGGATGAGTGGCGTTAAACGGGAAATCGTTCAGCCTTATCCCGCC
CAGGCAAGCTCTCCGTCGGGTGGTAGCCGAGGTTCTCGTAAGCGAGAACG
GCATCTAGACATTGCGTCTACGGCTTCGACGAGAGCTTTATCAGGACGAG
AGTCGGCTGCAAGAGCGATAATTATGCCGGAGATCGACGGGCAAAACTAT
CCCGTCAAGCGAGATCATTTAGTCAAGACGGATGTGCAGCTCTCTGTGTA
GTCAGGTAAATTATTATTACGCCTATCCGGAAGCCCATCTCGTTTAATAC
CAGAGCTGTGACGATTCCGGCGCCCCGAGCTCATTTAAAGGCTTTTTCGT
TTTTCCAGATTTAGGAAGTTCCTCTTATCGTTTATAGATCTCGCGTTGTG
TATCGTCGTGGAGATGCGAGTTTAGCTCAGGGCCCCTTTCATTTCAGACC
ACCAAGGTCTTTCAGTTGCAGCCATTCTCCGACGACGCACTTCACCGCTC
ATGCTTAGCCTCAAGACCTTGCGCTATCGTTATTCCGTCTTTCGGGCCCA
GGTGTTCTGATCAAGAACATGGCAACCATACCTATAATTTTGCCGCCCAG
ACGCTGGGTCCGGTGAGAGTCCTACCGTGCGCGCCGCTGGAACTCCTTCA
TGCATTTTTTTGTTTTATCATTGACCGTCGAACTGTTTACTTGTTCCTCT
ATATAAGTGTCGCTTCCCATAGCAGGCACGCATATATTTTTGTTCGGTTC
TGAAATTACCGGTAGTGTACAATTGTAGTAGTCCTATTGTGGCGACAAAG
AAGCACTTAAAGGTGGTAACGGACCTGAGGACGATGCTTTGGAAGATTTC
CTTAAGAGGGATAATATCTTAAGCCGTTTCCGATTCTAAGGGGGCGAGTT
TTTGGTTCGGTACAACAGTCGTCGCGAATGCGTGCCCCTCTTCCAAATCG
ATAAATAGTCAATCTTTGAAATCTTTCTGTTCTAAGTTAGCTTCAAAATT
GGCTGGTATGTTATTGCTACGGATGAATAATGGCACGATTTATCTCTTTC
GCGCCCGAGAGAATACTGGAATTGTATCTGTCCTTTACACTGATTCTGTT
TACATGTTGGTAATATAAATATCAATCTTTGACTACCCGAGTGGTCTAGT
AGGTAAGCTGCACATCTGCTAGTACGGAAGTCGTGAGTTCGATTCTTACC
AAAGTAGGATTTGTG
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Coding sequence (CDS) from alignment at A-nodosum_M_contig1236:32320..35034+

>mRNA_A-nodosum_M_contig1236.1.1 ID=mRNA_A-nodosum_M_contig1236.1.1|Name=mRNA_A-nodosum_M_contig1236.1.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=1581bp|location=Sequence derived from alignment at A-nodosum_M_contig1236:32320..35034+ (Ascophyllum nodosum dioecious)
ATGTCTTCTGAAGTGGCTGGCAAGAAAACAGCGGAGTCATGTACACAGGA
CGCACCGAACGGGATGGTAAACGTCTGCCGTCGCAAGTGCCAATCTAAAG
GATGCAGTAAGCTGCCGCACTTCGGAGTGATTGGAACGAAAACAGCTGAA
TACTGTTCACAGCACGCAGCTGATGGGATGGTCGACGTGAGGAACAGAAG
GTGCGCAATCGAAGGATGCGGTACGCGACCATACTTCGGAGTGACAGGAA
CGAAAATAGCGGAGTACTGTGCGAAGCACGCAGCTGATGGGATGGTCGAC
GTCATAAACAAAAGGTGCAAAATTGAAGGCTGCGACACACAACCGTCATT
CGGAGTGGCTGGCACAAAAAGAGTGGAGTACTGTGCACAGCACGCCCCAA
ACGAGATGGTTGACGTGAAGGGCAGAAAGTGCAGAACCGAAGGCTGCGGC
AAGGGAGCGACGTTCGGAGTGGCCTGCTCAAGAATAGCGGAGTACTGTGC
ACAGCATGCTCTGGTTGAGATGGTGGACGTGAAGAGCAGAAAGTGCAGAA
CCGAAGGCTGTGACAAGTACCCGTCGTTTGGAGTGGCCGGCTCAAGGAAG
GTGGAGTACTGTGGGCAGCATGCTCCTTATGGCATGGTGAACGTCAAGGA
CAGGAGGAGGTGCAGAAGCGAAGGCTGCCGTAAGCATCCGTCCCTTGGGG
TTGCCGGCACGAAAACAGCGGAGTACTGTGCACAGCACGCCCCGGACGGT
ATGGTCGACGTGAAAAGCAAAAAGTGCAGAACCGAAGACTGCGGTAAGGT
CCCGTCGTATGGAGTTCTCGGCACAACGAAGCTGTTGTACTGTGCCCAGC
ACGCTCCTGATGAGATGGTCGACGTCAAGGACAGGCAGAAGTGCAGAACC
CTACACTGCCGCAAGTATCCGTCGTTCGGAGTGGCCGGCACGAAAAAAGC
GGAGCACTGTGCACAGCACGCGCCGGACGGGATGGTCAACGTCAAGAACA
AAAAGTGTAGAACCGAAGGCTGCAACAAGATCCCGTCGTTCGGAGTGGTC
GGCACAAGGACGGCGGAGTACTGTGCACAGCACGCTCCTCGTGAGATGGT
TGCCGTCACAGGCAGGAAGAAGTGTAAAACCCAACACTGCGGCAATGTCC
CAGAGTTCGGAGTGGCCGGCACAAAGTCAGCGGAGCACTGTGAACAGCAC
GCCCCGGATGGGATGGTCTATATCAAGAGCAGAAAGTACAGAACCAATGG
CTGCGGTAAGCTCGGCGTTGCTGGGATAAGTTTGACGGAGTACTGTGTAC
AGCAAACCAGACCAACACACGGAGTCAAAAGGCATAGGATGAGTGGCGTT
AAACGGGAAATCGTTCAGCCTTATCCCGCCCAGGCAAGCTCTCCGTCGGG
TGGTAGCCGAGGTTCTCGTAAGCGAGAACGGCATCTAGACATTGCGTCTA
CGGCTTCGACGAGAGCTTTATCAGGACGAGAGTCGGCTGCAAGAGCGATA
ATTATGCCGGAGATCGACGGGCAAAACTATCCCGTCAAGCGAGATCATTT
AGTCAAGACGGATGTGCAGCTCTCTGTGTAG
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