mRNA_A-nodosum_M_contig123.73.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig123.73.1
Unique NamemRNA_A-nodosum_M_contig123.73.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
[Close]
BLAST of mRNA_A-nodosum_M_contig123.73.1 vs. uniprot
Match: D7FQY7_ECTSI (Ubiquitin-conjugating enzyme n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQY7_ECTSI)

HSP 1 Score: 84.0 bits (206), Expect = 6.680e-15
Identity = 59/142 (41.55%), Postives = 75/142 (52.82%), Query Frame = 3 
Query:  213 ARASNSGYFFQATPEHPSKIAESLEALTSLRGGEDSDEVSVLTLLVRVFLPSFRRESEATKGVLDLKAGGLMRRISRLMSRILRNVRGFAGSTGAKDVSGTGAGAITEGGKKGXXXXXXKQATDSHLQTTYRPGNANYRIQK 638
            AR+ N G   Q    H     E+   +  +RGG D D  S+ TL +RV +P FRR+ +   G LDL+ GGLMRR+ RL+S + R VRG        +  G      T+   KG         T SHL+ TYRPGNANYRIQK
Sbjct:   47 ARSCNPGPTTQGESGHGEDALETFALV--VRGGSDEDP-SLTTLFMRVLMPGFRRD-KGGDGELDLEGGGLMRRLKRLVSGVFRKVRGSP--VPITEPKGEAKNVATKKKSKGKAKGA---TTTSHLEKTYRPGNANYRIQK 179
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig123.73.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FQY7_ECTSI6.680e-1541.55Ubiquitin-conjugating enzyme n=1 Tax=Ectocarpus si... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig123contigA-nodosum_M_contig123:587409..589072 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FQY7
Preferred nameUBC17
PFAMsUQ_con
Model size908
Max annot lvl2759|Eukaryota
KEGG rclassRC00064,RC00141
KEGG koko:K01446,ko:K10688,ko:K13963,ko:K19589,ko:K20182
KEGG ReactionR04112
KEGG Pathwayko04120,ko04138,ko05146,map04120,map04138,map05146
Hectar predicted targeting categorysignal peptide
GOsGO:0000209,GO:0001101,GO:0003674,GO:0003824,GO:0004842,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0006464,GO:0006508,GO:0006511,GO:0006513,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009719,GO:0009725,GO:0009739,GO:0009987,GO:0010033,GO:0010498,GO:0016567,GO:0016740,GO:0019538,GO:0019787,GO:0019899,GO:0019941,GO:0030163,GO:0031625,GO:0032446,GO:0033993,GO:0036211,GO:0042221,GO:0043161,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043632,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044389,GO:0044424,GO:0044464,GO:0050896,GO:0051603,GO:0061630,GO:0061659,GO:0070647,GO:0071704,GO:0140096,GO:1901564,GO:1901565,GO:1901575,GO:1901700
Exons3
Evalue2.12e-16
EggNOG OGsCOG5078@1|root,KOG0427@2759|Eukaryota
Ec32 ortholog descriptionUbiquitin-conjugating enzyme
Ec32 orthologEc-09_003260.1
EC2.1.1.297,2.3.2.25
Descriptionprotein polyubiquitination
Cds size657
COG categoryO
BRITEko00000,ko00001,ko01000,ko03012,ko04121,ko04131
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866660.5297267-UTR-A-nodosum_M_contig123:587408..5876241680866660.5297267-UTR-A-nodosum_M_contig123:587408..587624Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig123 587409..587624 -
1680866660.5758307-UTR-A-nodosum_M_contig123:589037..5890721680866660.5758307-UTR-A-nodosum_M_contig123:589037..589072Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig123 589038..589072 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866660.5492024-CDS-A-nodosum_M_contig123:587624..5878151680866660.5492024-CDS-A-nodosum_M_contig123:587624..587815Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig123 587625..587815 -
1680866660.5584261-CDS-A-nodosum_M_contig123:588163..5884191680866660.5584261-CDS-A-nodosum_M_contig123:588163..588419Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig123 588164..588419 -
1680866660.5670605-CDS-A-nodosum_M_contig123:588827..5890371680866660.5670605-CDS-A-nodosum_M_contig123:588827..589037Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig123 588828..589037 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig123.73.1prot_A-nodosum_M_contig123.73.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig123 587625..589037 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig123.73.1

>prot_A-nodosum_M_contig123.73.1 ID=prot_A-nodosum_M_contig123.73.1|Name=mRNA_A-nodosum_M_contig123.73.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=219bp
MMSGATLVVLFFLWPSTSARCGGKTRSTFGVGLPRLPQCLPLSTSTRRAA
RRGLADHLQARASNSGYFFQATPEHPSKIAESLEALTSLRGGEDSDEVSV
LTLLVRVFLPSFRRESEATKGVLDLKAGGLMRRISRLMSRILRNVRGFAG
STGAKDVSGTGAGAITEGGKKGKGKGKGKQATDSHLQTTYRPGNANYRIQ
KVGWTPPLNASTSDTFTV*
back to top

mRNA from alignment at A-nodosum_M_contig123:587409..589072-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig123.73.1 ID=mRNA_A-nodosum_M_contig123.73.1|Name=mRNA_A-nodosum_M_contig123.73.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=1664bp|location=Sequence derived from alignment at A-nodosum_M_contig123:587409..589072- (Ascophyllum nodosum dioecious)
CCAGAGTGCGTTGATATACTGCCCCCGACAGAACGATGATGAGCGGAGCT
ACTCTGGTGGTGTTGTTCTTCCTCTGGCCGTCTACATCGGCCCGATGCGG
AGGAAAGACTCGGAGCACCTTCGGGGTGGGACTGCCGCGATTGCCGCAGT
GTTTGCCTCTCTCTACCAGTACTCGAAGGGCGGCTAGGAGAGGGCTTGCG
GATCACCTCCAAGCTCGGGCAAGCAATAGCGGTTACTTCTTCCAGGCAAG
GCTGGATCCGTCTGATGGTCTTTAACGCTTCCTTTCCAACCTTCTTGGAT
TTGATCTGTCGATGGCGAGCAATGGGCGAGTCAGCGGTACTGCACGCCAC
CGCATGCTCGATCAGCCACGAATCCTTCGCACCGTGAATTCGTTTTTTCA
GAAAAGTAACAAACGTTTTCAGAAGCATTTGCAACCTCTGACCTCTGCGT
GAGGGCGGTTTCCTGCTTCCCGTTGCATTTTCAAAGCGTCTCAGTACTTC
TCGTGCGCATCGCACGGTGGCAAAAGTCACACAACCGACGGTAATGACTG
TATCTCACGGCGTATCATGGCTTGCCTTCTCGAAAGCGCGGCATTTTTCC
ATGGACATCGCCAACCTGCTCGAGCGCTTTCTTGTGGGCCCTGTATTTTT
CAGGCCACCCCGGAACACCCATCGAAAATAGCGGAGTCGCTCGAAGCCTT
GACGTCATTGCGTGGGGGAGAGGACAGCGATGAAGTGTCGGTTTTGACGC
TGTTGGTACGCGTCTTCTTACCGAGCTTTCGACGGGAAAGTGAAGCCACA
AAAGGGGTACTTGACTTAAAAGCGGGCGGATTGATGCGGCGAATATCGCG
ATTGATGTCCAGAATCCTGCGCAATGTACGAGGGTTCGCGGGGAGCACGG
GCGCAAAAGGTGGGCCCGCAAGAAGAGCCCGCATCATTTGGTTTGTTTTT
TCTCGTCCGCGCTGTACGATCGCCCGATAGCTGTTACTGCGCTTCTTCAG
CGCCGATGTTGCTGTGGGCTACGTTGAGACGACGCCTCACCTCGGGAACT
CCGTTTGGCAGCTTGGCGTAAAGCTACAATCAATACCATCGTCTTACAGC
GTAGAGCTTCTTGTTGAGATGACCAAGGTCCCTTGTTCAAGGTCCCTTCT
TCTCTTGTTGTCACTTTTACCGGCTGTAAAGGGTAAAGCCTCCCTTGTGT
CCGCCGGGCTCCCATTCGTGTGCCACTGTCTTGCCTCTTACACCCGTCCA
ACGCCAGATGTTTCAGGGACAGGGGCAGGGGCGATAACAGAGGGGGGCAA
GAAGGGGAAGGGAAAGGGAAAGGGAAAGCAAGCAACTGATTCTCACCTTC
AGACGACGTATCGACCTGGCAACGCCAACTATCGTATACAGAAGGTTGGT
TGGACTCCCCCGCTGAACGCCTCGACCAGCGATACGTTTACAGTATAATA
TGTTCGGACGTCACCCTGCGGTGTGTGGCGTGCCTCTTGGAGCGTAGCTG
TTATAGGGTCGACTCCGAGGACGGTGTCTCCCGGCGCGTAAACGTGTGTG
TCTTGACAAGTCTTACTACCTCCGTCCATATTTCGGGCTTTGCCCCGGCT
TAGAGCTTTCTTGCGAAAAATCTCGCGAAGCCCTTTGGCGCAAAGAGCGA
TCGTTGGAAGCCTT
back to top

Coding sequence (CDS) from alignment at A-nodosum_M_contig123:587409..589072-

>mRNA_A-nodosum_M_contig123.73.1 ID=mRNA_A-nodosum_M_contig123.73.1|Name=mRNA_A-nodosum_M_contig123.73.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=657bp|location=Sequence derived from alignment at A-nodosum_M_contig123:587409..589072- (Ascophyllum nodosum dioecious)
ATGATGAGCGGAGCTACTCTGGTGGTGTTGTTCTTCCTCTGGCCGTCTAC
ATCGGCCCGATGCGGAGGAAAGACTCGGAGCACCTTCGGGGTGGGACTGC
CGCGATTGCCGCAGTGTTTGCCTCTCTCTACCAGTACTCGAAGGGCGGCT
AGGAGAGGGCTTGCGGATCACCTCCAAGCTCGGGCAAGCAATAGCGGTTA
CTTCTTCCAGGCCACCCCGGAACACCCATCGAAAATAGCGGAGTCGCTCG
AAGCCTTGACGTCATTGCGTGGGGGAGAGGACAGCGATGAAGTGTCGGTT
TTGACGCTGTTGGTACGCGTCTTCTTACCGAGCTTTCGACGGGAAAGTGA
AGCCACAAAAGGGGTACTTGACTTAAAAGCGGGCGGATTGATGCGGCGAA
TATCGCGATTGATGTCCAGAATCCTGCGCAATGTACGAGGGTTCGCGGGG
AGCACGGGCGCAAAAGATGTTTCAGGGACAGGGGCAGGGGCGATAACAGA
GGGGGGCAAGAAGGGGAAGGGAAAGGGAAAGGGAAAGCAAGCAACTGATT
CTCACCTTCAGACGACGTATCGACCTGGCAACGCCAACTATCGTATACAG
AAGGTTGGTTGGACTCCCCCGCTGAACGCCTCGACCAGCGATACGTTTAC
AGTATAA
back to top