mRNA_A-nodosum_M_contig123.71.1 (mRNA) Ascophyllum nodosum dioecious
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Overview
Homology
BLAST of mRNA_A-nodosum_M_contig123.71.1 vs. uniprot
Match: D7FQY7_ECTSI (Ubiquitin-conjugating enzyme n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQY7_ECTSI) HSP 1 Score: 311 bits (796), Expect = 2.230e-102 Identity = 146/158 (92.41%), Postives = 153/158 (96.84%), Query Frame = 1
Query: 4 TDSHLQTTYRPGNANYRIQKELKEFLVNPPDGCKVSVGKNIRVWIITISGAEGTIYAGEKFRLRVAFPEDYPTKPPAVYFLQSPPPPKHQHIYTNGDICLSLLSSRDWKPNLTVMSLALSILSMLSSAKEKRIPEDNAAHADSRPGQAQQWIYHDDLC 477
T SHL+ TYRPGNANYRIQKELKEF+ NPPD CKVSVGKNIRVWIITISGAEGTIYAGEKFRLRV+FPE+YPTKPPAVYFLQSPPPPKHQHIYTNGDICLSLLSSRDWKPNLTVMSLALSILSMLSSAKEKR+PEDNA HA++RPGQAQQWIYHDDLC
Sbjct: 160 TTSHLEKTYRPGNANYRIQKELKEFMANPPDCCKVSVGKNIRVWIITISGAEGTIYAGEKFRLRVSFPEEYPTKPPAVYFLQSPPPPKHQHIYTNGDICLSLLSSRDWKPNLTVMSLALSILSMLSSAKEKRLPEDNATHAEARPGQAQQWIYHDDLC 317
BLAST of mRNA_A-nodosum_M_contig123.71.1 vs. uniprot
Match: A0A835ZFF1_9STRA (Ubiquitin-conjugating enzyme/RWD-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZFF1_9STRA) HSP 1 Score: 238 bits (606), Expect = 5.350e-73 Identity = 110/154 (71.43%), Postives = 135/154 (87.66%), Query Frame = 1
Query: 13 HLQTTYRPGNANYRIQKELKEFLVNPPDGCKVSVGKNIRVWIITISGAEGTIYAGEKFRLRVAFPEDYPTKPPAVYFLQSPPPPKHQHIYTNGDICLSLLSSRDWKPNLTVMSLALSILSMLSSAKEKRIPEDNAAHADSRPGQAQQ-WIYHDD 471
HL + +RPG+ANYRIQKEL+EF+ NPP+GC+VSVGK+++VWIITI+GA+GTI+ GEKF+LRV FPE+YP KPP+VYFLQ PPPP+H+H+YTNGDICLSLL +DW PNLT +LALSILSMLSSAKEKR P DN +A+ RPGQ+Q WIYHD+
Sbjct: 214 HLASKHRPGDANYRIQKELQEFMKNPPEGCQVSVGKSLKVWIITITGAKGTIFEGEKFKLRVGFPENYPLKPPSVYFLQDPPPPEHEHVYTNGDICLSLLG-KDWTPNLTASALALSILSMLSSAKEKRRPADNFQNANRRPGQSQDSWIYHDN 366
BLAST of mRNA_A-nodosum_M_contig123.71.1 vs. uniprot
Match: A0A0G4GQN8_VITBC (UBC core domain-containing protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4GQN8_VITBC) HSP 1 Score: 223 bits (569), Expect = 1.350e-69 Identity = 102/160 (63.75%), Postives = 129/160 (80.62%), Query Frame = 1
Query: 1 ATDSHLQTTYRPGNANYRIQKELKEFLVNPPDGCKVSVGKNIRVWIITISGAEGTIYAGEKFRLRVAFPEDYPTKPPAVYFLQSPPPPKHQHIYTNGDICLSLLSSRDWKPNLTVMSLALSILSMLSSAKEKRIPEDNAAHADSRPG-QAQQWIYHDDLC 477
A HL+ ++RPG+ NYRIQKELK+FL PPD C+++VG NIRVWIIT++G EGT+Y GEK+RL++ FP +YP KPP +YFLQ P P+H H+Y+NGDICL+LL + DWKP LTV S+ALSILSMLSSAKEK++P DNA+HAD + G Q W+YHDD C
Sbjct: 50 AAKDHLRRSFRPGHVNYRIQKELKDFLTTPPDHCEIAVGSNIRVWIITLTGVEGTLYEGEKYRLKIVFPPEYPLKPPIIYFLQ--PTPRHPHVYSNGDICLNLLGT-DWKPTLTVASVALSILSMLSSAKEKKLPLDNASHADLKAGGQQHNWMYHDDKC 206
BLAST of mRNA_A-nodosum_M_contig123.71.1 vs. uniprot
Match: A0A0G4GVI6_9ALVE (UBC core domain-containing protein n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4GVI6_9ALVE) HSP 1 Score: 217 bits (553), Expect = 3.110e-67 Identity = 101/160 (63.12%), Postives = 127/160 (79.38%), Query Frame = 1
Query: 1 ATDSHLQTTYRPGNANYRIQKELKEFLVNPPDGCKVSVGKNIRVWIITISGAEGTIYAGEKFRLRVAFPEDYPTKPPAVYFLQSPPPPKHQHIYTNGDICLSLLSSRDWKPNLTVMSLALSILSMLSSAKEKRIPEDNAAHADSRPG-QAQQWIYHDDLC 477
AT +HL+ + PGN NYRIQKELKEF+ +PP C+VSVG N+R WIITI G EGT+Y E ++L+V FP++YP PP+VYFL+ P P+H H+YTNGDICL+LL + DWKP LTV ++AL+ILSMLSSAKEK+IP DNAAHA++ PG Q W+YHDD C
Sbjct: 46 ATSNHLKAKWTPGNPNYRIQKELKEFIKSPPPNCRVSVGSNLRAWIITIKGVEGTLYEKETYKLKVVFPDEYPLVPPSVYFLR--PAPRHPHVYTNGDICLNLLGT-DWKPTLTVSAIALAILSMLSSAKEKKIPLDNAAHAEAPPGGQQHNWMYHDDKC 202
BLAST of mRNA_A-nodosum_M_contig123.71.1 vs. uniprot
Match: W7U274_9STRA (Ubiquitin-conjugating enzyme n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7U274_9STRA) HSP 1 Score: 219 bits (559), Expect = 1.270e-66 Identity = 99/156 (63.46%), Postives = 130/156 (83.33%), Query Frame = 1
Query: 13 HLQTTYRPGNANYRIQKELKEFLVNPPDGCKVSVGKNIRVWIITISGAEGTIYAGEKFRLRVAFPEDYPTKPPAVYFLQSPPPPKHQHIYTNGDICLSLLSSRDWKPNLTVMSLALSILSMLSSAKEKRIPEDNAAHADSRPGQAQ-QWIYHDDLC 477
HL +R GNAN+R+QKEL+E+L NP + +V+VG NIRVW++T++GA+GTI+AGEK++L+ FP DYP+KPP+VYFLQ PPP+H+H+YTNGDICL+LL RDW+PN+T LALSILSMLSSA+EK+IP+DN HAD+ PG+ Q W+YHDD C
Sbjct: 162 HLGKEFRRGNANFRVQKELREWLANPTENLQVAVGDNIRVWVVTLTGAKGTIFAGEKYKLKFTFPMDYPSKPPSVYFLQ--PPPRHEHVYTNGDICLNLLG-RDWRPNMTASMLALSILSMLSSAREKKIPQDNHVHADNPPGKEQANWLYHDDRC 314
BLAST of mRNA_A-nodosum_M_contig123.71.1 vs. uniprot
Match: A0A7S1TYR4_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TYR4_9STRA) HSP 1 Score: 216 bits (550), Expect = 3.180e-66 Identity = 103/146 (70.55%), Postives = 121/146 (82.88%), Query Frame = 1
Query: 37 GNANYRIQKELKEFLVNPPDGCKVSVGKNIRVWIITISGAEGTIYAGEKFRLRVAFPEDYPTKPPAVYFLQSPPPPKHQHIYTNGDICLSLLSSRDWKPNLTVMSLALSILSMLSSAKEKRIPEDNAAHADSRPGQAQQ-WIYHDD 471
GN YRIQKEL+EF+ NPP CKVSVG NIRVW +T++GAE T+Y GE+++LRV FP YPTKPP+VYFL+ PPPKH H+YTNGDICLSLL +DW+PNLT SLALSILSMLSSA+EKR+P DNA HADS PG+ Q W+YHDD
Sbjct: 98 GNPLYRIQKELREFVDNPPPNCKVSVGDNIRVWTVTLTGAEDTLYEGEEYKLRVTFPTGYPTKPPSVYFLK--PPPKHPHVYTNGDICLSLLG-KDWRPNLTASSLALSILSMLSSAREKRLPNDNAQHADSPPGKPQDGWMYHDD 240
BLAST of mRNA_A-nodosum_M_contig123.71.1 vs. uniprot
Match: A0A7S4RNY0_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4RNY0_9STRA) HSP 1 Score: 208 bits (529), Expect = 1.070e-61 Identity = 98/156 (62.82%), Postives = 122/156 (78.21%), Query Frame = 1
Query: 13 HLQTTYRPGNANYRIQKELKEFLVNPPDGCKVSVGKNIRVWIITISGAEGTIYAGEKFRLRVAFPEDYPTKPPAVYFLQSPPPPKHQHIYTNGDICLSLLSSRDWKPNLTVMSLALSILSMLSSAKEKRIPEDNAAHADSRPGQAQQ-WIYHDDLC 477
HL + + NYRIQKEL+ FL +PP V+VGKNIRVWI+TI+GA TIY GEK+RLR++FP +YPT PP+VYFL PP PKH+H+YTNGDICLSLL +DW+P +T SLA+SILS+LSSA+EK +P DNAAH+ ++PG Q WIYHDD C
Sbjct: 196 HLSAKLKSNSPNYRIQKELRAFLTSPPPNLSVAVGKNIRVWIVTITGASNTIYEGEKYRLRMSFPSNYPTSPPSVYFL--PPTPKHEHVYTNGDICLSLLG-KDWRPTMTGQSLAVSILSLLSSAREKSLPMDNAAHSQNKPGGNQDNWIYHDDNC 348
BLAST of mRNA_A-nodosum_M_contig123.71.1 vs. uniprot
Match: A0A7S2L3M3_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2L3M3_9STRA) HSP 1 Score: 207 bits (528), Expect = 1.640e-61 Identity = 97/160 (60.62%), Postives = 124/160 (77.50%), Query Frame = 1
Query: 1 ATDSHLQTTYRPGNANYRIQKELKEFLVNPPDGCKVSVGKNIRVWIITISGAEGTIYAGEKFRLRVAFPEDYPTKPPAVYFLQSPPPPKHQHIYTNGDICLSLLSSRDWKPNLTVMSLALSILSMLSSAKEKRIPEDNAAHADSRPGQAQQ-WIYHDDLC 477
A D HL+++ N NYRIQ+ELK F+ +PP+ V VGKNIRVWIIT++GA G+IY GEK+RL V FP++YP PP+VYFL P P+H+H+YTNGDICLSLL +DW+P +T S+ALSILS+LSSA K +P+DNAAHA ++PG AQ W+YHDD C
Sbjct: 195 AVDFHLKSSLSQNNPNYRIQQELKAFIKSPPENLSVKVGKNIRVWIITLTGATGSIYEGEKYRLHVKFPKNYPAAPPSVYFLN--PTPRHEHVYTNGDICLSLLG-KDWRPTMTAQSIALSILSILSSASHKALPQDNAAHAGAQPGLAQDDWVYHDDNC 351
BLAST of mRNA_A-nodosum_M_contig123.71.1 vs. uniprot
Match: B7FUS1_PHATC (Predicted protein n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7FUS1_PHATC) HSP 1 Score: 200 bits (509), Expect = 4.720e-61 Identity = 93/160 (58.13%), Postives = 122/160 (76.25%), Query Frame = 1
Query: 1 ATDSHLQTTYRPGNANYRIQKELKEFLVNPPDGCKVSVGKNIRVWIITISGAEGTIYAGEKFRLRVAFPEDYPTKPPAVYFLQSPPPPKHQHIYTNGDICLSLLSSRDWKPNLTVMSLALSILSMLSSAKEKRIPEDNAAHADSRPGQAQQ-WIYHDDLC 477
A D+HLQ + + NYRIQ+ELK FL +PP V VGKN+RVWI++I GA+GT+Y GE F+LR++FP YPT PP+VYFL P P H+H+YTNGDICLSLL +DW+P +T S+A+SILS+LSSA+ K +P DNA HA ++PG+ Q+ W+YHDD C
Sbjct: 12 AADAHLQAKLKSTSPNYRIQRELKAFLSDPPSNLSVKVGKNLRVWIVSIEGAKGTVYEGEIFKLRISFPPQYPTVPPSVYFLP-PSIPVHEHVYTNGDICLSLLG-KDWRPTMTAQSIAVSILSILSSAQSKSLPMDNARHAQNKPGEYQKDWVYHDDNC 169
BLAST of mRNA_A-nodosum_M_contig123.71.1 vs. uniprot
Match: A0A7S2R2N4_9STRA (Hypothetical protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2R2N4_9STRA) HSP 1 Score: 201 bits (511), Expect = 8.530e-61 Identity = 95/156 (60.90%), Postives = 119/156 (76.28%), Query Frame = 1
Query: 13 HLQTTYRPGNANYRIQKELKEFLVNPPDGCKVSVGKNIRVWIITISGAEGTIYAGEKFRLRVAFPEDYPTKPPAVYFLQSPPPPKHQHIYTNGDICLSLLSSRDWKPNLTVMSLALSILSMLSSAKEKRIPEDNAAHADSRPGQAQQ-WIYHDDLC 477
H+ + N NYRIQ+ELKEFL +PP KV+VGKNIRVWIIT+ GA+ TIY G+KFRLRV FP DYPT PP+VYFLQ P P+H+H+YTNGDICLSLL +DW+P +T S+A+SILS+LS A+ K +P DNA + ++PG Q W+YHDD C
Sbjct: 57 HIAKELKSNNPNYRIQRELKEFLKSPPPNLKVNVGKNIRVWIITLIGAKNTIYDGDKFRLRVQFPADYPTSPPSVYFLQ--PTPRHEHVYTNGDICLSLLG-KDWRPTMTAQSIAMSILSILSGAQRKSLPMDNARNCLNKPGAKQDDWVYHDDNC 209 The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig123.71.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_A-nodosum_M_contig123.71.1 >prot_A-nodosum_M_contig123.71.1 ID=prot_A-nodosum_M_contig123.71.1|Name=mRNA_A-nodosum_M_contig123.71.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=45bp MSLALSILSMLSSAKEKRIPEDNAAHADSRPGQAQQWIYHDDLC*back to top mRNA from alignment at A-nodosum_M_contig123:585254..587741- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_A-nodosum_M_contig123.71.1 ID=mRNA_A-nodosum_M_contig123.71.1|Name=mRNA_A-nodosum_M_contig123.71.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=2488bp|location=Sequence derived from alignment at A-nodosum_M_contig123:585254..587741- (Ascophyllum nodosum dioecious)back to top Coding sequence (CDS) from alignment at A-nodosum_M_contig123:585254..587741- >mRNA_A-nodosum_M_contig123.71.1 ID=mRNA_A-nodosum_M_contig123.71.1|Name=mRNA_A-nodosum_M_contig123.71.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=135bp|location=Sequence derived from alignment at A-nodosum_M_contig123:585254..587741- (Ascophyllum nodosum dioecious)back to top |