mRNA_A-nodosum_M_contig123.71.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig123.71.1
Unique NamemRNA_A-nodosum_M_contig123.71.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
BLAST of mRNA_A-nodosum_M_contig123.71.1 vs. uniprot
Match: D7FQY7_ECTSI (Ubiquitin-conjugating enzyme n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQY7_ECTSI)

HSP 1 Score: 311 bits (796), Expect = 2.230e-102
Identity = 146/158 (92.41%), Postives = 153/158 (96.84%), Query Frame = 1
Query:    4 TDSHLQTTYRPGNANYRIQKELKEFLVNPPDGCKVSVGKNIRVWIITISGAEGTIYAGEKFRLRVAFPEDYPTKPPAVYFLQSPPPPKHQHIYTNGDICLSLLSSRDWKPNLTVMSLALSILSMLSSAKEKRIPEDNAAHADSRPGQAQQWIYHDDLC 477
            T SHL+ TYRPGNANYRIQKELKEF+ NPPD CKVSVGKNIRVWIITISGAEGTIYAGEKFRLRV+FPE+YPTKPPAVYFLQSPPPPKHQHIYTNGDICLSLLSSRDWKPNLTVMSLALSILSMLSSAKEKR+PEDNA HA++RPGQAQQWIYHDDLC
Sbjct:  160 TTSHLEKTYRPGNANYRIQKELKEFMANPPDCCKVSVGKNIRVWIITISGAEGTIYAGEKFRLRVSFPEEYPTKPPAVYFLQSPPPPKHQHIYTNGDICLSLLSSRDWKPNLTVMSLALSILSMLSSAKEKRLPEDNATHAEARPGQAQQWIYHDDLC 317          
BLAST of mRNA_A-nodosum_M_contig123.71.1 vs. uniprot
Match: A0A835ZFF1_9STRA (Ubiquitin-conjugating enzyme/RWD-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZFF1_9STRA)

HSP 1 Score: 238 bits (606), Expect = 5.350e-73
Identity = 110/154 (71.43%), Postives = 135/154 (87.66%), Query Frame = 1
Query:   13 HLQTTYRPGNANYRIQKELKEFLVNPPDGCKVSVGKNIRVWIITISGAEGTIYAGEKFRLRVAFPEDYPTKPPAVYFLQSPPPPKHQHIYTNGDICLSLLSSRDWKPNLTVMSLALSILSMLSSAKEKRIPEDNAAHADSRPGQAQQ-WIYHDD 471
            HL + +RPG+ANYRIQKEL+EF+ NPP+GC+VSVGK+++VWIITI+GA+GTI+ GEKF+LRV FPE+YP KPP+VYFLQ PPPP+H+H+YTNGDICLSLL  +DW PNLT  +LALSILSMLSSAKEKR P DN  +A+ RPGQ+Q  WIYHD+
Sbjct:  214 HLASKHRPGDANYRIQKELQEFMKNPPEGCQVSVGKSLKVWIITITGAKGTIFEGEKFKLRVGFPENYPLKPPSVYFLQDPPPPEHEHVYTNGDICLSLLG-KDWTPNLTASALALSILSMLSSAKEKRRPADNFQNANRRPGQSQDSWIYHDN 366          
BLAST of mRNA_A-nodosum_M_contig123.71.1 vs. uniprot
Match: A0A0G4GQN8_VITBC (UBC core domain-containing protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4GQN8_VITBC)

HSP 1 Score: 223 bits (569), Expect = 1.350e-69
Identity = 102/160 (63.75%), Postives = 129/160 (80.62%), Query Frame = 1
Query:    1 ATDSHLQTTYRPGNANYRIQKELKEFLVNPPDGCKVSVGKNIRVWIITISGAEGTIYAGEKFRLRVAFPEDYPTKPPAVYFLQSPPPPKHQHIYTNGDICLSLLSSRDWKPNLTVMSLALSILSMLSSAKEKRIPEDNAAHADSRPG-QAQQWIYHDDLC 477
            A   HL+ ++RPG+ NYRIQKELK+FL  PPD C+++VG NIRVWIIT++G EGT+Y GEK+RL++ FP +YP KPP +YFLQ  P P+H H+Y+NGDICL+LL + DWKP LTV S+ALSILSMLSSAKEK++P DNA+HAD + G Q   W+YHDD C
Sbjct:   50 AAKDHLRRSFRPGHVNYRIQKELKDFLTTPPDHCEIAVGSNIRVWIITLTGVEGTLYEGEKYRLKIVFPPEYPLKPPIIYFLQ--PTPRHPHVYSNGDICLNLLGT-DWKPTLTVASVALSILSMLSSAKEKKLPLDNASHADLKAGGQQHNWMYHDDKC 206          
BLAST of mRNA_A-nodosum_M_contig123.71.1 vs. uniprot
Match: A0A0G4GVI6_9ALVE (UBC core domain-containing protein n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4GVI6_9ALVE)

HSP 1 Score: 217 bits (553), Expect = 3.110e-67
Identity = 101/160 (63.12%), Postives = 127/160 (79.38%), Query Frame = 1
Query:    1 ATDSHLQTTYRPGNANYRIQKELKEFLVNPPDGCKVSVGKNIRVWIITISGAEGTIYAGEKFRLRVAFPEDYPTKPPAVYFLQSPPPPKHQHIYTNGDICLSLLSSRDWKPNLTVMSLALSILSMLSSAKEKRIPEDNAAHADSRPG-QAQQWIYHDDLC 477
            AT +HL+  + PGN NYRIQKELKEF+ +PP  C+VSVG N+R WIITI G EGT+Y  E ++L+V FP++YP  PP+VYFL+  P P+H H+YTNGDICL+LL + DWKP LTV ++AL+ILSMLSSAKEK+IP DNAAHA++ PG Q   W+YHDD C
Sbjct:   46 ATSNHLKAKWTPGNPNYRIQKELKEFIKSPPPNCRVSVGSNLRAWIITIKGVEGTLYEKETYKLKVVFPDEYPLVPPSVYFLR--PAPRHPHVYTNGDICLNLLGT-DWKPTLTVSAIALAILSMLSSAKEKKIPLDNAAHAEAPPGGQQHNWMYHDDKC 202          
BLAST of mRNA_A-nodosum_M_contig123.71.1 vs. uniprot
Match: W7U274_9STRA (Ubiquitin-conjugating enzyme n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7U274_9STRA)

HSP 1 Score: 219 bits (559), Expect = 1.270e-66
Identity = 99/156 (63.46%), Postives = 130/156 (83.33%), Query Frame = 1
Query:   13 HLQTTYRPGNANYRIQKELKEFLVNPPDGCKVSVGKNIRVWIITISGAEGTIYAGEKFRLRVAFPEDYPTKPPAVYFLQSPPPPKHQHIYTNGDICLSLLSSRDWKPNLTVMSLALSILSMLSSAKEKRIPEDNAAHADSRPGQAQ-QWIYHDDLC 477
            HL   +R GNAN+R+QKEL+E+L NP +  +V+VG NIRVW++T++GA+GTI+AGEK++L+  FP DYP+KPP+VYFLQ  PPP+H+H+YTNGDICL+LL  RDW+PN+T   LALSILSMLSSA+EK+IP+DN  HAD+ PG+ Q  W+YHDD C
Sbjct:  162 HLGKEFRRGNANFRVQKELREWLANPTENLQVAVGDNIRVWVVTLTGAKGTIFAGEKYKLKFTFPMDYPSKPPSVYFLQ--PPPRHEHVYTNGDICLNLLG-RDWRPNMTASMLALSILSMLSSAREKKIPQDNHVHADNPPGKEQANWLYHDDRC 314          
BLAST of mRNA_A-nodosum_M_contig123.71.1 vs. uniprot
Match: A0A7S1TYR4_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TYR4_9STRA)

HSP 1 Score: 216 bits (550), Expect = 3.180e-66
Identity = 103/146 (70.55%), Postives = 121/146 (82.88%), Query Frame = 1
Query:   37 GNANYRIQKELKEFLVNPPDGCKVSVGKNIRVWIITISGAEGTIYAGEKFRLRVAFPEDYPTKPPAVYFLQSPPPPKHQHIYTNGDICLSLLSSRDWKPNLTVMSLALSILSMLSSAKEKRIPEDNAAHADSRPGQAQQ-WIYHDD 471
            GN  YRIQKEL+EF+ NPP  CKVSVG NIRVW +T++GAE T+Y GE+++LRV FP  YPTKPP+VYFL+  PPPKH H+YTNGDICLSLL  +DW+PNLT  SLALSILSMLSSA+EKR+P DNA HADS PG+ Q  W+YHDD
Sbjct:   98 GNPLYRIQKELREFVDNPPPNCKVSVGDNIRVWTVTLTGAEDTLYEGEEYKLRVTFPTGYPTKPPSVYFLK--PPPKHPHVYTNGDICLSLLG-KDWRPNLTASSLALSILSMLSSAREKRLPNDNAQHADSPPGKPQDGWMYHDD 240          
BLAST of mRNA_A-nodosum_M_contig123.71.1 vs. uniprot
Match: A0A7S4RNY0_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4RNY0_9STRA)

HSP 1 Score: 208 bits (529), Expect = 1.070e-61
Identity = 98/156 (62.82%), Postives = 122/156 (78.21%), Query Frame = 1
Query:   13 HLQTTYRPGNANYRIQKELKEFLVNPPDGCKVSVGKNIRVWIITISGAEGTIYAGEKFRLRVAFPEDYPTKPPAVYFLQSPPPPKHQHIYTNGDICLSLLSSRDWKPNLTVMSLALSILSMLSSAKEKRIPEDNAAHADSRPGQAQQ-WIYHDDLC 477
            HL    +  + NYRIQKEL+ FL +PP    V+VGKNIRVWI+TI+GA  TIY GEK+RLR++FP +YPT PP+VYFL  PP PKH+H+YTNGDICLSLL  +DW+P +T  SLA+SILS+LSSA+EK +P DNAAH+ ++PG  Q  WIYHDD C
Sbjct:  196 HLSAKLKSNSPNYRIQKELRAFLTSPPPNLSVAVGKNIRVWIVTITGASNTIYEGEKYRLRMSFPSNYPTSPPSVYFL--PPTPKHEHVYTNGDICLSLLG-KDWRPTMTGQSLAVSILSLLSSAREKSLPMDNAAHSQNKPGGNQDNWIYHDDNC 348          
BLAST of mRNA_A-nodosum_M_contig123.71.1 vs. uniprot
Match: A0A7S2L3M3_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2L3M3_9STRA)

HSP 1 Score: 207 bits (528), Expect = 1.640e-61
Identity = 97/160 (60.62%), Postives = 124/160 (77.50%), Query Frame = 1
Query:    1 ATDSHLQTTYRPGNANYRIQKELKEFLVNPPDGCKVSVGKNIRVWIITISGAEGTIYAGEKFRLRVAFPEDYPTKPPAVYFLQSPPPPKHQHIYTNGDICLSLLSSRDWKPNLTVMSLALSILSMLSSAKEKRIPEDNAAHADSRPGQAQQ-WIYHDDLC 477
            A D HL+++    N NYRIQ+ELK F+ +PP+   V VGKNIRVWIIT++GA G+IY GEK+RL V FP++YP  PP+VYFL   P P+H+H+YTNGDICLSLL  +DW+P +T  S+ALSILS+LSSA  K +P+DNAAHA ++PG AQ  W+YHDD C
Sbjct:  195 AVDFHLKSSLSQNNPNYRIQQELKAFIKSPPENLSVKVGKNIRVWIITLTGATGSIYEGEKYRLHVKFPKNYPAAPPSVYFLN--PTPRHEHVYTNGDICLSLLG-KDWRPTMTAQSIALSILSILSSASHKALPQDNAAHAGAQPGLAQDDWVYHDDNC 351          
BLAST of mRNA_A-nodosum_M_contig123.71.1 vs. uniprot
Match: B7FUS1_PHATC (Predicted protein n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7FUS1_PHATC)

HSP 1 Score: 200 bits (509), Expect = 4.720e-61
Identity = 93/160 (58.13%), Postives = 122/160 (76.25%), Query Frame = 1
Query:    1 ATDSHLQTTYRPGNANYRIQKELKEFLVNPPDGCKVSVGKNIRVWIITISGAEGTIYAGEKFRLRVAFPEDYPTKPPAVYFLQSPPPPKHQHIYTNGDICLSLLSSRDWKPNLTVMSLALSILSMLSSAKEKRIPEDNAAHADSRPGQAQQ-WIYHDDLC 477
            A D+HLQ   +  + NYRIQ+ELK FL +PP    V VGKN+RVWI++I GA+GT+Y GE F+LR++FP  YPT PP+VYFL  P  P H+H+YTNGDICLSLL  +DW+P +T  S+A+SILS+LSSA+ K +P DNA HA ++PG+ Q+ W+YHDD C
Sbjct:   12 AADAHLQAKLKSTSPNYRIQRELKAFLSDPPSNLSVKVGKNLRVWIVSIEGAKGTVYEGEIFKLRISFPPQYPTVPPSVYFLP-PSIPVHEHVYTNGDICLSLLG-KDWRPTMTAQSIAVSILSILSSAQSKSLPMDNARHAQNKPGEYQKDWVYHDDNC 169          
BLAST of mRNA_A-nodosum_M_contig123.71.1 vs. uniprot
Match: A0A7S2R2N4_9STRA (Hypothetical protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2R2N4_9STRA)

HSP 1 Score: 201 bits (511), Expect = 8.530e-61
Identity = 95/156 (60.90%), Postives = 119/156 (76.28%), Query Frame = 1
Query:   13 HLQTTYRPGNANYRIQKELKEFLVNPPDGCKVSVGKNIRVWIITISGAEGTIYAGEKFRLRVAFPEDYPTKPPAVYFLQSPPPPKHQHIYTNGDICLSLLSSRDWKPNLTVMSLALSILSMLSSAKEKRIPEDNAAHADSRPGQAQQ-WIYHDDLC 477
            H+    +  N NYRIQ+ELKEFL +PP   KV+VGKNIRVWIIT+ GA+ TIY G+KFRLRV FP DYPT PP+VYFLQ  P P+H+H+YTNGDICLSLL  +DW+P +T  S+A+SILS+LS A+ K +P DNA +  ++PG  Q  W+YHDD C
Sbjct:   57 HIAKELKSNNPNYRIQRELKEFLKSPPPNLKVNVGKNIRVWIITLIGAKNTIYDGDKFRLRVQFPADYPTSPPSVYFLQ--PTPRHEHVYTNGDICLSLLG-KDWRPTMTAQSIAMSILSILSGAQRKSLPMDNARNCLNKPGAKQDDWVYHDDNC 209          
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig123.71.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FQY7_ECTSI2.230e-10292.41Ubiquitin-conjugating enzyme n=1 Tax=Ectocarpus si... [more]
A0A835ZFF1_9STRA5.350e-7371.43Ubiquitin-conjugating enzyme/RWD-like protein n=1 ... [more]
A0A0G4GQN8_VITBC1.350e-6963.75UBC core domain-containing protein n=1 Tax=Vitrell... [more]
A0A0G4GVI6_9ALVE3.110e-6763.13UBC core domain-containing protein n=1 Tax=Chromer... [more]
W7U274_9STRA1.270e-6663.46Ubiquitin-conjugating enzyme n=2 Tax=Monodopsidace... [more]
A0A7S1TYR4_9STRA3.180e-6670.55Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A7S4RNY0_9STRA1.070e-6162.82Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A7S2L3M3_9STRA1.640e-6160.63Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]
B7FUS1_PHATC4.720e-6158.13Predicted protein n=1 Tax=Phaeodactylum tricornutu... [more]
A0A7S2R2N4_9STRA8.530e-6160.90Hypothetical protein n=1 Tax=Eucampia antarctica T... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig123contigA-nodosum_M_contig123:585254..587741 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FQY7
Preferred nameUBC17
PFAMsUQ_con
Model size896
Max annot lvl2759|Eukaryota
KEGG rclassRC00064,RC00141
KEGG koko:K01446,ko:K10688,ko:K13963,ko:K19589,ko:K20182
KEGG ReactionR04112
KEGG Pathwayko04120,ko04138,ko05146,map04120,map04138,map05146
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000209,GO:0001101,GO:0003674,GO:0003824,GO:0004842,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0006464,GO:0006508,GO:0006511,GO:0006513,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009719,GO:0009725,GO:0009739,GO:0009987,GO:0010033,GO:0010498,GO:0016567,GO:0016740,GO:0019538,GO:0019787,GO:0019899,GO:0019941,GO:0030163,GO:0031625,GO:0032446,GO:0033993,GO:0036211,GO:0042221,GO:0043161,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043632,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044389,GO:0044424,GO:0044464,GO:0050896,GO:0051603,GO:0061630,GO:0061659,GO:0070647,GO:0071704,GO:0140096,GO:1901564,GO:1901565,GO:1901575,GO:1901700
Exons6
Evalue2.24e-19
EggNOG OGsCOG5078@1|root,KOG0427@2759|Eukaryota
EC2.1.1.297,2.3.2.25
Descriptionprotein polyubiquitination
Cds size135
COG categoryO
BRITEko00000,ko00001,ko01000,ko03012,ko04121,ko04131
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig123.71.1prot_A-nodosum_M_contig123.71.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig123 585670..586472 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866660.294005-UTR-A-nodosum_M_contig123:585253..5856691680866660.294005-UTR-A-nodosum_M_contig123:585253..585669Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig123 585254..585669 -
1680866660.4668977-UTR-A-nodosum_M_contig123:586472..5865441680866660.4668977-UTR-A-nodosum_M_contig123:586472..586544Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig123 586473..586544 -
1680866660.4800212-UTR-A-nodosum_M_contig123:586698..5868431680866660.4800212-UTR-A-nodosum_M_contig123:586698..586843Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig123 586699..586843 -
1680866660.488003-UTR-A-nodosum_M_contig123:587107..5871721680866660.488003-UTR-A-nodosum_M_contig123:587107..587172Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig123 587108..587172 -
1680866660.4961166-UTR-A-nodosum_M_contig123:587678..5877411680866660.4961166-UTR-A-nodosum_M_contig123:587678..587741Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig123 587679..587741 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866660.381223-CDS-A-nodosum_M_contig123:585669..5857281680866660.381223-CDS-A-nodosum_M_contig123:585669..585728Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig123 585670..585728 -
1680866660.3915246-CDS-A-nodosum_M_contig123:585959..5860331680866660.3915246-CDS-A-nodosum_M_contig123:585959..586033Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig123 585960..586033 -
1680866660.4568248-CDS-A-nodosum_M_contig123:586470..5864721680866660.4568248-CDS-A-nodosum_M_contig123:586470..586472Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig123 586471..586472 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig123.71.1

>prot_A-nodosum_M_contig123.71.1 ID=prot_A-nodosum_M_contig123.71.1|Name=mRNA_A-nodosum_M_contig123.71.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=45bp
MSLALSILSMLSSAKEKRIPEDNAAHADSRPGQAQQWIYHDDLC*
back to top

mRNA from alignment at A-nodosum_M_contig123:585254..587741-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig123.71.1 ID=mRNA_A-nodosum_M_contig123.71.1|Name=mRNA_A-nodosum_M_contig123.71.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=2488bp|location=Sequence derived from alignment at A-nodosum_M_contig123:585254..587741- (Ascophyllum nodosum dioecious)
GCAACTGATTCTCACCTTCAGACGACGTATCGACCTGGCAACGCCAACTA TCGTATACAGAAGGTTGGTTGGACTCCCCCGCTGAACGCCTCGACCAGCG ATACGTTTACAGTATAATATGTTCGGACGTCACCCTGCGGTGTGTGGCGT GCCTCTTGGAGCGTAGCTGTTATAGGGTCGACTCCGAGGACGGTGTCTCC CGGCGCGTAAACGTGTGTGTCTTGACAAGTCTTACTACCTCCGTCCATAT TTCGGGCTTTGCCCCGGCTTAGAGCTTTCTTGCGAAAAATCTCGCGAAGC CCTTTGGCGCAAAGAGCGATCGTTGGAAGCCTTGTGGTCGTTCTCGAGTG GTTTTCCTCTCGACGCCCTACTATATAGACACTGTTGATTTTGATTTTCA GCTCTTGTAGAAGAGTGGAAAATTTCAAATTTACCTGTAATGCTATCTTG AACTCGTTTTTCGAGAAGCCTGACGCCGACAAAATACTAGTCAAACACCC CTACTACGCGTTGTAAAGTCGATATTTTAATAGCATGTTTTAAGCATTTC ATTGTACAATCACGGTCAGGAGCTGAAGGAGTTTTTGGTCAATCCACCGG ATGGGTGCAAGGTCAGCGTGGGCAAGAATATCAGGTTAGCGTGGGTGTGT CCCACTTTTTAAGGCGGCTTTTGTTACCCGCCCTTGCAATGAAATGTAAT TTGTACAGTAGAAGCATTCGACTCGCGGCTATTGATACTGCTGTGGTAGC ATGAGAAGAAGATGGAGCACTGGGTGGCCGGATGCTTGAGTCGTTCTGCG CCAGCTGTCCCTCGCAGGAACGCAGCGCGTGTCTTCACGTAGTCACGAGG TACCATAATATCACGCTCCCAATTGTTTCGCTCTTGAGTGTGGACTAGGG TGTGGATTATTACCATCAGTGGGGCCGAGGGCACCATCTACGCAGGGGAG AAATTTCGTCTTCGAGTGGCCTTCCCCGAAGACTACCCGACGAAACCACC TGCGGTGTACTTTCTGCAGTCGCCTCCGCCGCCTAAGCACCAGGTCAGCG CCCTTGACTGCGCATGAGGCCAGATGGGCCTTTGCGACTGAATGAGGTTG TTTCAAGTCCGTCGCACCAGTCGCTTGCCATAAGTCTGACGTGTCCTGCC TGTTTGCTGTTCCGTGTTCCGTACGCCCACGAACCTTTGGGGTGCAGCAC ATCTACACGAACGGTGATATTTGCTTGAGCTTGTTGAGCTCCAGGGACTG GAAGCCGAATCTCACCGTCATGTGAGTTGCTGGATATAACTTCGTTGGTG CTGTTGGGGCTTCAGCAGGCACAGCTCTTGCCGTTGTTGGAAGAGTCGGC CCTAAAAGAGAGAACTGTAGTATACAAAACCAAGGTGTTTTCACAATTTT CTAATCTCTAAATCTGCTGGTACAGTAAATGAACGCAAGTTGTGTTCCTT GGATAAGAGATGTGCCCTATTTTCCCGCTCGAGTGCGTTGTGGGGTTAAA TACATATATTCCGTCCGATGATACAAGTGCTTGTTGCATCCTCATCGCCA GCATCCAGGGGAACGCATACAACAGGGTTTCCTTGTAAAGCGCGTGCTGA ACACGGAGACCGTCAACAATTTTAGGTCTAGAGAGGCTTTCAGCGATCCT CTGGCGGCGACCTGACGTGCCCCTAAATCTGCTGCTGTCACCACATGGCA TCGCACAGGTCCCTGGCTTTAAGCATCCTCAGCATGCTCTCTAGTGCAAA GGAGAAGCGCATCCCGGAGGACAACGCAGCGCGTAAGTTCTTCACTCCAT GTAGCGATTGAACCAATCGTTTTTCTGCTGCACGTATGTGCCTCGGAATA GAACAGCAATAATTTCTCCCGCCGTTTTAAATTACGTACACAAAAACATT ATTTCCGCTCTTCTCTCAAGTACATTCCAAGTACTCATGTAATTTACGAC GGTGACGCATCCTGACTCTTAACTCCCCTCCCTGTCTTGCTGTCGATTGA TGCTGGTAAACAGACGCCGACTCGAGGCCTGGCCAGGCTCAACAATGGAT CTATCACGATGATCTGTGCTAGTTCATGTGGAGATGAAATTTGCTGCCGA GCGTACTGCCTTGCCTTGAGTGAGCTGTGCTGCTGGAGATGGGTACACCA CCTTACAGAAGATGGCAAGCACAGCCATCTGAAATGGTCAAGCATGCCCA AGCCGCGATGAACTCGTACGGTGGCTCGATGCGGTGGCCGCTTACTGTCG ATGTAGATATCAGAGTGATGTATCGCAACGGAAGCACTGGCCTTGATGCC AAGGGTGACTCATGGAAGTGGTGTATAGGTAGTATGCATACCCATAACTT ACTATCTTAGCATAAAGCTGTTCGCGAACGATGTGTTTGTTCTGATTCTA AACCGGTGGTACACTGTCCAGGCGAAAGAAAACCTTCCACCATTATGGTT AAGTGCGTTAAGTGCGACTATCTTCTACGACAGTGGAG
back to top

Coding sequence (CDS) from alignment at A-nodosum_M_contig123:585254..587741-

>mRNA_A-nodosum_M_contig123.71.1 ID=mRNA_A-nodosum_M_contig123.71.1|Name=mRNA_A-nodosum_M_contig123.71.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=135bp|location=Sequence derived from alignment at A-nodosum_M_contig123:585254..587741- (Ascophyllum nodosum dioecious)
ATGTCCCTGGCTTTAAGCATCCTCAGCATGCTCTCTAGTGCAAAGGAGAA
GCGCATCCCGGAGGACAACGCAGCGCACGCCGACTCGAGGCCTGGCCAGG
CTCAACAATGGATCTATCACGATGATCTGTGCTAG
back to top