mRNA_A-nodosum_M_contig123.4.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig123.4.1
Unique NamemRNA_A-nodosum_M_contig123.4.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
BLAST of mRNA_A-nodosum_M_contig123.4.1 vs. uniprot
Match: A0A6H5JW02_9PHAE (Roc domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JW02_9PHAE)

HSP 1 Score: 93.2 bits (230), Expect = 5.030e-18
Identity = 71/222 (31.98%), Postives = 103/222 (46.40%), Query Frame = 1
Query:    4 AGQVDYYGLHQLFLTERALYVLVWNASKFLGK-----HEALSDELKDWLATLHLRAPQSTVLLCGTHKDKCVPLNIFEKSQALHKRSPSIGKTLQDVEESVNQKHKEWKQDRREGHTNRDEELELVSGIQLVSSSPTLRYRDSGLLVLQAKLITYGTGIRWWIPPSWRLALVVLDAVRDEIAPVEAARLFVEDLPQPQ----QTGKRTWIARKDLSRHWETV 642
            AGQVDYYG+HQ FLT RALY+LVW+  +  GK      E +  ++  WL  LHLRAP STV+L     D  +    F  + A+             VEE V    KEW++ R    T  D ++ ++    LVS    +  ++          I   +     +PP+W LAL  LDA+RD   P +A R  +    +P+    +   R++     L   W+ V
Sbjct:  281 AGQVDYYGMHQNFLTRRALYLLVWDVLRCHGKTDDDLDEVIFQDIMRWLYVLHLRAPGSTVILVANKCDGSI--EDFTGTAAV-------------VEERVAVLRKEWRKARGFSSTRMDMDMTVLERSSLVSCLDGVGLQE------MIDRIAAQSAASMRVPPAWGLALTFLDALRDSRDPQQACRDCLSLGSRPKVGADREPGRSFFTENSLVEQWKGV 481          
BLAST of mRNA_A-nodosum_M_contig123.4.1 vs. uniprot
Match: D7FVX5_ECTSI (LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVX5_ECTSI)

HSP 1 Score: 92.0 bits (227), Expect = 1.300e-17
Identity = 70/192 (36.46%), Postives = 96/192 (50.00%), Query Frame = 1
Query:    4 AGQVDYYGLHQLFLTERALYVLVWNASKFLGKH-----EALSDELKDWLATLHLRAPQSTVLLCGTHKDKCVPLNIFEKSQALHKRSPSIGKTLQDVEESVNQKHKEWKQDRREGHTNRDEELELVSGIQLVSSSPTLRYRDSGLLVLQAKLITYG-TGIRWWIPPSWRLALVVLDAVRDEIAPVEAARLFV 561
            AGQVDYYG+HQ FLT RALY+LVW+ S+  GK      + +S+++  WL  LHLR P S VLL     D  +                 +G T   VE S  ++ +EW+ +R+     +   L ++    LVS          GL  + A++   G T I   +PPSW LAL  LDA+RD   P  A R F+
Sbjct:  443 AGQVDYYGMHQTFLTRRALYLLVWDVSRCHGKESNDLDKVVSEDIMKWLYALHLRVPGSAVLLVANKCDGSL--------------QEFVG-TAGAVESSARRQLQEWQGNRKSPGVTK---LTILQQPSLVSCDD-----GGGLSEVIARVDAQGATSIV--VPPSWGLALAFLDALRDSRDPEPATRRFL 609          
BLAST of mRNA_A-nodosum_M_contig123.4.1 vs. uniprot
Match: A0A6H5K8T1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8T1_9PHAE)

HSP 1 Score: 90.5 bits (223), Expect = 4.070e-17
Identity = 77/223 (34.53%), Postives = 111/223 (49.78%), Query Frame = 1
Query:    4 AGQVDYYGLHQLFLTERALYVLVWNASKFLGKHE---ALSDELKDWLATLHLRAPQSTVLLCGTHKDKCVPLNIFEKSQALHKRSPSIGKTLQDVEESVNQKHK-EWKQDRREGHTNRDEELELVSGIQLVSSSPTLRYRDSGLLVLQAKLITYGTGIRWWIPPSWRLALVVLDAVRDEIAPVEAARLFVEDLPQP------QQTGKRTWIARKDLSRHWETV 642
            AGQVDY G+HQ FLT RALY+LV + +K+ G  +   A+ D++  WL  L+LRAP STV+L     D  +     E ++ + +R          V E V   H+    + R +GH     +L L+ G+  VS         SGL  L A LI+        +PP+W LAL V+ A+R    P+ AAR  +  LP P             +I++ +LSR W +V
Sbjct:  128 AGQVDYAGMHQTFLTRRALYLLVVDITKYHGVDDLDKAIHDDIMRWLYYLYLRAPGSTVVLVANKCDGSID-KFAETAERIQRR----------VRELVAVWHEARGLRGRSKGHVT---DLTLLPGMSRVSCQEKGSPEASGLPALIA-LISRQAATAIHVPPAWDLALEVIGALRASCNPIAAARDKL-GLPNPLPADGVADVHAFAFISKDELSRKWRSV 334          
BLAST of mRNA_A-nodosum_M_contig123.4.1 vs. uniprot
Match: A0A8B7DGY2_HYDVU (leucine-rich repeat serine/threonine-protein kinase 2-like n=1 Tax=Hydra vulgaris TaxID=6087 RepID=A0A8B7DGY2_HYDVU)

HSP 1 Score: 68.9 bits (167), Expect = 1.040e-9
Identity = 38/80 (47.50%), Postives = 49/80 (61.25%), Query Frame = 1
Query:    4 AGQVDYYGLHQLFLTERALYVLVWNASKFLGKHEALSDELKDWLATLHLRAPQSTVLLCGTHKDKCVP-----LNIFEKS 228
            AGQ D+Y  H+ FL+ RALY+ V+NASK  G+ E    +L  WL  + + AP S V+L GTH DKC+      LN F KS
Sbjct:  522 AGQEDFYSTHRYFLSSRALYLAVYNASK--GEEEL--KKLTPWLLNIQIVAPYSKVILVGTHADKCIQENLQSLNAFTKS 597          
BLAST of mRNA_A-nodosum_M_contig123.4.1 vs. uniprot
Match: UPI001F5F513F (leucine-rich repeat serine/threonine-protein kinase 2 isoform X1 n=4 Tax=Hydra vulgaris TaxID=6087 RepID=UPI001F5F513F)

HSP 1 Score: 68.9 bits (167), Expect = 1.060e-9
Identity = 38/80 (47.50%), Postives = 49/80 (61.25%), Query Frame = 1
Query:    4 AGQVDYYGLHQLFLTERALYVLVWNASKFLGKHEALSDELKDWLATLHLRAPQSTVLLCGTHKDKCVP-----LNIFEKS 228
            AGQ D+Y  H+ FL+ RALY+ V+NASK  G+ E    +L  WL  + + AP S V+L GTH DKC+      LN F KS
Sbjct: 1009 AGQEDFYSTHRYFLSSRALYLAVYNASK--GEEEL--KKLTPWLLNIQIVAPYSKVILVGTHADKCIQENLQSLNAFTKS 1084          
BLAST of mRNA_A-nodosum_M_contig123.4.1 vs. uniprot
Match: UPI001EE58317 (leucine-rich repeat serine/threonine-protein kinase 2-like n=1 Tax=Haliotis rubra TaxID=36100 RepID=UPI001EE58317)

HSP 1 Score: 66.2 bits (160), Expect = 8.540e-9
Identity = 33/87 (37.93%), Postives = 51/87 (58.62%), Query Frame = 1
Query:    4 AGQVDYYGLHQLFLTERALYVLVWNASKFLGKHEALSDELKDWLATLHLRAPQSTVLLCGTHKDKCVPLNIFEKSQALHKRSPSIGK 264
            AGQ ++Y  HQ FL+ RALY++V++ SK L +     D LK WL+ +H RAP   V++ GTH DK  P +  ++   +  +   + K
Sbjct:  698 AGQEEFYSTHQCFLSNRALYLVVYDVSKGLEE----IDRLKPWLSNIHFRAPGCPVIVVGTHFDKLNPEHAADQIDGMEAKLYELSK 780          
BLAST of mRNA_A-nodosum_M_contig123.4.1 vs. uniprot
Match: UPI0001CBABD9 (leucine-rich repeat serine/threonine-protein kinase 1-like n=1 Tax=Saccoglossus kowalevskii TaxID=10224 RepID=UPI0001CBABD9)

HSP 1 Score: 66.2 bits (160), Expect = 8.640e-9
Identity = 32/65 (49.23%), Postives = 44/65 (67.69%), Query Frame = 1
Query:    1 LAGQVDYYGLHQLFLTERALYVLVWNASKFLGKHEALSDELKDWLATLHLRAPQSTVLLCGTHKD 195
            LAGQ +YY +HQ FLT   LY++VW+ +  LG+     D+L+ WL+ +H RAP S V+L GTH D
Sbjct:  770 LAGQPEYYVIHQCFLTPNTLYMVVWDLT--LGEEGI--DQLEPWLSNIHARAPDSMVILVGTHLD 830          
BLAST of mRNA_A-nodosum_M_contig123.4.1 vs. uniprot
Match: A0A2T7NTI5_POMCA (Non-specific serine/threonine protein kinase n=3 Tax=Pomacea canaliculata TaxID=400727 RepID=A0A2T7NTI5_POMCA)

HSP 1 Score: 65.9 bits (159), Expect = 1.180e-8
Identity = 34/68 (50.00%), Postives = 42/68 (61.76%), Query Frame = 1
Query:    4 AGQVDYYGLHQLFLTERALYVLVWNASKFLGKHEALSDELKDWLATLHLRAPQSTVLLCGTHKDKCVP 207
            AGQ D+Y  HQ FL+ R LY+ V++ S  LG  E   D LK WLA +H RAP   V++ GTH DK  P
Sbjct: 1407 AGQEDFYSTHQCFLSNRTLYLGVYDIS--LGTDEV--DRLKPWLANIHARAPGCPVIIVGTHYDKMAP 1470          
BLAST of mRNA_A-nodosum_M_contig123.4.1 vs. uniprot
Match: A0A1I8AFB0_9BILA (Non-specific serine/threonine protein kinase n=1 Tax=Steinernema glaseri TaxID=37863 RepID=A0A1I8AFB0_9BILA)

HSP 1 Score: 64.7 bits (156), Expect = 2.890e-8
Identity = 30/66 (45.45%), Postives = 42/66 (63.64%), Query Frame = 1
Query:    7 GQVDYYGLHQLFLTERALYVLVWNASKFLGKHEALSDELKDWLATLHLRAPQSTVLLCGTHKDKCV 204
            GQ +YY  HQ FL+ R+LYV+VW AS      +A  +++  WL  +  RAP STV++ GTH D+ V
Sbjct: 1034 GQREYYATHQYFLSRRSLYVVVWKASD----GDAALNDVHQWLVNIQARAPNSTVIIVGTHYDQVV 1095          
BLAST of mRNA_A-nodosum_M_contig123.4.1 vs. uniprot
Match: UPI001EAFAFD8 (leucine-rich repeat serine/threonine-protein kinase 2-like n=2 Tax=Haliotis rufescens TaxID=6454 RepID=UPI001EAFAFD8)

HSP 1 Score: 64.7 bits (156), Expect = 2.900e-8
Identity = 32/68 (47.06%), Postives = 44/68 (64.71%), Query Frame = 1
Query:    4 AGQVDYYGLHQLFLTERALYVLVWNASKFLGKHEALSDELKDWLATLHLRAPQSTVLLCGTHKDKCVP 207
            AGQ ++Y  HQ FL+ RALY++V++ S+  G  E   D LK WL+ +H RAP   V++ GTH DK  P
Sbjct: 1461 AGQEEFYSTHQCFLSNRALYLVVYDVSR--GPEEI--DRLKPWLSNIHFRAPGCPVIVVGTHFDKLDP 1524          
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig123.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JW02_9PHAE5.030e-1831.98Roc domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7FVX5_ECTSI1.300e-1736.46LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus s... [more]
A0A6H5K8T1_9PHAE4.070e-1734.53Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A8B7DGY2_HYDVU1.040e-947.50leucine-rich repeat serine/threonine-protein kinas... [more]
UPI001F5F513F1.060e-947.50leucine-rich repeat serine/threonine-protein kinas... [more]
UPI001EE583178.540e-937.93leucine-rich repeat serine/threonine-protein kinas... [more]
UPI0001CBABD98.640e-949.23leucine-rich repeat serine/threonine-protein kinas... [more]
A0A2T7NTI5_POMCA1.180e-850.00Non-specific serine/threonine protein kinase n=3 T... [more]
A0A1I8AFB0_9BILA2.890e-845.45Non-specific serine/threonine protein kinase n=1 T... [more]
UPI001EAFAFD82.900e-847.06leucine-rich repeat serine/threonine-protein kinas... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig123contigA-nodosum_M_contig123:95842..96888 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D7FVX5
Preferred nameSLITRK2
PFAMsLRR_8
Model size723
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
GOsGO:0000902,GO:0000904,GO:0005575,GO:0005623,GO:0005886,GO:0007275,GO:0007399,GO:0007409,GO:0008150,GO:0009653,GO:0009987,GO:0016020,GO:0016021,GO:0016043,GO:0022008,GO:0030030,GO:0030154,GO:0030182,GO:0031175,GO:0031224,GO:0032501,GO:0032502,GO:0032989,GO:0032990,GO:0044087,GO:0044089,GO:0044425,GO:0044464,GO:0048468,GO:0048518,GO:0048522,GO:0048666,GO:0048667,GO:0048699,GO:0048731,GO:0048812,GO:0048856,GO:0048858,GO:0048869,GO:0050789,GO:0050793,GO:0050794,GO:0050803,GO:0050807,GO:0051094,GO:0051128,GO:0051130,GO:0051239,GO:0051240,GO:0051960,GO:0051962,GO:0051963,GO:0051965,GO:0061564,GO:0065007,GO:0065008,GO:0071840,GO:0071944,GO:0120036,GO:0120039,GO:2000026
Exons2
Evalue2.12e-18
EggNOG OGs2CMPC@1|root,2QR6C@2759|Eukaryota
Descriptionpositive regulation of synapse assembly
Cds size723
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866658.0570245-CDS-A-nodosum_M_contig123:95841..964591680866658.0570245-CDS-A-nodosum_M_contig123:95841..96459Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig123 95842..96459 -
1680866658.1246896-CDS-A-nodosum_M_contig123:96783..968881680866658.1246896-CDS-A-nodosum_M_contig123:96783..96888Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig123 96784..96888 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig123.4.1prot_A-nodosum_M_contig123.4.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig123 95842..96888 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig123.4.1

>prot_A-nodosum_M_contig123.4.1 ID=prot_A-nodosum_M_contig123.4.1|Name=mRNA_A-nodosum_M_contig123.4.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=241bp
LAGQVDYYGLHQLFLTERALYVLVWNASKFLGKHEALSDELKDWLATLHL
RAPQSTVLLCGTHKDKCVPLNIFEKSQALHKRSPSIGKTLQDVEESVNQK
HKEWKQDRREGHTNRDEELELVSGIQLVSSSPTLRYRDSGLLVLQAKLIT
YGTGIRWWIPPSWRLALVVLDAVRDEIAPVEAARLFVEDLPQPQQTGKRT
WIARKDLSRHWETVQECSFLPAYLKAEDREFTLESVLDLR*
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mRNA from alignment at A-nodosum_M_contig123:95842..96888-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig123.4.1 ID=mRNA_A-nodosum_M_contig123.4.1|Name=mRNA_A-nodosum_M_contig123.4.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=1047bp|location=Sequence derived from alignment at A-nodosum_M_contig123:95842..96888- (Ascophyllum nodosum dioecious)
TTGGCTGGACAAGTGGACTATTACGGTCTGCATCAACTTTTCCTGACGGA GCGGGCCCTGTACGTGCTGGTGTGGAACGCATCGAAGTTTTTGGGTAAAC ATGAGGTGACGAAGTCTGCAGCATTATATAGCTACATGGATGATAGATAA ATTTGCGCCCTTGTCTGAATCTATTCCATGTTTTATACGCGTATCACCAA CACTTACTGATGCCGTGTGTGTCGCTTAGGTTATCGTCAGATAAAAAGAA AACTCTTATTTACCTTCCTGTCTCAGCTAAAAGCGTTGTTTGGTACCGTG ATGCAGTTGTAGAATACCTGTCCTCTACGCTATGCCAATACACGGCGTAC TGAGCGTCAACCCTTGAGGTGCAGGATTAACAACGCGATAAGGTACGTGA TAATTTTATGCATTTGTTTTCCTTCTCAGGCGCTTTCGGACGAACTGAAG GACTGGCTGGCGACCCTTCACCTAAGGGCTCCCCAATCTACCGTGCTCCT GTGCGGTACACACAAGGACAAGTGTGTACCACTCAATATTTTCGAGAAAT CACAGGCGTTGCACAAACGATCTCCATCGATCGGGAAAACTCTGCAAGAT GTTGAAGAGTCTGTAAACCAAAAGCACAAGGAATGGAAACAGGATCGTAG GGAAGGCCACACTAACAGGGACGAAGAACTGGAGCTGGTGAGTGGGATTC AGCTGGTGAGCTCATCTCCCACGCTACGTTACCGTGATAGCGGTTTGCTG GTCCTGCAAGCGAAACTAATAACATATGGGACGGGCATCCGATGGTGGAT CCCGCCTTCATGGCGTCTCGCTCTGGTAGTATTGGACGCCGTCCGGGACG AGATCGCTCCAGTGGAAGCTGCCCGACTCTTTGTGGAGGACCTGCCCCAA CCTCAACAAACGGGGAAACGTACTTGGATAGCCAGGAAAGATCTTTCGCG TCACTGGGAGACCGTCCAGGAATGCAGTTTCCTTCCGGCGTATCTAAAGG CTGAAGACCGCGAGTTCACGCTAGAGAGCGTTCTGGACTTGAGGTAA
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Coding sequence (CDS) from alignment at A-nodosum_M_contig123:95842..96888-

>mRNA_A-nodosum_M_contig123.4.1 ID=mRNA_A-nodosum_M_contig123.4.1|Name=mRNA_A-nodosum_M_contig123.4.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=723bp|location=Sequence derived from alignment at A-nodosum_M_contig123:95842..96888- (Ascophyllum nodosum dioecious)
TTGGCTGGACAAGTGGACTATTACGGTCTGCATCAACTTTTCCTGACGGA
GCGGGCCCTGTACGTGCTGGTGTGGAACGCATCGAAGTTTTTGGGTAAAC
ATGAGGCGCTTTCGGACGAACTGAAGGACTGGCTGGCGACCCTTCACCTA
AGGGCTCCCCAATCTACCGTGCTCCTGTGCGGTACACACAAGGACAAGTG
TGTACCACTCAATATTTTCGAGAAATCACAGGCGTTGCACAAACGATCTC
CATCGATCGGGAAAACTCTGCAAGATGTTGAAGAGTCTGTAAACCAAAAG
CACAAGGAATGGAAACAGGATCGTAGGGAAGGCCACACTAACAGGGACGA
AGAACTGGAGCTGGTGAGTGGGATTCAGCTGGTGAGCTCATCTCCCACGC
TACGTTACCGTGATAGCGGTTTGCTGGTCCTGCAAGCGAAACTAATAACA
TATGGGACGGGCATCCGATGGTGGATCCCGCCTTCATGGCGTCTCGCTCT
GGTAGTATTGGACGCCGTCCGGGACGAGATCGCTCCAGTGGAAGCTGCCC
GACTCTTTGTGGAGGACCTGCCCCAACCTCAACAAACGGGGAAACGTACT
TGGATAGCCAGGAAAGATCTTTCGCGTCACTGGGAGACCGTCCAGGAATG
CAGTTTCCTTCCGGCGTATCTAAAGGCTGAAGACCGCGAGTTCACGCTAG
AGAGCGTTCTGGACTTGAGGTAA
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