mRNA_A-nodosum_M_contig1228.4.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig1228.4.1
Unique NamemRNA_A-nodosum_M_contig1228.4.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
BLAST of mRNA_A-nodosum_M_contig1228.4.1 vs. uniprot
Match: UPI001AA1A1FE (hypothetical protein n=1 Tax=Vibrio parahaemolyticus TaxID=670 RepID=UPI001AA1A1FE)

HSP 1 Score: 98.6 bits (244), Expect = 3.540e-23
Identity = 55/130 (42.31%), Postives = 69/130 (53.08%), Query Frame = 1
Query:   37 FSYKDALHRTQCESIETTVRTRRLLWAGAILRMGDHRLPKRVMSGELENAGKRGPGGKEKEWTDCVADDLRLF----GVTGD-----------WKTAALDPGAWYNTVQEGGCRFMAAWVREEENASNQR 381
             SY  AL  T+CESIETT+R RRL +AGA++R  + RLP R+M G +   G   PGG+ K W   +A+DLR+F    G T D           W TAA   G WY  + E   +FM  W   E   S QR
Sbjct:   52 LSYAKALRITRCESIETTIRKRRLFFAGAVVRQHEGRLPSRLMFGTIAGGGSPKPGGQPKTWPRAIAEDLRVFKATEGSTEDSPLVFGVGTALWPTAAKQTGKWYRGILEAAEQFMGRWHEAEAKLSRQR 181          
BLAST of mRNA_A-nodosum_M_contig1228.4.1 vs. uniprot
Match: A0A6H5JTZ8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTZ8_9PHAE)

HSP 1 Score: 100 bits (250), Expect = 6.810e-23
Identity = 61/145 (42.07%), Postives = 79/145 (54.48%), Query Frame = 1
Query:   31 REFSYKDALHRTQCESIETTVRTRRLLWAGAILRMGDHRLPKRVMSGELENAGKRGPGGKEKEWTDCVADDLRLFGV-------------------TGD---WKTAA-LDPGA-WYNTVQEGGCRFMAAWVREEENASNQRQKKR 393
            R+FSY   L R +C+S+E T+R RRLL+AGA+ R  D RLPKR++ GEL    KR   G+E+ W  CV DDL+ FG                    TG    W  AA ++ G  W+  V  G  RFM +W  +EE AS QR+ KR
Sbjct:  156 RQFSYAQTLKRVECQSVEATIRQRRLLFAGAMARQPDGRLPKRLVLGELAGGEKRRSAGQEQNWPKCVLDDLKAFGADHGSTKTDPCCLGIPVPKDTGPKLKWTEAAKVEEGVPWHAAVLMGADRFMTSWHEKEEEASRQRELKR 300          
BLAST of mRNA_A-nodosum_M_contig1228.4.1 vs. uniprot
Match: A0A6H5K1X4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1X4_9PHAE)

HSP 1 Score: 102 bits (255), Expect = 7.590e-23
Identity = 62/145 (42.76%), Postives = 77/145 (53.10%), Query Frame = 1
Query:   31 REFSYKDALHRTQCESIETTVRTRRLLWAGAILRMGDHRLPKRVMSGELENAGKRGPGGKEKEWTDCVADDLRLFG----------------VTGD------WKTAALDPGA--WYNTVQEGGCRFMAAWVREEENASNQRQKKR 393
            R+ SY   L R +C+S+E T+R RRLL+AGA+ R  D RLPKR+M GEL    KR  GG+E+ W  CV DDL+ FG                V  D      W  AA   G   W+  V +G  RFM +W  +EE AS QR  KR
Sbjct:  199 RQLSYAQTLKRVECQSVEATIRQRRLLFAGALARQPDGRLPKRLMLGELAGGEKRRRGGQEQNWPKCVLDDLKAFGADHGSTNTDPCCLGIPVPNDTAPKLKWTEAAKVEGEVPWHAAVLQGAERFMTSWHEKEEEASRQRALKR 343          
BLAST of mRNA_A-nodosum_M_contig1228.4.1 vs. uniprot
Match: A0A6H5KS82_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KS82_9PHAE)

HSP 1 Score: 101 bits (252), Expect = 2.410e-22
Identity = 62/145 (42.76%), Postives = 76/145 (52.41%), Query Frame = 1
Query:   31 REFSYKDALHRTQCESIETTVRTRRLLWAGAILRMGDHRLPKRVMSGELENAGKRGPGGKEKEWTDCVADDLRLFGV----------------TGD------WKTAALDPGA--WYNTVQEGGCRFMAAWVREEENASNQRQKKR 393
            R+ SY   L R +C+S+E T+R RRLL+AGA+ R  D RLPKR+M GEL    KR  GG+E+ W  CV DDL  FG                 T D      W  AA   G   W+  V +G  RFM +W  +EE AS QR  KR
Sbjct:  527 RQLSYAQTLKRFECQSVEATIRQRRLLFAGALARQPDGRLPKRLMFGELAGGEKRRRGGQEQNWPKCVLDDLNAFGADHGSTKTDPCCLGIPETKDTAPKLQWTEAAKVEGGVPWHAAVLQGAERFMTSWHEKEEEASRQRALKR 671          
BLAST of mRNA_A-nodosum_M_contig1228.4.1 vs. uniprot
Match: UPI001AA1AADC (hypothetical protein n=1 Tax=Vibrio parahaemolyticus TaxID=670 RepID=UPI001AA1AADC)

HSP 1 Score: 96.7 bits (239), Expect = 2.760e-22
Identity = 56/130 (43.08%), Postives = 65/130 (50.00%), Query Frame = 1
Query:   37 FSYKDALHRTQCESIETTVRTRRLLWAGAILRMGDHRLPKRVMSGELENAGKRGPGGKEKEWTDCVADDLR--------------LFGV-TGDWKTAALDPGAWYNTVQEGGCRFMAAWVREEENASNQR 381
             SY  AL  T+CESIETT+R RRL +AG + R    RLP RVM G +       PGG+ K W  CV +DLR              +FGV T  W TAA   G WY  + E   RFM  W   E   S QR
Sbjct:   14 LSYAKALKMTRCESIETTIRKRRLFFAGGVARQSKDRLPSRVMFGTIAGGENPRPGGQVKTWHRCVVEDLREFRATEGSTELAPLVFGVETALWPTAAKKAGKWYRGILEAAERFMVRWHEAEAELSRQR 143          
BLAST of mRNA_A-nodosum_M_contig1228.4.1 vs. uniprot
Match: A0A6H5KQ91_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQ91_9PHAE)

HSP 1 Score: 100 bits (250), Expect = 4.490e-22
Identity = 61/138 (44.20%), Postives = 76/138 (55.07%), Query Frame = 1
Query:   31 REFSYKDALHRTQCESIETTVRTRRLLWAGAILRMGDHRLPKRVMSGELENAGKRGPGGKEKEWTDCVADDLRLF----GVTGD-----------WKTAALDPGA--WYNTVQEGGCRFMAAWVREEENASNQRQKKR 393
            R+ SY  AL R  C+S+E TVR RRLL+AGA+ R  D RLPKR+M GEL      G G  E+ W  C+ DD+++F    G T D           W  AA   G   W+  V +G  RFMA+W + EE AS QR  KR
Sbjct:  568 RQLSYAQALKRVGCQSVEATVRQRRLLFAGAVARQPDGRLPKRLMFGELVGGEDPGQGNPEQNWLTCLKDDMKMFEARYGSTTDKPSVFGVPKLVWSEAAKVEGGVPWHAGVLQGADRFMASWHKGEEKASRQRAIKR 705          
BLAST of mRNA_A-nodosum_M_contig1228.4.1 vs. uniprot
Match: A0A6H5KF72_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF72_9PHAE)

HSP 1 Score: 96.3 bits (238), Expect = 4.670e-22
Identity = 61/138 (44.20%), Postives = 75/138 (54.35%), Query Frame = 1
Query:   31 REFSYKDALHRTQCESIETTVRTRRLLWAGAILRMGDHRLPKRVMSGELENAGKRGPGGKEKEWTDCVADDLRLF----GVTGD-----------WKTAALDPGA--WYNTVQEGGCRFMAAWVREEENASNQRQKKR 393
            R+ SY  AL R  C+S+E TVR R LL+AGA+ R  D RLPKR+M GEL      G G  E+ W  C+ DDL++F    G T D           W  AA   G   W+  V +G  RFMA+W + EE AS QR  KR
Sbjct:   35 RQLSYAQALKRVGCQSVEATVRQRCLLFAGAMARQPDGRLPKRLMFGELVGGENPGRGSPEQNWLICLKDDLKMFEARHGSTPDKRSFFGIPKPDWDEAAKVEGGVPWHAGVLQGAERFMASWHKGEEKASRQRAIKR 172          
BLAST of mRNA_A-nodosum_M_contig1228.4.1 vs. uniprot
Match: A0A6H5KA81_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KA81_9PHAE)

HSP 1 Score: 100 bits (248), Expect = 8.040e-22
Identity = 62/138 (44.93%), Postives = 76/138 (55.07%), Query Frame = 1
Query:   31 REFSYKDALHRTQCESIETTVRTRRLLWAGAILRMGDHRLPKRVMSGELENAGKRGPGGKEKEWTDCVADDLRLF----GVTGD-----------WKTAALDPGA--WYNTVQEGGCRFMAAWVREEENASNQRQKKR 393
            R+ SY  AL R  C+S+E TVR RRLL+AGA+ R  D RLPKR+M GEL      G G  E+ W  C+ DDL++F    G T D           W  AA   G   W+  V +G  RFMA+W + EE AS QR  KR
Sbjct:  456 RQLSYAQALKRVGCQSVEATVRQRRLLFAGAVARQPDGRLPKRLMFGELVGGENPGRGSPEQNWLICLKDDLKMFEARHGSTPDKRSFFGIPKPDWDEAAKVEGGVPWHAGVLQGAERFMASWHKGEEKASRQRAIKR 593          
BLAST of mRNA_A-nodosum_M_contig1228.4.1 vs. uniprot
Match: A0A6H5JCQ1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCQ1_9PHAE)

HSP 1 Score: 96.7 bits (239), Expect = 1.240e-21
Identity = 54/125 (43.20%), Postives = 73/125 (58.40%), Query Frame = 1
Query:   31 REFSYKDALHRTQCE-SIETTVRTRRLLWAGAILRMGDHRLPKRVMSGELENAGKRGPGGKEKEWTDCVADDLRLFGVT-----GDWKTAALDPGAWYNTVQEGGCRFMAAWVREEENASNQRQK 387
            R  SY  AL +  CE +IE TVR RRL +AG ++RM D+RLPKR++ G +   G    GG+E +W  C+ +DL  F +      G WK +A DP  WYN V++G    M  W R E  AS +RQ+
Sbjct:  125 RPLSYAQALIQAGCEETIEATVRKRRLCFAGFVMRMEDNRLPKRMLLGAM-GGGVGSRGGQESDWVSCLGEDLVAFNMGDEKEGGKWKESAKDPEVWYNKVEDGVACLMREWHRHEAEASVKRQR 248          
BLAST of mRNA_A-nodosum_M_contig1228.4.1 vs. uniprot
Match: A0A6H5JWS4_9PHAE (Reverse transcriptase domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWS4_9PHAE)

HSP 1 Score: 97.8 bits (242), Expect = 1.350e-21
Identity = 59/138 (42.75%), Postives = 76/138 (55.07%), Query Frame = 1
Query:   31 REFSYKDALHRTQCESIETTVRTRRLLWAGAILRMGDHRLPKRVMSGELENAGKRGPGGKEKEWTDCVADDLRLF----GVTGD-----------WKTAALDPGA--WYNTVQEGGCRFMAAWVREEENASNQRQKKR 393
            R+ SY  AL R  C+S+E TVR RRLL+AGA+ R  D RLPKR+M GEL      G G  E+ W  C+ DD+++F    G T D           W  AA   G   W+  V +G  RFMA+W + +E A+ QR  KR
Sbjct:  173 RQLSYAQALKRVGCQSVEATVRQRRLLFAGAVARQPDGRLPKRLMFGELVGGEDPGQGNPEQNWLTCLKDDMKMFEARYGSTTDKPSVFGVPKLVWSEAAKVEGGVPWHAGVLQGAERFMASWHKGKEEANRQRAIKR 310          
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1228.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI001AA1A1FE3.540e-2342.31hypothetical protein n=1 Tax=Vibrio parahaemolytic... [more]
A0A6H5JTZ8_9PHAE6.810e-2342.07Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K1X4_9PHAE7.590e-2342.76Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KS82_9PHAE2.410e-2242.76Reverse transcriptase domain-containing protein (F... [more]
UPI001AA1AADC2.760e-2243.08hypothetical protein n=1 Tax=Vibrio parahaemolytic... [more]
A0A6H5KQ91_9PHAE4.490e-2244.20Reverse transcriptase domain-containing protein n=... [more]
A0A6H5KF72_9PHAE4.670e-2244.20Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KA81_9PHAE8.040e-2244.93Reverse transcriptase domain-containing protein n=... [more]
A0A6H5JCQ1_9PHAE1.240e-2143.20Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JWS4_9PHAE1.350e-2142.75Reverse transcriptase domain-containing protein n=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig1228contigA-nodosum_M_contig1228:223292..223708 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog6500.XP_005092354.1
PFAMsRVT_1
Model size417
Max annot lvl33208|Metazoa
Hectar predicted targeting categoryother localisation
Exons1
Evalue2.72e-11
EggNOG OGsKOG1075@1|root,KOG1075@2759|Eukaryota,3A35Z@33154|Opisthokonta,3BQYF@33208|Metazoa,3D7GC@33213|Bilateria
DescriptionRibonuclease H protein
Cds size417
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866656.7599645-CDS-A-nodosum_M_contig1228:223291..2237081680866656.7599645-CDS-A-nodosum_M_contig1228:223291..223708Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1228 223292..223708 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig1228.4.1prot_A-nodosum_M_contig1228.4.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig1228 223292..223708 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig1228.4.1

>prot_A-nodosum_M_contig1228.4.1 ID=prot_A-nodosum_M_contig1228.4.1|Name=mRNA_A-nodosum_M_contig1228.4.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=139bp
QNRTTDSDKRREFSYKDALHRTQCESIETTVRTRRLLWAGAILRMGDHRL
PKRVMSGELENAGKRGPGGKEKEWTDCVADDLRLFGVTGDWKTAALDPGA
WYNTVQEGGCRFMAAWVREEENASNQRQKKRRGRGGQG*
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mRNA from alignment at A-nodosum_M_contig1228:223292..223708-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig1228.4.1 ID=mRNA_A-nodosum_M_contig1228.4.1|Name=mRNA_A-nodosum_M_contig1228.4.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=417bp|location=Sequence derived from alignment at A-nodosum_M_contig1228:223292..223708- (Ascophyllum nodosum dioecious)
CAAAATCGAACTACAGACAGTGATAAAAGGAGAGAATTCTCGTACAAAGA TGCCCTTCACCGAACCCAATGCGAGAGCATCGAAACAACCGTACGCACGA GGAGGTTGTTGTGGGCGGGGGCGATACTCCGCATGGGTGACCACAGGTTA CCCAAGAGGGTCATGTCGGGAGAACTCGAGAACGCGGGGAAACGTGGACC GGGGGGGAAGGAGAAAGAGTGGACGGACTGCGTGGCAGATGATCTTCGGC TATTTGGCGTCACGGGGGACTGGAAAACCGCCGCACTCGACCCTGGGGCA TGGTACAACACCGTACAAGAAGGGGGTTGTAGGTTTATGGCCGCGTGGGT GAGGGAAGAAGAGAATGCGTCCAATCAACGGCAGAAGAAGAGACGCGGAA GAGGCGGACAAGGTTGA
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Coding sequence (CDS) from alignment at A-nodosum_M_contig1228:223292..223708-

>mRNA_A-nodosum_M_contig1228.4.1 ID=mRNA_A-nodosum_M_contig1228.4.1|Name=mRNA_A-nodosum_M_contig1228.4.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=417bp|location=Sequence derived from alignment at A-nodosum_M_contig1228:223292..223708- (Ascophyllum nodosum dioecious)
CAAAATCGAACTACAGACAGTGATAAAAGGAGAGAATTCTCGTACAAAGA
TGCCCTTCACCGAACCCAATGCGAGAGCATCGAAACAACCGTACGCACGA
GGAGGTTGTTGTGGGCGGGGGCGATACTCCGCATGGGTGACCACAGGTTA
CCCAAGAGGGTCATGTCGGGAGAACTCGAGAACGCGGGGAAACGTGGACC
GGGGGGGAAGGAGAAAGAGTGGACGGACTGCGTGGCAGATGATCTTCGGC
TATTTGGCGTCACGGGGGACTGGAAAACCGCCGCACTCGACCCTGGGGCA
TGGTACAACACCGTACAAGAAGGGGGTTGTAGGTTTATGGCCGCGTGGGT
GAGGGAAGAAGAGAATGCGTCCAATCAACGGCAGAAGAAGAGACGCGGAA
GAGGCGGACAAGGTTGA
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