mRNA_A-nodosum_M_contig1228.4.1 (mRNA) Ascophyllum nodosum dioecious
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Overview
Homology
BLAST of mRNA_A-nodosum_M_contig1228.4.1 vs. uniprot
Match: UPI001AA1A1FE (hypothetical protein n=1 Tax=Vibrio parahaemolyticus TaxID=670 RepID=UPI001AA1A1FE) HSP 1 Score: 98.6 bits (244), Expect = 3.540e-23 Identity = 55/130 (42.31%), Postives = 69/130 (53.08%), Query Frame = 1
Query: 37 FSYKDALHRTQCESIETTVRTRRLLWAGAILRMGDHRLPKRVMSGELENAGKRGPGGKEKEWTDCVADDLRLF----GVTGD-----------WKTAALDPGAWYNTVQEGGCRFMAAWVREEENASNQR 381
SY AL T+CESIETT+R RRL +AGA++R + RLP R+M G + G PGG+ K W +A+DLR+F G T D W TAA G WY + E +FM W E S QR
Sbjct: 52 LSYAKALRITRCESIETTIRKRRLFFAGAVVRQHEGRLPSRLMFGTIAGGGSPKPGGQPKTWPRAIAEDLRVFKATEGSTEDSPLVFGVGTALWPTAAKQTGKWYRGILEAAEQFMGRWHEAEAKLSRQR 181
BLAST of mRNA_A-nodosum_M_contig1228.4.1 vs. uniprot
Match: A0A6H5JTZ8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTZ8_9PHAE) HSP 1 Score: 100 bits (250), Expect = 6.810e-23 Identity = 61/145 (42.07%), Postives = 79/145 (54.48%), Query Frame = 1
Query: 31 REFSYKDALHRTQCESIETTVRTRRLLWAGAILRMGDHRLPKRVMSGELENAGKRGPGGKEKEWTDCVADDLRLFGV-------------------TGD---WKTAA-LDPGA-WYNTVQEGGCRFMAAWVREEENASNQRQKKR 393
R+FSY L R +C+S+E T+R RRLL+AGA+ R D RLPKR++ GEL KR G+E+ W CV DDL+ FG TG W AA ++ G W+ V G RFM +W +EE AS QR+ KR
Sbjct: 156 RQFSYAQTLKRVECQSVEATIRQRRLLFAGAMARQPDGRLPKRLVLGELAGGEKRRSAGQEQNWPKCVLDDLKAFGADHGSTKTDPCCLGIPVPKDTGPKLKWTEAAKVEEGVPWHAAVLMGADRFMTSWHEKEEEASRQRELKR 300
BLAST of mRNA_A-nodosum_M_contig1228.4.1 vs. uniprot
Match: A0A6H5K1X4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1X4_9PHAE) HSP 1 Score: 102 bits (255), Expect = 7.590e-23 Identity = 62/145 (42.76%), Postives = 77/145 (53.10%), Query Frame = 1
Query: 31 REFSYKDALHRTQCESIETTVRTRRLLWAGAILRMGDHRLPKRVMSGELENAGKRGPGGKEKEWTDCVADDLRLFG----------------VTGD------WKTAALDPGA--WYNTVQEGGCRFMAAWVREEENASNQRQKKR 393
R+ SY L R +C+S+E T+R RRLL+AGA+ R D RLPKR+M GEL KR GG+E+ W CV DDL+ FG V D W AA G W+ V +G RFM +W +EE AS QR KR
Sbjct: 199 RQLSYAQTLKRVECQSVEATIRQRRLLFAGALARQPDGRLPKRLMLGELAGGEKRRRGGQEQNWPKCVLDDLKAFGADHGSTNTDPCCLGIPVPNDTAPKLKWTEAAKVEGEVPWHAAVLQGAERFMTSWHEKEEEASRQRALKR 343
BLAST of mRNA_A-nodosum_M_contig1228.4.1 vs. uniprot
Match: A0A6H5KS82_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KS82_9PHAE) HSP 1 Score: 101 bits (252), Expect = 2.410e-22 Identity = 62/145 (42.76%), Postives = 76/145 (52.41%), Query Frame = 1
Query: 31 REFSYKDALHRTQCESIETTVRTRRLLWAGAILRMGDHRLPKRVMSGELENAGKRGPGGKEKEWTDCVADDLRLFGV----------------TGD------WKTAALDPGA--WYNTVQEGGCRFMAAWVREEENASNQRQKKR 393
R+ SY L R +C+S+E T+R RRLL+AGA+ R D RLPKR+M GEL KR GG+E+ W CV DDL FG T D W AA G W+ V +G RFM +W +EE AS QR KR
Sbjct: 527 RQLSYAQTLKRFECQSVEATIRQRRLLFAGALARQPDGRLPKRLMFGELAGGEKRRRGGQEQNWPKCVLDDLNAFGADHGSTKTDPCCLGIPETKDTAPKLQWTEAAKVEGGVPWHAAVLQGAERFMTSWHEKEEEASRQRALKR 671
BLAST of mRNA_A-nodosum_M_contig1228.4.1 vs. uniprot
Match: UPI001AA1AADC (hypothetical protein n=1 Tax=Vibrio parahaemolyticus TaxID=670 RepID=UPI001AA1AADC) HSP 1 Score: 96.7 bits (239), Expect = 2.760e-22 Identity = 56/130 (43.08%), Postives = 65/130 (50.00%), Query Frame = 1
Query: 37 FSYKDALHRTQCESIETTVRTRRLLWAGAILRMGDHRLPKRVMSGELENAGKRGPGGKEKEWTDCVADDLR--------------LFGV-TGDWKTAALDPGAWYNTVQEGGCRFMAAWVREEENASNQR 381
SY AL T+CESIETT+R RRL +AG + R RLP RVM G + PGG+ K W CV +DLR +FGV T W TAA G WY + E RFM W E S QR
Sbjct: 14 LSYAKALKMTRCESIETTIRKRRLFFAGGVARQSKDRLPSRVMFGTIAGGENPRPGGQVKTWHRCVVEDLREFRATEGSTELAPLVFGVETALWPTAAKKAGKWYRGILEAAERFMVRWHEAEAELSRQR 143
BLAST of mRNA_A-nodosum_M_contig1228.4.1 vs. uniprot
Match: A0A6H5KQ91_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQ91_9PHAE) HSP 1 Score: 100 bits (250), Expect = 4.490e-22 Identity = 61/138 (44.20%), Postives = 76/138 (55.07%), Query Frame = 1
Query: 31 REFSYKDALHRTQCESIETTVRTRRLLWAGAILRMGDHRLPKRVMSGELENAGKRGPGGKEKEWTDCVADDLRLF----GVTGD-----------WKTAALDPGA--WYNTVQEGGCRFMAAWVREEENASNQRQKKR 393
R+ SY AL R C+S+E TVR RRLL+AGA+ R D RLPKR+M GEL G G E+ W C+ DD+++F G T D W AA G W+ V +G RFMA+W + EE AS QR KR
Sbjct: 568 RQLSYAQALKRVGCQSVEATVRQRRLLFAGAVARQPDGRLPKRLMFGELVGGEDPGQGNPEQNWLTCLKDDMKMFEARYGSTTDKPSVFGVPKLVWSEAAKVEGGVPWHAGVLQGADRFMASWHKGEEKASRQRAIKR 705
BLAST of mRNA_A-nodosum_M_contig1228.4.1 vs. uniprot
Match: A0A6H5KF72_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF72_9PHAE) HSP 1 Score: 96.3 bits (238), Expect = 4.670e-22 Identity = 61/138 (44.20%), Postives = 75/138 (54.35%), Query Frame = 1
Query: 31 REFSYKDALHRTQCESIETTVRTRRLLWAGAILRMGDHRLPKRVMSGELENAGKRGPGGKEKEWTDCVADDLRLF----GVTGD-----------WKTAALDPGA--WYNTVQEGGCRFMAAWVREEENASNQRQKKR 393
R+ SY AL R C+S+E TVR R LL+AGA+ R D RLPKR+M GEL G G E+ W C+ DDL++F G T D W AA G W+ V +G RFMA+W + EE AS QR KR
Sbjct: 35 RQLSYAQALKRVGCQSVEATVRQRCLLFAGAMARQPDGRLPKRLMFGELVGGENPGRGSPEQNWLICLKDDLKMFEARHGSTPDKRSFFGIPKPDWDEAAKVEGGVPWHAGVLQGAERFMASWHKGEEKASRQRAIKR 172
BLAST of mRNA_A-nodosum_M_contig1228.4.1 vs. uniprot
Match: A0A6H5KA81_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KA81_9PHAE) HSP 1 Score: 100 bits (248), Expect = 8.040e-22 Identity = 62/138 (44.93%), Postives = 76/138 (55.07%), Query Frame = 1
Query: 31 REFSYKDALHRTQCESIETTVRTRRLLWAGAILRMGDHRLPKRVMSGELENAGKRGPGGKEKEWTDCVADDLRLF----GVTGD-----------WKTAALDPGA--WYNTVQEGGCRFMAAWVREEENASNQRQKKR 393
R+ SY AL R C+S+E TVR RRLL+AGA+ R D RLPKR+M GEL G G E+ W C+ DDL++F G T D W AA G W+ V +G RFMA+W + EE AS QR KR
Sbjct: 456 RQLSYAQALKRVGCQSVEATVRQRRLLFAGAVARQPDGRLPKRLMFGELVGGENPGRGSPEQNWLICLKDDLKMFEARHGSTPDKRSFFGIPKPDWDEAAKVEGGVPWHAGVLQGAERFMASWHKGEEKASRQRAIKR 593
BLAST of mRNA_A-nodosum_M_contig1228.4.1 vs. uniprot
Match: A0A6H5JCQ1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCQ1_9PHAE) HSP 1 Score: 96.7 bits (239), Expect = 1.240e-21 Identity = 54/125 (43.20%), Postives = 73/125 (58.40%), Query Frame = 1
Query: 31 REFSYKDALHRTQCE-SIETTVRTRRLLWAGAILRMGDHRLPKRVMSGELENAGKRGPGGKEKEWTDCVADDLRLFGVT-----GDWKTAALDPGAWYNTVQEGGCRFMAAWVREEENASNQRQK 387
R SY AL + CE +IE TVR RRL +AG ++RM D+RLPKR++ G + G GG+E +W C+ +DL F + G WK +A DP WYN V++G M W R E AS +RQ+
Sbjct: 125 RPLSYAQALIQAGCEETIEATVRKRRLCFAGFVMRMEDNRLPKRMLLGAM-GGGVGSRGGQESDWVSCLGEDLVAFNMGDEKEGGKWKESAKDPEVWYNKVEDGVACLMREWHRHEAEASVKRQR 248
BLAST of mRNA_A-nodosum_M_contig1228.4.1 vs. uniprot
Match: A0A6H5JWS4_9PHAE (Reverse transcriptase domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWS4_9PHAE) HSP 1 Score: 97.8 bits (242), Expect = 1.350e-21 Identity = 59/138 (42.75%), Postives = 76/138 (55.07%), Query Frame = 1
Query: 31 REFSYKDALHRTQCESIETTVRTRRLLWAGAILRMGDHRLPKRVMSGELENAGKRGPGGKEKEWTDCVADDLRLF----GVTGD-----------WKTAALDPGA--WYNTVQEGGCRFMAAWVREEENASNQRQKKR 393
R+ SY AL R C+S+E TVR RRLL+AGA+ R D RLPKR+M GEL G G E+ W C+ DD+++F G T D W AA G W+ V +G RFMA+W + +E A+ QR KR
Sbjct: 173 RQLSYAQALKRVGCQSVEATVRQRRLLFAGAVARQPDGRLPKRLMFGELVGGEDPGQGNPEQNWLTCLKDDMKMFEARYGSTTDKPSVFGVPKLVWSEAAKVEGGVPWHAGVLQGAERFMASWHKGKEEANRQRAIKR 310 The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1228.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_A-nodosum_M_contig1228.4.1 >prot_A-nodosum_M_contig1228.4.1 ID=prot_A-nodosum_M_contig1228.4.1|Name=mRNA_A-nodosum_M_contig1228.4.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=139bp QNRTTDSDKRREFSYKDALHRTQCESIETTVRTRRLLWAGAILRMGDHRLback to top mRNA from alignment at A-nodosum_M_contig1228:223292..223708- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_A-nodosum_M_contig1228.4.1 ID=mRNA_A-nodosum_M_contig1228.4.1|Name=mRNA_A-nodosum_M_contig1228.4.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=417bp|location=Sequence derived from alignment at A-nodosum_M_contig1228:223292..223708- (Ascophyllum nodosum dioecious)back to top Coding sequence (CDS) from alignment at A-nodosum_M_contig1228:223292..223708- >mRNA_A-nodosum_M_contig1228.4.1 ID=mRNA_A-nodosum_M_contig1228.4.1|Name=mRNA_A-nodosum_M_contig1228.4.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=417bp|location=Sequence derived from alignment at A-nodosum_M_contig1228:223292..223708- (Ascophyllum nodosum dioecious)back to top |