mRNA_A-nodosum_M_contig1228.2.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig1228.2.1
Unique NamemRNA_A-nodosum_M_contig1228.2.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
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BLAST of mRNA_A-nodosum_M_contig1228.2.1 vs. uniprot
Match: A0A838VSY7_9NOST (CHAT domain-containing protein n=1 Tax=Nostocaceae cyanobacterium TaxID=2723028 RepID=A0A838VSY7_9NOST)

HSP 1 Score: 47.4 bits (111), Expect = 4.610e-5
Identity = 20/34 (58.82%), Postives = 28/34 (82.35%), Query Frame = 1 
Query:    1 AESFFKRSLAIREQTLGRDHSDMAESLNNLWDFY 102
            AE  ++RSLAIRE+ LG++H D+A+SLNNL + Y
Sbjct:    5 AEPLYQRSLAIREKVLGKEHPDVAQSLNNLAELY 38
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BLAST of mRNA_A-nodosum_M_contig1228.2.1 vs. uniprot
Match: M7B7Q6_CHEMY (Nephrocystin-3 n=1 Tax=Chelonia mydas TaxID=8469 RepID=M7B7Q6_CHEMY)

HSP 1 Score: 46.6 bits (109), Expect = 8.600e-5
Identity = 22/35 (62.86%), Postives = 26/35 (74.29%), Query Frame = 1 
Query:    1 AESFFKRSLAIREQTLGRDHSDMAESLNNLWDFYS 105
            AE F KRSL +RE+ LG DHSD A+SLNNL   Y+
Sbjct: 1075 AELFLKRSLEMRERVLGPDHSDCAQSLNNLAALYN 1109
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1228.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A838VSY7_9NOST4.610e-558.82CHAT domain-containing protein n=1 Tax=Nostocaceae... [more]
M7B7Q6_CHEMY8.600e-562.86Nephrocystin-3 n=1 Tax=Chelonia mydas TaxID=8469 R... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig1228contigA-nodosum_M_contig1228:157732..157836 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog1123400.KB904753_gene1112
PFAMsCHAT,TPR_10,TPR_12,TPR_7
Model size105
Max annot lvl1224|Proteobacteria
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Evalue0.000176
EggNOG OGsCOG0457@1|root,COG0457@2|Bacteria,1MWRF@1224|Proteobacteria
DescriptionTetratricopeptide TPR_2 repeat protein
Cds size105
COG categoryU
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866656.660074-CDS-A-nodosum_M_contig1228:157731..1578361680866656.660074-CDS-A-nodosum_M_contig1228:157731..157836Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1228 157732..157836 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig1228.2.1prot_A-nodosum_M_contig1228.2.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig1228 157732..157836 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig1228.2.1

>prot_A-nodosum_M_contig1228.2.1 ID=prot_A-nodosum_M_contig1228.2.1|Name=mRNA_A-nodosum_M_contig1228.2.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=35bp
AESFFKRSLAIREQTLGRDHSDMAESLNNLWDFYS
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mRNA from alignment at A-nodosum_M_contig1228:157732..157836-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig1228.2.1 ID=mRNA_A-nodosum_M_contig1228.2.1|Name=mRNA_A-nodosum_M_contig1228.2.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=105bp|location=Sequence derived from alignment at A-nodosum_M_contig1228:157732..157836- (Ascophyllum nodosum dioecious)
GCCGAGTCGTTCTTTAAGCGTTCCTTGGCTATCCGCGAACAAACGCTAGG
TCGTGACCACTCCGATATGGCTGAAAGTCTCAACAACCTTTGGGATTTCT
ATTCA
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Coding sequence (CDS) from alignment at A-nodosum_M_contig1228:157732..157836-

>mRNA_A-nodosum_M_contig1228.2.1 ID=mRNA_A-nodosum_M_contig1228.2.1|Name=mRNA_A-nodosum_M_contig1228.2.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=105bp|location=Sequence derived from alignment at A-nodosum_M_contig1228:157732..157836- (Ascophyllum nodosum dioecious)
GCCGAGTCGTTCTTTAAGCGTTCCTTGGCTATCCGCGAACAAACGCTAGG
TCGTGACCACTCCGATATGGCTGAAAGTCTCAACAACCTTTGGGATTTCT
ATTCA
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