mRNA_A-nodosum_M_contig1227.26.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig1227.26.1
Unique NamemRNA_A-nodosum_M_contig1227.26.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1227.26.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig1227contigA-nodosum_M_contig1227:183556..184931 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D8LRH3
PFAMsBET,Bromodomain
Model size331
Max annot lvl2759|Eukaryota
KEGG koko:K11684
Hectar predicted targeting categoryother localisation
Exons2
Evalue0.000175
EggNOG OGsCOG5076@1|root,KOG1474@2759|Eukaryota
Descriptionacetylation-dependent protein binding
Cds size189
COG categoryBK
BRITEko00000,ko03036
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866656.3732536-CDS-A-nodosum_M_contig1227:183555..1836311680866656.3732536-CDS-A-nodosum_M_contig1227:183555..183631Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1227 183556..183631 -
1680866656.3929772-CDS-A-nodosum_M_contig1227:184678..1847911680866656.3929772-CDS-A-nodosum_M_contig1227:184678..184791Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1227 184679..184791 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866656.410265-UTR-A-nodosum_M_contig1227:184791..1849311680866656.410265-UTR-A-nodosum_M_contig1227:184791..184931Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig1227 184792..184931 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig1227.26.1prot_A-nodosum_M_contig1227.26.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig1227 183556..184791 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig1227.26.1

>prot_A-nodosum_M_contig1227.26.1 ID=prot_A-nodosum_M_contig1227.26.1|Name=mRNA_A-nodosum_M_contig1227.26.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=63bp
MAATSRWALGGHKMTADISSPTSVASTPSAKSPIKSKSYCMPDAQSKEAH
PDSNSKGSSSGGS
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mRNA from alignment at A-nodosum_M_contig1227:183556..184931-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig1227.26.1 ID=mRNA_A-nodosum_M_contig1227.26.1|Name=mRNA_A-nodosum_M_contig1227.26.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=1376bp|location=Sequence derived from alignment at A-nodosum_M_contig1227:183556..184931- (Ascophyllum nodosum dioecious)
CCGAGCGACGGTTTTACGGGCTGGTAAAGCTTGTGTGCGAGGGGTCCCAC
ATCCTCCATCAACGGGGTACTCAAGACTAGGCAAAGCGGTGGACAGATCT
GTGGGAACGCCCAAGGCTCCTATCACTGGTGCTTCTGGTGATGGCAGCGA
CCTCTAGGTGGGCACTCGGCGGGCACAAGATGACCGCGGATATCTCGTCT
CCGACTTCCGTGGCAAGTACTCCTTCGGCGAAGTCTCCCATCAAGTCCAA
GAGGTGAAAAATGCTTGGAGTGAATCTGAACCTATACGCCGGCCAGCACT
GTCTTTCGTGGCCCTTGCCTCGGTTACTCCTGCACCTCATTTGCCATATT
GTTCGCAGCCAGGTGTTATCCTTCTGCAGCGTTCCCACATGCTCGGTACG
CAAAAGTAGTATCTTGTGGAAATCATTTTTTTGTTGGCTCCACTGTCCAG
GGATGGAGTATAGTATTAATATACGTAATAGTACAACTTCGGAGAGACAC
ATACATCTACAGCAATATTTGTACTGAAAGTAAAGTTGGAGCCATACCTT
GAGCTCTCGGTCTAATTCTAGATTCGGGGACCTCCGTCCATCAATAATCC
TTGTTAACAACGTCAGAAAAGCCCCGTAGCTCCTAGGAACGGCGCTCTTG
ATTGATTGACCGATTGCTGATTTCAACGTCTGCACGCCCACGAGGAAGCG
CTGTACCGCACGTAGATCGTAAGACTTATCATGCTCGTATCAAACACCAG
AGAGGTGGTTGTCAAGTTTTCGCGCGTTCCGTTTATCAATTTTTGAAAAT
GCGAATGTTTGAAATCTTTGAAGGTGGGCTCTCGATATCTCGGCTTTTCG
CCCATGCAGCGATGTACACCCCAAGCAGTATTGGCATTTGATAGGTCTAT
GGCTGACTTGTTGTGTCACCGTAGTTTCTTCAGTTGCAAGGACAATTCGC
TGAATGCGTGAATCAACAAGGTCAGAAGGTCTTGATGCGTTCAATTTTTT
CTTAAAACACCCAGAAGACCCGCTCACACAAGTCACATACAGTCTAATAT
ATTATTAGTACGATGTTATATATTAGTAACTTGTGTACTGGTGCTTGTAG
TTACTATCATAACTGCTGTCTCTCCACACACACACGTGCTTCTCCTCTCC
TCTCACTTGGTCTCGTTAAGTTATGTTTAATGTTGTACGAGTAGAGTACC
GCTGTAGTACAACTTTTAAGTAGTACGACCTCTGTTAACCGCATTCTGTT
TGTGCTGTACTGTACATCCTTTTGCTCGACTACCCCGGTACCGTGTTCAG
CTACTGCATGCCAGACGCACAGAGTAAGGAAGCTCATCCGGATTCCAATT
CTAAGGGCAGCAGCAGTGGCGGGAGC
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Coding sequence (CDS) from alignment at A-nodosum_M_contig1227:183556..184931-

>mRNA_A-nodosum_M_contig1227.26.1 ID=mRNA_A-nodosum_M_contig1227.26.1|Name=mRNA_A-nodosum_M_contig1227.26.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=189bp|location=Sequence derived from alignment at A-nodosum_M_contig1227:183556..184931- (Ascophyllum nodosum dioecious)
ATGGCAGCGACCTCTAGGTGGGCACTCGGCGGGCACAAGATGACCGCGGA
TATCTCGTCTCCGACTTCCGTGGCAAGTACTCCTTCGGCGAAGTCTCCCA
TCAAGTCCAAGAGCTACTGCATGCCAGACGCACAGAGTAAGGAAGCTCAT
CCGGATTCCAATTCTAAGGGCAGCAGCAGTGGCGGGAGC
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