mRNA_A-nodosum_M_contig1227.21.2 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig1227.21.2
Unique NamemRNA_A-nodosum_M_contig1227.21.2
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
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BLAST of mRNA_A-nodosum_M_contig1227.21.2 vs. uniprot
Match: D8LRH8_ECTSI (Methionine--tRNA ligase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LRH8_ECTSI)

HSP 1 Score: 86.7 bits (213), Expect = 1.380e-18
Identity = 40/51 (78.43%), Postives = 45/51 (88.24%), Query Frame = 3 
Query:    3 EAVYMVSHFLVAFLPTACSRVFDKLGLPPVAIGSLKADFTNIPPGTKLTVG 155
            EAVY V+H LVAFLPTAC+RVF+KLGLPPV I SLK DF+NIP GTK+TVG
Sbjct:  567 EAVYCVAHLLVAFLPTACTRVFEKLGLPPVPIASLKPDFSNIPAGTKVTVG 617
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1227.21.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LRH8_ECTSI1.380e-1878.43Methionine--tRNA ligase n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig1227contigA-nodosum_M_contig1227:168433..168837 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size157
Hectar predicted targeting categorysignal peptide
Exons2
Cds size156
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866655.4760225-CDS-A-nodosum_M_contig1227:168433..1685111680866655.4760225-CDS-A-nodosum_M_contig1227:168433..168511Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1227 168434..168511 -
1680866655.4867191-CDS-A-nodosum_M_contig1227:168759..1688371680866655.4867191-CDS-A-nodosum_M_contig1227:168759..168837Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1227 168760..168837 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig1227.21.2prot_A-nodosum_M_contig1227.21.2Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig1227 168434..168837 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig1227.21.2

>prot_A-nodosum_M_contig1227.21.2 ID=prot_A-nodosum_M_contig1227.21.2|Name=mRNA_A-nodosum_M_contig1227.21.2|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=52bp
WRLCTWCRTFWWPSCPPLAAASSTSLVFLPLRLAPSRRISPTSRQAPSSR
WA
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mRNA from alignment at A-nodosum_M_contig1227:168433..168837-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig1227.21.2 ID=mRNA_A-nodosum_M_contig1227.21.2|Name=mRNA_A-nodosum_M_contig1227.21.2|organism=Ascophyllum nodosum dioecious|type=mRNA|length=405bp|location=Sequence derived from alignment at A-nodosum_M_contig1227:168433..168837- (Ascophyllum nodosum dioecious)
TGGAGGCTGTGTACATGGTGTCGCACTTTCTGGTGGCCTTCTTGCCCACC
GCTTGCAGCCGCGTCTTCGACAAGCTTGGTGAGAAGGGACATAAGACACC
ATGACACACCGTGACACACCATGGCAGTCAGATCAGGAGTTCCAAGCGGA
ACGGCTCTGGCTAAGACGATAGCAGTCGCAAACCTTTGCCACGGTAGTGC
AGTATTAATTGTACAGCAGACGGATCAAAAATATATCTGGCTAAGTTCCC
CTACAGGAAATCCTCTGACGCGTGCTGGCCCCTCGACTCGACTCGACTCG
ACTCGACTGTTAATATTGTACTCCAGGTCTTCCTCCCGTTGCGATTGGCT
CCCTCAAGGCGGATTTCACCAACATCCCGCCAGGCACCAAGCTCACGGTG
GGCTC
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Coding sequence (CDS) from alignment at A-nodosum_M_contig1227:168433..168837-

>mRNA_A-nodosum_M_contig1227.21.2 ID=mRNA_A-nodosum_M_contig1227.21.2|Name=mRNA_A-nodosum_M_contig1227.21.2|organism=Ascophyllum nodosum dioecious|type=CDS|length=156bp|location=Sequence derived from alignment at A-nodosum_M_contig1227:168433..168837- (Ascophyllum nodosum dioecious)
TGGAGGCTGTGTACATGGTGTCGCACTTTCTGGTGGCCTTCTTGCCCACC
GCTTGCAGCCGCGTCTTCGACAAGCTTGGTCTTCCTCCCGTTGCGATTGG
CTCCCTCAAGGCGGATTTCACCAACATCCCGCCAGGCACCAAGCTCACGG
TGGGCT
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