mRNA_A-nodosum_M_contig1227.14.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig1227.14.1
Unique NamemRNA_A-nodosum_M_contig1227.14.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1227.14.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig1227contigA-nodosum_M_contig1227:136853..137470 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size216
Hectar predicted targeting categoryother localisation
Exons2
Cds size216
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866655.4358072-CDS-A-nodosum_M_contig1227:136852..1369771680866655.4358072-CDS-A-nodosum_M_contig1227:136852..136977Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1227 136853..136977 -
1680866655.445605-CDS-A-nodosum_M_contig1227:137379..1374701680866655.445605-CDS-A-nodosum_M_contig1227:137379..137470Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1227 137380..137470 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig1227.14.1prot_A-nodosum_M_contig1227.14.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig1227 136853..137470 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig1227.14.1

>prot_A-nodosum_M_contig1227.14.1 ID=prot_A-nodosum_M_contig1227.14.1|Name=mRNA_A-nodosum_M_contig1227.14.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=72bp
TDAAPYGRNGGRNPPDHRSRRRCGCCYSKPAGTSPKRIEFSFQKEIEGRR
SEGREQEGRGVQERWEQRRQV*
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mRNA from alignment at A-nodosum_M_contig1227:136853..137470-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig1227.14.1 ID=mRNA_A-nodosum_M_contig1227.14.1|Name=mRNA_A-nodosum_M_contig1227.14.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=618bp|location=Sequence derived from alignment at A-nodosum_M_contig1227:136853..137470- (Ascophyllum nodosum dioecious)
ACGGATGCAGCGCCGTATGGCCGAAATGGAGGCAGAAATCCTCCGGATCA
CCGCAGCCGCCGCCGCTGCGGGTGTTGTTACTCCAAGCCAGGTGGGGATG
ACGTATAAAACGTTTGGTTGTGTTCAAATATAAATCGGAGTGAGATAAAC
AACTTTTCCGCGGTTTGTTGTGTTGAACAATTGAGAGGCGCGAGAGCAGC
GTAAGAGAGCGTTTCGCCGCTGTTAGGTCTTCTGCCCGGCCATAGGTGGA
GGATTGAGGTAAATTATAGTATTTTGGAGGGGTTTTTTTGTATAGCCAAG
CATCGTTTTTCTCTGTTTATTGGTTTATGCTCGCTTTCTTAACGGTACTT
AGGTACTTAGCTCTATACAAGTAGTGGAGATACTGTTTTAGTAATGTTGT
AGATGGGGTACAGTTAGTTTGCGCCTTCCATGACTGAGACGCCCTCTCCG
CACGCCGTTATACCCCTCGTGGACCTATCTTGATCTCATGTAGCCGGAAC
CTCTCCAAAAAGAATCGAGTTCAGCTTCCAAAAAGAAATCGAAGGGCGGC
GCAGCGAAGGCCGGGAACAAGAAGGGCGGGGGGTCCAAGAAAGGTGGGAA
CAGAGGCGCCAAGTCTGA
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Coding sequence (CDS) from alignment at A-nodosum_M_contig1227:136853..137470-

>mRNA_A-nodosum_M_contig1227.14.1 ID=mRNA_A-nodosum_M_contig1227.14.1|Name=mRNA_A-nodosum_M_contig1227.14.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=216bp|location=Sequence derived from alignment at A-nodosum_M_contig1227:136853..137470- (Ascophyllum nodosum dioecious)
ACGGATGCAGCGCCGTATGGCCGAAATGGAGGCAGAAATCCTCCGGATCA
CCGCAGCCGCCGCCGCTGCGGGTGTTGTTACTCCAAGCCAGCCGGAACCT
CTCCAAAAAGAATCGAGTTCAGCTTCCAAAAAGAAATCGAAGGGCGGCGC
AGCGAAGGCCGGGAACAAGAAGGGCGGGGGGTCCAAGAAAGGTGGGAACA
GAGGCGCCAAGTCTGA
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