mRNA_A-nodosum_M_contig1227.13.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig1227.13.1
Unique NamemRNA_A-nodosum_M_contig1227.13.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
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BLAST of mRNA_A-nodosum_M_contig1227.13.1 vs. uniprot
Match: D8LRH3_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LRH3_ECTSI)

HSP 1 Score: 72.4 bits (176), Expect = 1.620e-11
Identity = 39/59 (66.10%), Postives = 47/59 (79.66%), Query Frame = 1 
Query:    1 RVVEIIQASMPLGSADEEIEVDIDTMDNSTLRELQSYIMELS--ASGSRQNGGADSDAD 171
            RVVEIIQA MPLGS+DEEIE+DID+MDN TLR+LQ +I ++S    G R  GG DSD+D
Sbjct: 1085 RVVEIIQARMPLGSSDEEIELDIDSMDNLTLRDLQGFIKDVSDKGGGRRGGGGVDSDSD 1143
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BLAST of mRNA_A-nodosum_M_contig1227.13.1 vs. uniprot
Match: A0A0L0DUH3_THETB (Bromodomain containing protein n=1 Tax=Thecamonas trahens ATCC 50062 TaxID=461836 RepID=A0A0L0DUH3_THETB)

HSP 1 Score: 53.9 bits (128), Expect = 3.610e-5
Identity = 26/43 (60.47%), Postives = 35/43 (81.40%), Query Frame = 1 
Query:    1 RVVEIIQASMPLGSADEEIEVDIDTMDNSTLRELQSYIMELSA 129
            RV+EII+ SMPL + DEEIE+DID +DN TLR+L++Y+ E  A
Sbjct:  723 RVIEIIKESMPLENQDEEIEIDIDALDNKTLRKLEAYVNECLA 765
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1227.13.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LRH3_ECTSI1.620e-1166.10Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A0L0DUH3_THETB3.610e-560.47Bromodomain containing protein n=1 Tax=Thecamonas ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig1227contigA-nodosum_M_contig1227:136106..136656 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LRH3
PFAMsBET,Bromodomain
Model size551
Max annot lvl2759|Eukaryota
KEGG koko:K11684
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Evalue1.31e-09
EggNOG OGsCOG5076@1|root,KOG1474@2759|Eukaryota
Descriptionacetylation-dependent protein binding
Cds size153
COG categoryBK
BRITEko00000,ko03036
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866656.2092366-UTR-A-nodosum_M_contig1227:136105..1364761680866656.2092366-UTR-A-nodosum_M_contig1227:136105..136476Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig1227 136106..136476 -
1680866656.229219-UTR-A-nodosum_M_contig1227:136629..1366561680866656.229219-UTR-A-nodosum_M_contig1227:136629..136656Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig1227 136630..136656 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866656.2199996-CDS-A-nodosum_M_contig1227:136476..1366291680866656.2199996-CDS-A-nodosum_M_contig1227:136476..136629Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1227 136477..136629 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig1227.13.1prot_A-nodosum_M_contig1227.13.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig1227 136477..136629 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig1227.13.1

>prot_A-nodosum_M_contig1227.13.1 ID=prot_A-nodosum_M_contig1227.13.1|Name=mRNA_A-nodosum_M_contig1227.13.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=51bp
MPLGSADEEIEVDIDTMDNSTLRELQSYIMELSASGSRQNGGADSDADAW
*
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mRNA from alignment at A-nodosum_M_contig1227:136106..136656-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig1227.13.1 ID=mRNA_A-nodosum_M_contig1227.13.1|Name=mRNA_A-nodosum_M_contig1227.13.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=551bp|location=Sequence derived from alignment at A-nodosum_M_contig1227:136106..136656- (Ascophyllum nodosum dioecious)
CGTGTCGTCGAGATAATTCAGGCAAGCATGCCTCTAGGAAGCGCCGACGA
AGAAATTGAAGTCGACATCGATACCATGGACAACTCAACACTGCGTGAAC
TTCAGTCATACATTATGGAACTCAGTGCGAGCGGCTCTCGTCAAAATGGG
GGCGCCGATTCCGACGCGGATGCGTGGTGATCCTGTGACAATCCATGGTG
ACACTTGAATTTGCGTTGGAATCTTAGTTGTGCTCGTCGTAGGATCGTAG
GCGCTTAGGTCGTATCAAGGTTACAGGATGCTGTCGAGATATAGTAGTGG
TTTATGACGAAAAGTATTGGATGTCGACACGCTCCTTTTTCGATTCGCTG
AGTTCGGAGAGGAAGCTGAGCTCTACTCGTTTTTGTACTTACACTGCGTG
CACCCTCACATGACATGAGACATCATATCATATGACATGCACCGCAATGG
TGCAACGAGGTGTGGCACGCACGGAACATTGGAATATTTTTGTTTCAAGA
CACTTGGTTGACGCTTTTCTGTTGAGAGATCTTTTTCCTCGCGCCCGAGT
T
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Coding sequence (CDS) from alignment at A-nodosum_M_contig1227:136106..136656-

>mRNA_A-nodosum_M_contig1227.13.1 ID=mRNA_A-nodosum_M_contig1227.13.1|Name=mRNA_A-nodosum_M_contig1227.13.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=153bp|location=Sequence derived from alignment at A-nodosum_M_contig1227:136106..136656- (Ascophyllum nodosum dioecious)
ATGCCTCTAGGAAGCGCCGACGAAGAAATTGAAGTCGACATCGATACCAT
GGACAACTCAACACTGCGTGAACTTCAGTCATACATTATGGAACTCAGTG
CGAGCGGCTCTCGTCAAAATGGGGGCGCCGATTCCGACGCGGATGCGTGG
TGA
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