mRNA_A-nodosum_M_contig12264.1.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig12264.1.1
Unique NamemRNA_A-nodosum_M_contig12264.1.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
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BLAST of mRNA_A-nodosum_M_contig12264.1.1 vs. uniprot
Match: A0A6P0N5L4_9CYAN (Patatin-like protein n=1 Tax=Moorena sp. SIO3C2 TaxID=2607842 RepID=A0A6P0N5L4_9CYAN)

HSP 1 Score: 72.4 bits (176), Expect = 3.250e-13
Identity = 31/68 (45.59%), Postives = 42/68 (61.76%), Query Frame = 1 
Query:    4 ELVGDLAAFVTLVFSSCVLPQVFWTLHTSANLSVLEQNTRPVAYGDVLRRVTGAVFCRRYGRELTDYF 207
            EL   +A   +++F    LP  FW LHTSANLS +    RP+A GD+ RR+ G V CR+YG  L ++F
Sbjct: 1193 ELCEAIAKLCSVIFDGSHLPDSFWQLHTSANLSAIGDKCRPIAVGDLFRRIVGGVICRQYGPSLAEHF 1260
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BLAST of mRNA_A-nodosum_M_contig12264.1.1 vs. uniprot
Match: A0A6H5LN63_9PHAE (Reverse transcriptase domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LN63_9PHAE)

HSP 1 Score: 60.5 bits (145), Expect = 5.160e-9
Identity = 32/70 (45.71%), Postives = 38/70 (54.29%), Query Frame = 1 
Query:    1 DELVGDLAAFVTLVFS-SCVLPQVFWTLHTSANLSVLEQNTRPVAYGDVLRRVTGAVFCRRYGRELTDYF 207
            D     LA F   VF     LP  FW LHTSANLS L +  RP+A G VLRR+    FCR+Y   + + F
Sbjct:  155 DSFTETLADFSFKVFYYGDELPDFFWNLHTSANLSALGEKKRPIAVGGVLRRIISGSFCRQYKGGIANIF 224
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BLAST of mRNA_A-nodosum_M_contig12264.1.1 vs. uniprot
Match: A0A6H5KQ62_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQ62_9PHAE)

HSP 1 Score: 59.7 bits (143), Expect = 9.240e-9
Identity = 26/50 (52.00%), Postives = 32/50 (64.00%), Query Frame = 1 
Query:   58 LPQVFWTLHTSANLSVLEQNTRPVAYGDVLRRVTGAVFCRRYGRELTDYF 207
            LP  FW LHTSANLS L +  RP+A G VLRR+    FCR+Y   + + F
Sbjct:  175 LPDFFWNLHTSANLSALGEKKRPIAVGGVLRRIISGSFCRQYKGGIANIF 224
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BLAST of mRNA_A-nodosum_M_contig12264.1.1 vs. uniprot
Match: A0A6H5KSY9_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSY9_9PHAE)

HSP 1 Score: 59.7 bits (143), Expect = 9.430e-9
Identity = 26/50 (52.00%), Postives = 32/50 (64.00%), Query Frame = 1 
Query:   58 LPQVFWTLHTSANLSVLEQNTRPVAYGDVLRRVTGAVFCRRYGRELTDYF 207
            LP  FW LHTSANLS L +  RP+A G VLRR+    FCR+Y   + + F
Sbjct:   23 LPDFFWNLHTSANLSALGEKKRPIAVGGVLRRIISGSFCRQYKGGIANIF 72
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BLAST of mRNA_A-nodosum_M_contig12264.1.1 vs. uniprot
Match: A0A6H5JCM0_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCM0_9PHAE)

HSP 1 Score: 59.7 bits (143), Expect = 9.600e-9
Identity = 26/50 (52.00%), Postives = 32/50 (64.00%), Query Frame = 1 
Query:   58 LPQVFWTLHTSANLSVLEQNTRPVAYGDVLRRVTGAVFCRRYGRELTDYF 207
            LP  FW LHTSANLS L +  RP+A G VLRR+    FCR+Y   + + F
Sbjct:  175 LPDFFWNLHTSANLSALGEKKRPIAVGGVLRRIISGSFCRQYKGGIANIF 224
[Close]
BLAST of mRNA_A-nodosum_M_contig12264.1.1 vs. uniprot
Match: A0A6H5KGJ4_9PHAE (Reverse transcriptase domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGJ4_9PHAE)

HSP 1 Score: 57.8 bits (138), Expect = 4.540e-8
Identity = 25/50 (50.00%), Postives = 31/50 (62.00%), Query Frame = 1 
Query:   58 LPQVFWTLHTSANLSVLEQNTRPVAYGDVLRRVTGAVFCRRYGRELTDYF 207
            LP  FW LHTSANLS L +  RP+A G VLRR+    FC +Y   + + F
Sbjct:  175 LPDFFWNLHTSANLSALGEKKRPIAVGGVLRRIISGSFCHQYKGGIANIF 224
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig12264.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A6P0N5L4_9CYAN3.250e-1345.59Patatin-like protein n=1 Tax=Moorena sp. SIO3C2 Ta... [more]
A0A6H5LN63_9PHAE5.160e-945.71Reverse transcriptase domain-containing protein n=... [more]
A0A6H5KQ62_9PHAE9.240e-952.00Reverse transcriptase domain-containing protein (F... [more]
A0A6H5KSY9_9PHAE9.430e-952.00Reverse transcriptase domain-containing protein (F... [more]
A0A6H5JCM0_9PHAE9.600e-952.00Reverse transcriptase domain-containing protein (F... [more]
A0A6H5KGJ4_9PHAE4.540e-850.00Reverse transcriptase domain-containing protein n=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig12264contigA-nodosum_M_contig12264:741..950 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size210
Hectar predicted targeting categorysignal peptide
Exons1
Cds size210
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866655.405133-CDS-A-nodosum_M_contig12264:740..9501680866655.405133-CDS-A-nodosum_M_contig12264:740..950Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig12264 741..950 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig12264.1.1prot_A-nodosum_M_contig12264.1.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig12264 741..950 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig12264.1.1

>prot_A-nodosum_M_contig12264.1.1 ID=prot_A-nodosum_M_contig12264.1.1|Name=mRNA_A-nodosum_M_contig12264.1.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=70bp
DELVGDLAAFVTLVFSSCVLPQVFWTLHTSANLSVLEQNTRPVAYGDVLR
RVTGAVFCRRYGRELTDYF*
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mRNA from alignment at A-nodosum_M_contig12264:741..950+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig12264.1.1 ID=mRNA_A-nodosum_M_contig12264.1.1|Name=mRNA_A-nodosum_M_contig12264.1.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=210bp|location=Sequence derived from alignment at A-nodosum_M_contig12264:741..950+ (Ascophyllum nodosum dioecious)
GATGAACTGGTCGGTGATCTCGCGGCGTTTGTGACGCTTGTCTTTTCCAG
CTGCGTTTTGCCCCAAGTATTCTGGACACTGCACACAAGCGCTAACCTTT
CCGTGTTGgaGCAAAATACGAGACCAGTGGCGTACGGTGATGTCTTGCGG
AGAGTTACTGGCGCTGTTTTCTGCCGCCGATACGGCAGGGAGCTCACAGA
CTACTTCTAG
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Coding sequence (CDS) from alignment at A-nodosum_M_contig12264:741..950+

>mRNA_A-nodosum_M_contig12264.1.1 ID=mRNA_A-nodosum_M_contig12264.1.1|Name=mRNA_A-nodosum_M_contig12264.1.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=210bp|location=Sequence derived from alignment at A-nodosum_M_contig12264:741..950+ (Ascophyllum nodosum dioecious)
GATGAACTGGTCGGTGATCTCGCGGCGTTTGTGACGCTTGTCTTTTCCAG
CTGCGTTTTGCCCCAAGTATTCTGGACACTGCACACAAGCGCTAACCTTT
CCGTGTTGgaGCAAAATACGAGACCAGTGGCGTACGGTGATGTCTTGCGG
AGAGTTACTGGCGCTGTTTTCTGCCGCCGATACGGCAGGGAGCTCACAGA
CTACTTCTAG
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