mRNA_A-nodosum_M_contig1226.10.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig1226.10.1
Unique NamemRNA_A-nodosum_M_contig1226.10.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
BLAST of mRNA_A-nodosum_M_contig1226.10.1 vs. uniprot
Match: A0A392PD17_9FABA (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=2 Tax=Trifolium TaxID=3898 RepID=A0A392PD17_9FABA)

HSP 1 Score: 123 bits (309), Expect = 6.450e-32
Identity = 59/144 (40.97%), Postives = 86/144 (59.72%), Query Frame = 1
Query:   19 NGVWVQVEHPKGKTVLGTKTLFKRDIRKDGQIEKYKCCFVTQGFRQVKGLHYHESSSPTPTASSMRVVLATAAVKNWELRHIDVEQAYLQADIDEQIYIELPEDYRAF-PNAVGLPRKAIYGLVQSGLCWFRKFTDGIKKKGFK 447
            NG W     PKGK  LG K ++K     DG IE+YK   V  G  QV+G+ Y+E+ +P     ++R+VLA AA K WE+  +DV  A+L  D+ E++Y++ P  +R F P  V   +K++YGL Q+  CWF K +  +KK GF+
Sbjct:    1 NGTWTLQPLPKGKKPLGCKWVYKIKHNSDGTIERYKARLVIFGNHQVEGIDYNETFAPVAKMVTVRLVLAVAAAKKWEIHQMDVHNAFLHGDLHEEVYMKPPPGFRTFQPGLVCKLKKSLYGLKQAPRCWFAKLSSALKKFGFR 144          
BLAST of mRNA_A-nodosum_M_contig1226.10.1 vs. uniprot
Match: A0A2I0I890_PUNGR (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Punica granatum TaxID=22663 RepID=A0A2I0I890_PUNGR)

HSP 1 Score: 119 bits (298), Expect = 1.520e-31
Identity = 56/144 (38.89%), Postives = 84/144 (58.33%), Query Frame = 1
Query:   16 NNGVWVQVEHPKGKTVLGTKTLFKRDIRKDGQIEKYKCCFVTQGFRQVKGLHYHESSSPTPTASSMRVVLATAAVKNWELRHIDVEQAYLQADIDEQIYIELPEDYR-AFPNAVGLPRKAIYGLVQSGLCWFRKFTDGIKKKGF 444
            +NG W  +  P GK  +G K +FK   R DG IE YK C V +GF Q++G+ +HE+ +P     ++R +L  A  K WE+  +DV  A+L  D++E++Y+ LP  +R A  + V   RK++YGL Q+   W+ KF   I   GF
Sbjct:   10 DNGTWAALSLPPGKKPIGCKWVFKIKRRADGTIECYKACLVAKGFTQIEGVDFHETFAPVAKLVTVRYLLTIAVAKKWEMHKLDVNNAFLHGDLNEEVYLSLPPSFRSATTSQVCRLRKSLYGLRQASRNWYSKFATTIIHYGF 153          
BLAST of mRNA_A-nodosum_M_contig1226.10.1 vs. uniprot
Match: A0A0C2WN23_AMAMK (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Amanita muscaria (strain Koide BX008) TaxID=946122 RepID=A0A0C2WN23_AMAMK)

HSP 1 Score: 125 bits (314), Expect = 1.730e-30
Identity = 55/141 (39.01%), Postives = 96/141 (68.09%), Query Frame = 1
Query:   22 GVWVQVEHPKGKTVLGTKTLFKRDIRKDGQIEKYKCCFVTQGFRQVKGLHYHESSSPTPTASSMRVVLATAAVKNWELRHIDVEQAYLQADIDEQIYIELPEDYRAFPNAVGLPRKAIYGLVQSGLCWFRKFTDGIKKKGF 444
            GV+ +V  P+ + ++G+K +FK     DGQ+EKYK   V QGF QV+G+ Y+E+ +P   ++S+R++LA AA  +WE+  +DV+ A+L  +++E+IY+++P  ++A  +AV   +KA+YGL Q+   W++K +  +K  GF
Sbjct: 1025 GVFEEVPRPRDRKIIGSKWVFKTKTGPDGQVEKYKARLVAQGFSQVEGIDYNETFAPVTKSNSIRLLLALAARHDWEIHQMDVKSAFLNGELEEEIYMKVPPGHKASADAVWRLKKALYGLKQASREWYKKLSAELKTLGF 1165          
BLAST of mRNA_A-nodosum_M_contig1226.10.1 vs. uniprot
Match: A0A151QVI1_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=1 Tax=Cajanus cajan TaxID=3821 RepID=A0A151QVI1_CAJCA)

HSP 1 Score: 125 bits (313), Expect = 2.270e-30
Identity = 55/145 (37.93%), Postives = 92/145 (63.45%), Query Frame = 1
Query:   16 NNGVWVQVEHPKGKTVLGTKTLFKRDIRKDGQIEKYKCCFVTQGFRQVKGLHYHESSSPTPTASSMRVVLATAAVKNWELRHIDVEQAYLQADIDEQIYIELPEDY-RAFPNAVGLPRKAIYGLVQSGLCWFRKFTDGIKKKGFK 447
            +N  W     P+GK+ +G K ++K   R DG IE+YK C V +G+ Q++G+ YH++ +P     ++R++L+ AA+KNW L  +DV  A+LQ D++E++Y++LP  + R     V    K+IYGL Q+   WF KF+  + ++GF+
Sbjct:  648 SNNTWSLCPLPQGKSSIGCKWVYKIKYRSDGSIERYKACLVAKGYTQIEGIDYHDTFAPVAKLVTVRLLLSIAAIKNWSLHQLDVNNAFLQGDLNEEVYMKLPPGFSRKGETYVCKLHKSIYGLKQASRQWFSKFSTTLIQRGFR 792          
BLAST of mRNA_A-nodosum_M_contig1226.10.1 vs. uniprot
Match: A0A2Z6LQC0_TRISU (Integrase catalytic domain-containing protein n=3 Tax=Trifolium TaxID=3898 RepID=A0A2Z6LQC0_TRISU)

HSP 1 Score: 125 bits (313), Expect = 2.330e-30
Identity = 61/145 (42.07%), Postives = 84/145 (57.93%), Query Frame = 1
Query:   16 NNGVWVQVEHPKGKTVLGTKTLFKRDIRKDGQIEKYKCCFVTQGFRQVKGLHYHESSSPTPTASSMRVVLATAAVKNWELRHIDVEQAYLQADIDEQIYIELPED-YRAFPNAVGLPRKAIYGLVQSGLCWFRKFTDGIKKKGFK 447
            NN  W     P GK  +G K ++K     DG IE+YK   V  G  QV+GL Y+E+ +P     ++R  LA AA +NWEL  +DV  A+L  D++E+IY++LP   Y + PN     RK++YGL Q+  CWF K    +KK GFK
Sbjct:  768 NNNTWTIETLPHGKKSIGCKWVYKIKYHSDGSIERYKARLVILGNNQVEGLDYNETFAPVAKMVTVRTFLAVAAARNWELHQMDVHNAFLHGDLEEEIYMKLPPGFYSSAPNQACRLRKSLYGLKQAPRCWFAKLAAALKKYGFK 912          
BLAST of mRNA_A-nodosum_M_contig1226.10.1 vs. uniprot
Match: A0A2K3MX29_TRIPR (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=1 Tax=Trifolium pratense TaxID=57577 RepID=A0A2K3MX29_TRIPR)

HSP 1 Score: 124 bits (311), Expect = 4.310e-30
Identity = 58/145 (40.00%), Postives = 90/145 (62.07%), Query Frame = 1
Query:   16 NNGVWVQVEHPKGKTVLGTKTLFKRDIRKDGQIEKYKCCFVTQGFRQVKGLHYHESSSPTPTASSMRVVLATAAVKNWELRHIDVEQAYLQADIDEQIYIELPEDY-RAFPNAVGLPRKAIYGLVQSGLCWFRKFTDGIKKKGFK 447
            +NG W   + P GK  +G K ++K     DG IE++K   V  G RQV+G+ Y+E+ +PT    ++R  LA AA KN++L  +DV  A+L  D+DE++Y++LP  + +  P+ V   RK++YGL Q+  CWF K ++ +K  GFK
Sbjct:  716 DNGTWTIEDLPSGKKAIGCKWIYKIKYNSDGSIERHKARLVIHGNRQVEGVDYNETFAPTAKMVTVRTFLAVAAAKNFQLHQMDVRNAFLHGDLDEEVYMKLPPGFDKQPPSKVCRLRKSLYGLKQAPRCWFAKLSEALKAYGFK 860          
BLAST of mRNA_A-nodosum_M_contig1226.10.1 vs. uniprot
Match: M4CW55_BRARP (Integrase catalytic domain-containing protein n=1 Tax=Brassica rapa subsp. pekinensis TaxID=51351 RepID=M4CW55_BRARP)

HSP 1 Score: 124 bits (310), Expect = 5.890e-30
Identity = 60/149 (40.27%), Postives = 91/149 (61.07%), Query Frame = 1
Query:   19 NGVWVQVEHPKGKTVLGTKTLFKRDIRKDGQIEKYKCCFVTQGFRQVKGLHYHESSSPTPTASSMRVVLATAAVKNWELRHIDVEQAYLQADIDEQIYIELPEDY-----RAFP-NAVGLPRKAIYGLVQSGLCWFRKFTDGIKKKGFK 447
            N  W+    P+GK  +G K +FK  +  DG +E+YK   V +G+ Q +G+ Y E+ SP    S+++++LA AA KNW L  +DV  A+L  D+DE+IY+ LP  Y      +FP NAV   +K++YGL Q+   WF KF++ + + GFK
Sbjct:  742 NNTWLVCSLPEGKRAVGCKWVFKVKLNADGTLERYKARLVAKGYTQQEGIDYVETFSPVAKLSTVKLLLAVAAAKNWSLSQLDVSNAFLNGDLDEEIYMSLPPGYSPRQGESFPPNAVCKLKKSLYGLKQASRQWFLKFSETLLQMGFK 890          
BLAST of mRNA_A-nodosum_M_contig1226.10.1 vs. uniprot
Match: A0A438HIN6_VITVI (Retrovirus-related Pol polyprotein from transposon RE2 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438HIN6_VITVI)

HSP 1 Score: 120 bits (301), Expect = 6.030e-30
Identity = 58/143 (40.56%), Postives = 84/143 (58.74%), Query Frame = 1
Query:   19 NGVWVQVEHPKGKTVLGTKTLFKRDIRKDGQIEKYKCCFVTQGFRQVKGLHYHESSSPTPTASSMRVVLATAAVKNWELRHIDVEQAYLQADIDEQIYIELPEDY-RAFPNAVGLPRKAIYGLVQSGLCWFRKFTDGIKKKGF 444
            NG W     PKGK  LG++ +++     +G IE+ K   V  G  Q  G+ YHE+ SP    +++R  LA AA KNWEL  +DV  A+L  D++E++Y++LP  + R+ PN V   RK++YGL Q+  CWF K    +K  GF
Sbjct:   11 NGTWTLEPLPKGKRALGSQWVYRTKYFSNGDIERLKSRLVVLGNHQEAGIDYHETFSPVAKMTTVRAFLAIAASKNWELHQMDVHNAFLHGDLEEEVYMKLPPGFERSDPNLVCRLRKSLYGLKQAPRCWFSKLVTALKGYGF 153          
BLAST of mRNA_A-nodosum_M_contig1226.10.1 vs. uniprot
Match: A0A2Z7APK6_9LAMI (Cysteine-rich RLK (Receptor-like protein kinase) 8 n=2 Tax=Dorcoceras hygrometricum TaxID=472368 RepID=A0A2Z7APK6_9LAMI)

HSP 1 Score: 116 bits (290), Expect = 1.030e-29
Identity = 51/149 (34.23%), Postives = 89/149 (59.73%), Query Frame = 1
Query:    1 MNGQINNGVWVQVEHPKGKTVLGTKTLFKRDIRKDGQIEKYKCCFVTQGFRQVKGLHYHESSSPTPTASSMRVVLATAAVKNWELRHIDVEQAYLQADIDEQIYIELPEDY-RAFPNAVGLPRKAIYGLVQSGLCWFRKFTDGIKKKGF 444
            MN    +G W  V  P+GK  +G K +F   +++DG +E+YK   V +GF Q  G+ Y E+ +P    +++R++L+ AA  +W L  +DV+ A+L  D+ E+++++ P  + + F   +   +K+ YGL QS   WF KF+  +KK+G+
Sbjct:    1 MNALTKSGTWEMVHLPEGKRTVGCKWVFTVKLKQDGSLERYKARLVAKGFTQTYGIDYQETFAPVAKLNTVRILLSLAANLDWPLYQMDVKNAFLNGDLQEEVFMDPPPGFEKQFGGKICRLKKSFYGLKQSPRAWFEKFSKSVKKQGY 149          
BLAST of mRNA_A-nodosum_M_contig1226.10.1 vs. uniprot
Match: A0A392M387_9FABA (Integrase catalytic domain-containing protein n=1 Tax=Trifolium medium TaxID=97028 RepID=A0A392M387_9FABA)

HSP 1 Score: 123 bits (308), Expect = 1.040e-29
Identity = 56/145 (38.62%), Postives = 85/145 (58.62%), Query Frame = 1
Query:   16 NNGVWVQVEHPKGKTVLGTKTLFKRDIRKDGQIEKYKCCFVTQGFRQVKGLHYHESSSPTPTASSMRVVLATAAVKNWELRHIDVEQAYLQADIDEQIYIELPEDYRAF-PNAVGLPRKAIYGLVQSGLCWFRKFTDGIKKKGFK 447
            NNG W     P GK  LG K ++K   + DG +E++K C V  G  Q++G+ Y+E+ +P     ++R VLA AA KNWEL  +DV  A+L  D+ E+++++ P  +    P  V   RK++YGL Q+  CWF K +  +K  GF+
Sbjct:  327 NNGTWSVTHLPPGKKTLGCKWVYKIKHKSDGTVERFKACLVILGNHQIEGIDYNETFAPVAKMVTVRTVLAVAATKNWELHQMDVHNAFLHGDLQEEVFMKPPPGFHTTQPGMVCRLRKSLYGLKQAPRCWFAKLSTALKTYGFE 471          
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1226.10.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A392PD17_9FABA6.450e-3240.97Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A2I0I890_PUNGR1.520e-3138.89Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A0C2WN23_AMAMK1.730e-3039.01Integrase catalytic domain-containing protein (Fra... [more]
A0A151QVI1_CAJCA2.270e-3037.93Retrovirus-related Pol polyprotein from transposon... [more]
A0A2Z6LQC0_TRISU2.330e-3042.07Integrase catalytic domain-containing protein n=3 ... [more]
A0A2K3MX29_TRIPR4.310e-3040.00Retrovirus-related Pol polyprotein from transposon... [more]
M4CW55_BRARP5.890e-3040.27Integrase catalytic domain-containing protein n=1 ... [more]
A0A438HIN6_VITVI6.030e-3040.56Retrovirus-related Pol polyprotein from transposon... [more]
A0A2Z7APK6_9LAMI1.030e-2934.23Cysteine-rich RLK (Receptor-like protein kinase) 8... [more]
A0A392M387_9FABA1.040e-2938.62Integrase catalytic domain-containing protein n=1 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig1226contigA-nodosum_M_contig1226:234950..235399 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog3711.Bra008452.1-P
PFAMsRVT_2,Retrotran_gag_3,Retrotrans_gag,gag_pre-integrs,rve
Model size450
Max annot lvl35493|Streptophyta
Hectar predicted targeting categoryother localisation
Exons1
Evalue9.66e-31
EggNOG OGsCOG2801@1|root,KOG0017@2759|Eukaryota,37THH@33090|Viridiplantae,3GHHH@35493|Streptophyta
DescriptionMitochondrial protein
Cds size450
COG categoryL
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866655.37292-CDS-A-nodosum_M_contig1226:234949..2353991680866655.37292-CDS-A-nodosum_M_contig1226:234949..235399Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1226 234950..235399 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig1226.10.1prot_A-nodosum_M_contig1226.10.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig1226 234950..235399 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig1226.10.1

>prot_A-nodosum_M_contig1226.10.1 ID=prot_A-nodosum_M_contig1226.10.1|Name=mRNA_A-nodosum_M_contig1226.10.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=150bp
MNGQINNGVWVQVEHPKGKTVLGTKTLFKRDIRKDGQIEKYKCCFVTQGF
RQVKGLHYHESSSPTPTASSMRVVLATAAVKNWELRHIDVEQAYLQADID
EQIYIELPEDYRAFPNAVGLPRKAIYGLVQSGLCWFRKFTDGIKKKGFK*
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mRNA from alignment at A-nodosum_M_contig1226:234950..235399-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig1226.10.1 ID=mRNA_A-nodosum_M_contig1226.10.1|Name=mRNA_A-nodosum_M_contig1226.10.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=450bp|location=Sequence derived from alignment at A-nodosum_M_contig1226:234950..235399- (Ascophyllum nodosum dioecious)
ATGAACGGACAGATCAATAACGGCGTATGGGTACAGGTGGAGCACCCGAA AGGCAAGACTGTCCTAGGTACTAAGACCCTCTTCAAGCGTGATATCAGAA AGGATGGCCAAATAGAGAAATACAAGTGTTGCTTTGTGACCCAGGGGTTT CGCCAGGTAAAAGGGTTGCACTATCATGAGTCGTCCTCTCCCACTCCTAC GGCCTCCAGTATGAGGGTAGTACTTGCCACTGCAGCCGTGAAGAATTGGG AACTCCGGCACATCGATGTCGAGCAAGCATATCTTCAGGCCGACATCGAT GAACAGATCTACATCGAACTACCCGAAGACTACCGCGCGTTTCCGAACGC GGTCGGCTTGCCAAGGAAGGCCATCTATGGATTGGTGCAATCAGGATTAT GCTGGTTCCGAAAATTCACAGACGGTATCAAAAAGAAGGGCTTCAAATAG
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Coding sequence (CDS) from alignment at A-nodosum_M_contig1226:234950..235399-

>mRNA_A-nodosum_M_contig1226.10.1 ID=mRNA_A-nodosum_M_contig1226.10.1|Name=mRNA_A-nodosum_M_contig1226.10.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=450bp|location=Sequence derived from alignment at A-nodosum_M_contig1226:234950..235399- (Ascophyllum nodosum dioecious)
ATGAACGGACAGATCAATAACGGCGTATGGGTACAGGTGGAGCACCCGAA
AGGCAAGACTGTCCTAGGTACTAAGACCCTCTTCAAGCGTGATATCAGAA
AGGATGGCCAAATAGAGAAATACAAGTGTTGCTTTGTGACCCAGGGGTTT
CGCCAGGTAAAAGGGTTGCACTATCATGAGTCGTCCTCTCCCACTCCTAC
GGCCTCCAGTATGAGGGTAGTACTTGCCACTGCAGCCGTGAAGAATTGGG
AACTCCGGCACATCGATGTCGAGCAAGCATATCTTCAGGCCGACATCGAT
GAACAGATCTACATCGAACTACCCGAAGACTACCGCGCGTTTCCGAACGC
GGTCGGCTTGCCAAGGAAGGCCATCTATGGATTGGTGCAATCAGGATTAT
GCTGGTTCCGAAAATTCACAGACGGTATCAAAAAGAAGGGCTTCAAATAG
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