mRNA_A-nodosum_M_contig1224.13.1 (mRNA) Ascophyllum nodosum dioecious
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Overview
Homology
BLAST of mRNA_A-nodosum_M_contig1224.13.1 vs. uniprot
Match: A0A6H5KUY5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUY5_9PHAE) HSP 1 Score: 237 bits (604), Expect = 1.290e-68 Identity = 146/373 (39.14%), Postives = 192/373 (51.47%), Query Frame = 1
Query: 13 LKGKASIPQRRVLIARMEELLVDLQGSVATMLTGQYVSMTTDGWTSRANESYISFTVVYVNDDWKMVTLALSCSKKQ---------------------------------------------------------------------------------------------------VGII---PLRVIQDVETRWWSTQSMVERLVYLRRAVELHESLDNVAPLLGPVDWNVLELLEPVLAPFMYVQKKLE-SNNVTGSLVVPLICDLRTGLDSERKALQQPYP-GASADVLAARVLLLPCVEALAKDFNNRFGDGSDILTFREGPRRQPQGFRKVQVMATALDPRSKMLYGVLPNEHEGVWQAVAMAATDIA 819
L KA P RR L+ +M E+ +L+ VA ML +YV++TTDGWTSR+NESY+S TV Y++ W++ L+L+C+K +GI+ PL V+QDVETRWWS+ +M+ERL+YL +A++LHES DN+AP+L DW VL L+EP+L PFM QK LE + VTGS+ VP I +LR GL++ L+ G SA A +LP EAL +DF NR+GDGS IL +REG RRQPQGF+ QV ATA+DPR+K LYG+ EH VW+AVA A DIA
Sbjct: 41 LNKKARAPIRRALVEKMREIKKNLESEVALMLDDEYVAITTDGWTSRSNESYMSLTVAYIDVGWQLHHLSLNCTKHTGSTHGEDLAREITSMIERHGLTGRVTACVTDCEPSMVKAGRLLEVGGSNLEHIGCSNHRMESTTSSVFNGKSLGALAKARAVVGRYKRSSQMSGRLAVFIGILKLSPLSVLQDVETRWWSSWAMIERLLYLMKAIKLHESTDNIAPVLSETDWEVLRLIEPILRPFMQAQKDLEGAKYVTGSMTVPKIGELRNGLEAAIADLRATDRFGISASTREAMEAVLPDAEALWEDFLNRWGDGSSILEYREGKRRQPQGFKLQQVCATAVDPRAKHLYGIRQAEHASVWRAVATKAVDIA 413
BLAST of mRNA_A-nodosum_M_contig1224.13.1 vs. uniprot
Match: D8LCS5_ECTSI (Dimer_Tnp_hAT domain-containing protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCS5_ECTSI) HSP 1 Score: 235 bits (600), Expect = 7.640e-68 Identity = 147/379 (38.79%), Postives = 193/379 (50.92%), Query Frame = 1
Query: 1 MVRTLKGKASIPQRRVLIARMEELLVDLQGSVATMLTGQYVSMTTDGWTSRANESYISFTVVYVNDDWKMVTLALSCSK---------------------------------------------------------------------------------------------------KQVGII---PLRVIQDVETRWWSTQSMVERLVYLRRAVELHESLDNVAPLLGPVDWNVLELLEPVLAPFMYVQKKLE-SNNVTGSLVVPLICDLRTGLDS---ERKALQQPYPGASADVLAARVLLLPCVEALAKDFNNRFGDGSDILTFREGPRRQPQGFRKVQVMATALDPRSKMLYGVLPNEHEGVWQAVAMAATDIA 819
MV L +A +P RR L++RM + L+ VA ML ++V++TTDGWTSR NESY+S TV Y++ +WK+ L+L C+K + GI+ PL V+QDVETRWWST +MV RL+YL +A++LHES+D V PLL DW VL L+EP+L PFM QK LE + VTGS+ + + +LR GL++ + KA+ Q G A + P EAL DF NR+GDGS+IL +REG RRQPQGF++ QV ATALDPR+K LYG+ EH GVW+AVA AA DIA
Sbjct: 1 MVSALNKRAKVPSRRELLSRMRAVKTALESEVALMLDAEFVAITTDGWTSRNNESYMSLTVAYIDYEWKLHHLSLDCAKHTGTTTGEDLAALVAGMVERHDLTGRVIACVTDCEPSMIKAGRLLEVDGSTISHIGCSNHRMESTTSSVFNGRSLGALGLARTLVGRYKKSSQMAARLVQLCGILQMEPLSVMQDVETRWWSTWAMVVRLLYLMKAIKLHESMDEVHPLLSDTDWEVLRLIEPILRPFMKAQKDLEGAQYVTGSMTIGKMAELREGLEAAITDLKAVAQQ--GLKETTQKAMEAVRPDAEALMADFTNRWGDGSNILEYREGKRRQPQGFKRKQVYATALDPRAKHLYGIQQREHAGVWRAVASAAVDIA 377
BLAST of mRNA_A-nodosum_M_contig1224.13.1 vs. uniprot
Match: A0A6H5JHP9_9PHAE (Autophagy protein 5 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHP9_9PHAE) HSP 1 Score: 174 bits (442), Expect = 8.380e-44 Identity = 93/186 (50.00%), Postives = 119/186 (63.98%), Query Frame = 1
Query: 265 VIQDVETRWWSTQSMVERLVYLRRAVELHESLDNVAPLLGPVDWNVLELLEPVLAPFMYVQKKLE-SNNVTGSLVVPLICDLRTGLDSERKALQQPYPGASADVLAARVLLLPCVEALAKDFNNRFGDGSDILTFREGPRRQPQGFRKVQVMATALDPRSKMLYGVLPNEHEGVWQAVAMAATDIA 819
V+QDVETRWWST + RL+ LRR + HE +D+ PLL DW VL+L+E +L PFM QK LE S VT LV P I DL+ GLD + LQ A + V A+ ++ C +AL D + R+GD +D+L + EGPRRQP+GF+K QV+ATAL PRSK LYG+ EH VW A A A +A
Sbjct: 156 VVQDVETRWWSTYVSICRLISLRRPITEHEIIDSTPPLLKEKDWEVLQLVESLLKPFMTAQKHLEASKEVTVRLVSPYIADLQDGLDEAVERLQAHSCPAESIVAEAKKDVILCAQALQTDLSRRWGDRTDVLVYTEGPRRQPRGFKKEQVLATALGPRSKSLYGIEETEHSDVWDAGANEAVKVA 341
BLAST of mRNA_A-nodosum_M_contig1224.13.1 vs. uniprot
Match: A0A6H5KVI1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVI1_9PHAE) HSP 1 Score: 167 bits (423), Expect = 8.630e-44 Identity = 110/263 (41.83%), Postives = 144/263 (54.75%), Query Frame = 1
Query: 262 RVIQDVETRWWSTQSMVERLVYLRRAVELHESLDNVAPLLGPVDWNVLELLEPVLAPFMYVQKKLE-SNNVTGSLVVPLICDLRTGLDSERKALQQPYPGASADVLAARVLLLPCVEALAKDFNNRFGDGSDILTFREGPRRQPQGFRKVQVMATALDPRSKMLYGVLPNEHEGVWQAVAMAATDIAKSTQASVRTTALSAAGST-PAGPGPGASARPASKRFCGGFMAASQAQAASASTVTAAPSLPAEHFLNEAGGGHKVS 1044
+V+QDVETRWWST +D++ PLL DW VL+L+EP+L PFM QK LE S VT SLV I DLR LD + LQ A + V A+ +L C AL D + R+ DG+D+L + EGPRRQP+GF+K QV+ATALDPRSK LYG+ EH VW+AVA A +A +A+ T + A+ S P P A+ +P +R GF AS A AS+ A L + + G +S
Sbjct: 143 KVVQDVETRWWSTP----------------REIDSIPPLLNEKDWEVLQLVEPLLHPFMTAQKHLEASKGVTVSLVTAYIADLRDELDEAIERLQAYSCPAESIVAEAKKDILRCAPALQTDLSRRWRDGTDVLVYTEGPRRQPRGFKKKQVLATALDPRSKSLYGIEETEHSDVWEAVANEAVKVAIEAKATEDTQSAGASSSPIPVEPAAAAAYQPRRRR---GFATASAAHGASSKVPMRALRLQGSRWRASSAGNWTLS 386
BLAST of mRNA_A-nodosum_M_contig1224.13.1 vs. uniprot
Match: A0A6H5JJV8_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJV8_9PHAE) HSP 1 Score: 155 bits (392), Expect = 1.540e-38 Identity = 112/378 (29.63%), Postives = 168/378 (44.44%), Query Frame = 1
Query: 1 MVRTLKGKASIPQRRVLIARMEELLVDLQGSVATMLTGQYVSMTTDGWTSRANESYISFTVVYVNDDWKMVTLALSCSK----------------------------------------------KQVGIIPL--------------------------------------------------------RVIQDVETRWWSTQSMVERLVYLRRAVELHESLDNVAPLLGPVDWNVLELLEPVLAPFMYVQKKLE-SNNVTGSLVVPLICDLRTGLDSERKALQQPYPGASADVLAARVLLLPCVEALAKD--FNNRFGDGSDILTFREGPRRQPQGFRKVQVMATALDPRSKMLYGVLPNEHEGVWQAVAMAATDIA 819
MVR LK +A++P +R+ + ++ + L V LTG++V++T+DGWTS +N++Y+ FT Y++ ++ +V L + C K + G+ L +V+QDVETRWWST + + RL+ LRR + HE +D++ PLL DW VL+++EP+ PF+ QK E S +VT SLV+P I DLR LD + LQ A + V A+ KD F + + ++ +P+GF+K QV+ATALDPRSK LYG+ EH VW+AVA A +A
Sbjct: 10 MVRFLKSRATVPHKRLFLEKLRGMKKGLDQEVLGRLTGEHVAVTSDGWTSASNDTYMYFTCTYISSNFDLVALCVECKKHGGRTTGEDLVEAVKAMIARNGLTSRTVATTTDCEPSMVKAGRLLEENEGVTHLGCFCHRLESITSQAFGGPGVSKALALARRVVTRYNMSSQASDRLEQMRDIVQVERKKVVQDVETRWWSTYASICRLLSLRRPITEHERIDSIPPLLKEKDWEVLQVVEPLSKPFILSQKHREASKDVTVSLVIPYIADLRDELDEAVERLQAHACPAESIVAEAK-----------KDVFFAPKHVRPTSVIV-------EPRGFKKKQVLATALDPRSKSLYGIEETEHSDVWEAVANEAVKVA 369
BLAST of mRNA_A-nodosum_M_contig1224.13.1 vs. uniprot
Match: A0A6H5L7Y8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7Y8_9PHAE) HSP 1 Score: 146 bits (369), Expect = 2.660e-34 Identity = 102/322 (31.68%), Postives = 159/322 (49.38%), Query Frame = 1
Query: 1 MVRTLKGKASIPQRRVLIARMEELLVDLQGSVATMLTGQYVSMTTDGWTSRANESYISFTVVYVNDDWKMVTLALSCSKKQ---------VGIIPL-----------RVIQDVET------------------------RWWSTQSMVERLVYLRRAVELHESLDNVAPLLGPVDWNVLELLEPVLAPFMYVQ-KKLESNNVTGSLVVPLICDLRTGLDSERKALQQPYPGASADVLAARVLLLPCVEALAKDFNNRFGDGSDILTFREGPRRQPQGFRKVQVMATALDPRSKMLYGVLPNEHEGVWQAVAMAATDIAKSTQ 831
MV ++ A +P+++ + M + + V+ ++ G+ V +T+DGWTS AN++Y+S T + WK+VTL++ CSK + GI V D E R ST S+V +++ + L L P + L+ + ++ V K++ + VTGSLVVP I DLR L+ L + P + A+V A ++PC++AL D+ +R+GDG +IL ++EGPRRQP GF+ V V+ATALDPR+K+ YGV +E VW+ V A IA T+
Sbjct: 1 MVHAIRPSARVPEKKDCVTTMRTVKKCMMEKVSRLIEGEQVCITSDGWTSCANDTYMSLTFTLITSAWKLVTLSVDCSKSEGTTTGDALAAGIKATVAKHGLTGKVTAVTTDCEPSMVKMGRLLAGDATVSTQIGCCNYRLESTSSIVFNGPRVKKVMVLARGLVTRYP----TSSQAADRLKQFVKTYLGVDNKRVIQDVVTGSLVVPFIYDLRNSLEDAIDDLVELPPDSDANVNTAWAAVMPCIKALRDDYIDRWGDGHNILIYKEGPRRQPGGFKPVHVLATALDPRTKIPYGVDEDEKADVWKLVQEEAVKIAVETR 318
BLAST of mRNA_A-nodosum_M_contig1224.13.1 vs. uniprot
Match: A0A6H5JWI1_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWI1_9PHAE) HSP 1 Score: 117 bits (293), Expect = 4.230e-26 Identity = 54/100 (54.00%), Postives = 73/100 (73.00%), Query Frame = 2
Query: 1028 EVTRYRATSGLAMEEAQESGKILYPDPLDWWRINAVKFPLLAALARRLLTIPASQAQSERVFSSAGQIVTQTRNRLSSENVELLVALKNIWSVVEEWQQS 1327
E+T ++ ++G+ M E + G +Y DPLDWWR+ FP LA LARR+L IPA+QA+SER+FS AG IVT+ RN L+ VELLV L++ W +VEEW+QS
Sbjct: 197 ELTAFKVSTGIKMYEEDKEGAKVYLDPLDWWRVRCADFPHLANLARRVLAIPATQAESERLFSCAGNIVTKNRNNLAPTTVELLVLLRHSWKIVEEWEQS 296
BLAST of mRNA_A-nodosum_M_contig1224.13.1 vs. uniprot
Match: A0A6H5JVE5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVE5_9PHAE) HSP 1 Score: 99.0 bits (245), Expect = 1.820e-19 Identity = 45/81 (55.56%), Postives = 62/81 (76.54%), Query Frame = 1
Query: 553 PGASADVLAARVLLLPCVEALAKDFNNRFGDGSDILTFREGPRRQPQGFRKVQVMATALDPRSKMLYGVLPNEHEGVWQAV 795
P + A+V AR ++PC++AL DF NR+GDG +IL ++EGPRRQP GF+ VQV+ATALDPR+K+L+GV +E VW+ V
Sbjct: 149 PDSDANVNTARAAVMPCIKALRDDFINRWGDGRNILNYKEGPRRQPAGFKPVQVLATALDPRTKILHGVDEDEKADVWKLV 229
BLAST of mRNA_A-nodosum_M_contig1224.13.1 vs. uniprot
Match: A0A151I7P1_9HYME (Zinc finger BED domain-containing protein 1 (Fragment) n=1 Tax=Cyphomyrmex costatus TaxID=456900 RepID=A0A151I7P1_9HYME) HSP 1 Score: 77.0 bits (188), Expect = 6.220e-14 Identity = 36/62 (58.06%), Postives = 46/62 (74.19%), Query Frame = 2
Query: 1103 DPLDWWRINAVKFPLLAALARRLLTIPASQAQSERVFSSAGQIVTQTRNRLSSENVELLVAL 1288
D +DWW+ N +FP+LAA+AR+ L IPA+Q SER+FS AG IVT TR++L ENVE L L
Sbjct: 16 DIIDWWKCNVTRFPILAAVARQYLAIPATQVSSERLFSDAGNIVTATRSKLIPENVEKLCFL 77
BLAST of mRNA_A-nodosum_M_contig1224.13.1 vs. uniprot
Match: UPI000EAB1B8F (zinc finger BED domain-containing protein 1-like n=1 Tax=Ceratina calcarata TaxID=156304 RepID=UPI000EAB1B8F) HSP 1 Score: 78.6 bits (192), Expect = 1.620e-13 Identity = 36/57 (63.16%), Postives = 46/57 (80.70%), Query Frame = 2
Query: 1109 LDWWRINAVKFPLLAALARRLLTIPASQAQSERVFSSAGQIVTQTRNRLSSENVELL 1279
+ WW+ N V+FPLLAA+AR LL IPA+Q SER+FS+AG IV + R+RL SENVE+L
Sbjct: 104 ISWWKANIVRFPLLAAVARNLLAIPATQVTSERLFSTAGNIVNEKRSRLCSENVEML 160 The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1224.13.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_A-nodosum_M_contig1224.13.1 >prot_A-nodosum_M_contig1224.13.1 ID=prot_A-nodosum_M_contig1224.13.1|Name=mRNA_A-nodosum_M_contig1224.13.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=110bp MKQEEVTRYRATSGLAMEEAQESGKILYPDPLDWWRINAVKFPLLAALARback to top mRNA from alignment at A-nodosum_M_contig1224:153628..155277+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_A-nodosum_M_contig1224.13.1 ID=mRNA_A-nodosum_M_contig1224.13.1|Name=mRNA_A-nodosum_M_contig1224.13.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=1650bp|location=Sequence derived from alignment at A-nodosum_M_contig1224:153628..155277+ (Ascophyllum nodosum dioecious)back to top Coding sequence (CDS) from alignment at A-nodosum_M_contig1224:153628..155277+ >mRNA_A-nodosum_M_contig1224.13.1 ID=mRNA_A-nodosum_M_contig1224.13.1|Name=mRNA_A-nodosum_M_contig1224.13.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=330bp|location=Sequence derived from alignment at A-nodosum_M_contig1224:153628..155277+ (Ascophyllum nodosum dioecious)back to top |