mRNA_A-nodosum_M_contig12236.1.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig12236.1.1
Unique NamemRNA_A-nodosum_M_contig12236.1.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig12236.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig12236contigA-nodosum_M_contig12236:4495..6665 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size160
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Cds size147
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866654.9636383-UTR-A-nodosum_M_contig12236:4494..45051680866654.9636383-UTR-A-nodosum_M_contig12236:4494..4505Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig12236 4495..4505 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866654.9742858-CDS-A-nodosum_M_contig12236:4505..45321680866654.9742858-CDS-A-nodosum_M_contig12236:4505..4532Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig12236 4506..4532 +
1680866654.9827902-CDS-A-nodosum_M_contig12236:6545..66651680866654.9827902-CDS-A-nodosum_M_contig12236:6545..6665Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig12236 6546..6665 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig12236.1.1prot_A-nodosum_M_contig12236.1.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig12236 4506..6665 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig12236.1.1

>prot_A-nodosum_M_contig12236.1.1 ID=prot_A-nodosum_M_contig12236.1.1|Name=mRNA_A-nodosum_M_contig12236.1.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=49bp
MESDVTPQEMETLLTQRGFKGQSLLATAAVSGDKASFEAVLEAVRTRLT
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mRNA from alignment at A-nodosum_M_contig12236:4495..6665+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig12236.1.1 ID=mRNA_A-nodosum_M_contig12236.1.1|Name=mRNA_A-nodosum_M_contig12236.1.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=2171bp|location=Sequence derived from alignment at A-nodosum_M_contig12236:4495..6665+ (Ascophyllum nodosum dioecious)
TAATATCCGGTATGGAGAGCGATGTCACACCCCAAGAGGTACGGAACAAC
GACGATTCGGATTTGATTCGTCACATGATCGAGAGTCGGATGCACCCTTG
ACCAGCTCTCGATGCCGAAGTTAACGTGACCTTCTTGATCAACGATCGAT
ACCAACCCCAACTTATTTTGCTATAATACTTCGTAGTAGGCATGAAATCA
TGGTCGGAAACCTTCTACTCACCGTAGTTCCATCCAACACACTCCACGCC
CCGCTAGGCCGATACCACGTCAGCATGTTTCGAACACGTCCGTGACATGG
TACCCTCGTGGCCGTACACTCCGTGACGTTGGTGAACTCGACACATGGGA
ACGCAGTTGGAGACATTGCTGACTCAACGGGGTTTCGAAGGAAAGTCCTT
GCTGGCAACGGCGGCTGAAGACGGAGAACAAGGCTTCTTTCGAGGCTGTT
CTTGAGGCCGTTAGAACGAGGTTAACGCCCGATCAGGTGCTGCGTCGTTT
TGAAATGTGGCTGGAAATGACCGATCAAGCGTACATGTTCGCCAGCAAAT
TCTGTTTGTGTTCCTGACGTTAGGCAACGCACTCAATTTGTAAGAGAATA
TATTTTTACCTCGCAGAAAAAATACCTTTTGTATGGCCAAAATAAAACCC
GCTATTACTTAACAATTTAGGGGGAAAATTGCTCATTTAGTCATCGATCG
GAAGTTGTTCGTGAGGCACTGTGACCATCCAAATCATTTTTAGGTGCGAG
ACAGTTCGGCGTTTGAAAAGTCAACGAATCCAGACCAAGCTAAATTTCTG
GGAGCGTAGGGAAATTTCTACTTATTAGCACGGCTGGCTGATTCCACCGG
GTTCCTCGATATGTATAATCATATTTCGTGTGGCTAGACTCGGTTTCTAA
GCTTTTTAAGAAAGATCAGAAGGTGAAATTCTGGCGGGAGTCTATGTTAA
AATATTAGCTAGAAAAAAACAAGACCAGCGTGGGTGTAAAAATACTTTAG
CTGGTCGCTGAGATTTTTTTTTTTTTTTTGATGTGTGATATGAAGCTTTT
GTTGGGCTGCAGGCCCAAACGCTTATTTCTTCGGGGGAGATTCCGGTTTT
CCAAACTCAATTCCCGCCGACGATCTGGATTCCCTAGCCCACAAGCGTTA
GACATGCATCATTTAATAGCCTCGGAAAAAGCGCAACAAAAAGCTAGCGA
ATCGCGCCTAGTGAGGCGACACGGAGTCCAATTGCAAACGTTTTCACGAG
GACTCGCCTGCTGGAACTCGGGTGGCGATCGGATTTTGTCTCGAATGCGG
ACCGTAGTACGTACAAATAACGTGCCCCCCCTCATTCCCTGGGTTTCAGC
TCGAAAATCATAATTCCACGGCGATGATTGTGAATAACAGGAAGCACAGC
TGGATTTGTCTTTGAAGCTACTCCTCTACCTACAGCGTGCCAGACGCATC
ATCCTGTATTTTTGTCCAGCTAGCCTAGACCATAGAGGCAAACGAAGCAC
GACGACAACAGTCTTTGGTGCTGAGTTAGAACAGTGGACCGCGTGTGTTC
TAAGAGGCTGACTGTCGCTGCTCCACTTGTTTGCATGATATTATCGCCAC
GGCAGGTCAAGACCATGCAGATGTCTTGCGATGATGATAAAACTCTGTCC
TCATCATGGCGGCGATAAACAAGAGCCCGGATGTGTTCGGAGCGGTAATG
TCCGCTATGGAGAACGATGTCACACCCCAAGAGGTACGGAACAGCGACGA
TTCGGATTCGATCCGTCACATGTTCGAGGATCGGATGCACCCTTGACTAG
CTCTCGATGTCGAAAATAACGTTACCTTCTTGATAAACAATTGATGCCAA
GCCTAACTTATTTTGCTATGATACTTCGTAGTAGGCATGCAATCATGGTA
GAAATCACCTACTCGCCGTAATCCCATCCACCACACTCCATGCCCCGCTA
AGCCGATACCACGCCAGCATGTTTCGAACACGTCCGTGACACGGTACCCT
CGTGACCGTACACTCCCGTGATACCGGTCAACTCGACACATGGGAACGCA
GATGGAGACACTGCTGACTCAACGGGGTTTCAAGGGACAGTCCTTGCTGG
CTACGGCGGCTGTAAGCGGGGATAAGGCTTCTTTCGAGGCTGTTCTTGAG
GCCGTTAGAACGAGGTTAACG
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Coding sequence (CDS) from alignment at A-nodosum_M_contig12236:4495..6665+

>mRNA_A-nodosum_M_contig12236.1.1 ID=mRNA_A-nodosum_M_contig12236.1.1|Name=mRNA_A-nodosum_M_contig12236.1.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=147bp|location=Sequence derived from alignment at A-nodosum_M_contig12236:4495..6665+ (Ascophyllum nodosum dioecious)
ATGGAGAGCGATGTCACACCCCAAGAGATGGAGACACTGCTGACTCAACG
GGGTTTCAAGGGACAGTCCTTGCTGGCTACGGCGGCTGTAAGCGGGGATA
AGGCTTCTTTCGAGGCTGTTCTTGAGGCCGTTAGAACGAGGTTAACG
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