mRNA_A-nodosum_M_contig12225.1.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig12225.1.1
Unique NamemRNA_A-nodosum_M_contig12225.1.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
[Close]
BLAST of mRNA_A-nodosum_M_contig12225.1.1 vs. uniprot
Match: A0A6H5KVC3_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVC3_9PHAE)

HSP 1 Score: 84.3 bits (207), Expect = 7.600e-18
Identity = 39/56 (69.64%), Postives = 48/56 (85.71%), Query Frame = 1 
Query:  187 YVCVTQFRYLGDLVNEEDGELTQEINHRSRAAWACIRRFSRELFDRPRAPWRLKVR 354
            Y   T+FRYLG LVNE  G+LT+EIN+RSR AWAC+RR+ RELFDRP+AP+RLK+R
Sbjct:  144 YAQTTEFRYLGGLVNEH-GDLTREINYRSRGAWACLRRYGRELFDRPQAPFRLKIR 198
[Close]
BLAST of mRNA_A-nodosum_M_contig12225.1.1 vs. uniprot
Match: A0A6H5K038_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K038_9PHAE)

HSP 1 Score: 84.3 bits (207), Expect = 7.760e-18
Identity = 39/56 (69.64%), Postives = 48/56 (85.71%), Query Frame = 1 
Query:  187 YVCVTQFRYLGDLVNEEDGELTQEINHRSRAAWACIRRFSRELFDRPRAPWRLKVR 354
            Y   T+FRYLG LVNE  G+LT+EIN+RSR AWAC+RR+ RELFDRP+AP+RLK+R
Sbjct:   72 YAQTTEFRYLGGLVNEH-GDLTREINYRSRGAWACLRRYGRELFDRPQAPFRLKIR 126
[Close]
BLAST of mRNA_A-nodosum_M_contig12225.1.1 vs. uniprot
Match: A0A6H5JYZ4_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYZ4_9PHAE)

HSP 1 Score: 83.2 bits (204), Expect = 9.630e-18
Identity = 39/56 (69.64%), Postives = 48/56 (85.71%), Query Frame = 1 
Query:  187 YVCVTQFRYLGDLVNEEDGELTQEINHRSRAAWACIRRFSRELFDRPRAPWRLKVR 354
            Y   T+FRYLG LVNE+ G+LT+EINHRS+AAWACI+R++ ELFDRP AP+RLK R
Sbjct:   70 YAQTTEFRYLGGLVNEQ-GDLTREINHRSKAAWACIKRYATELFDRPGAPFRLKAR 124
[Close]
BLAST of mRNA_A-nodosum_M_contig12225.1.1 vs. uniprot
Match: A0A6H5KXX8_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXX8_9PHAE)

HSP 1 Score: 83.2 bits (204), Expect = 1.060e-17
Identity = 39/56 (69.64%), Postives = 48/56 (85.71%), Query Frame = 1 
Query:  187 YVCVTQFRYLGDLVNEEDGELTQEINHRSRAAWACIRRFSRELFDRPRAPWRLKVR 354
            Y   T+FRYLG LVNE+ G+LT+EINHRS+AAWACI+R++ ELFDRP AP+RLK R
Sbjct:   80 YAQTTEFRYLGGLVNEQ-GDLTREINHRSKAAWACIKRYATELFDRPGAPFRLKAR 134
[Close]
BLAST of mRNA_A-nodosum_M_contig12225.1.1 vs. uniprot
Match: A0A6H5K6C6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6C6_9PHAE)

HSP 1 Score: 84.3 bits (207), Expect = 1.130e-17
Identity = 39/56 (69.64%), Postives = 48/56 (85.71%), Query Frame = 1 
Query:  187 YVCVTQFRYLGDLVNEEDGELTQEINHRSRAAWACIRRFSRELFDRPRAPWRLKVR 354
            Y   T+FRYLG LVNE  G+LT+EIN+RSR AWAC+RR+ RELFDRP+AP+RLK+R
Sbjct:  144 YAQTTEFRYLGGLVNEH-GDLTREINYRSRGAWACLRRYGRELFDRPQAPFRLKIR 198
[Close]
BLAST of mRNA_A-nodosum_M_contig12225.1.1 vs. uniprot
Match: A0A6H5KQ16_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQ16_9PHAE)

HSP 1 Score: 84.3 bits (207), Expect = 1.830e-17
Identity = 39/56 (69.64%), Postives = 48/56 (85.71%), Query Frame = 1 
Query:  187 YVCVTQFRYLGDLVNEEDGELTQEINHRSRAAWACIRRFSRELFDRPRAPWRLKVR 354
            Y   T+FRYLG LVNE  G+LT+EIN+RSR AWAC+RR+ RELFDRP+AP+RLK+R
Sbjct:   72 YAQTTEFRYLGGLVNEH-GDLTREINYRSRGAWACLRRYGRELFDRPQAPFRLKIR 126
[Close]
BLAST of mRNA_A-nodosum_M_contig12225.1.1 vs. uniprot
Match: A0A6H5JAH7_9PHAE (Reverse transcriptase domain-containing protein n=5 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAH7_9PHAE)

HSP 1 Score: 84.3 bits (207), Expect = 2.090e-17
Identity = 39/56 (69.64%), Postives = 48/56 (85.71%), Query Frame = 1 
Query:  187 YVCVTQFRYLGDLVNEEDGELTQEINHRSRAAWACIRRFSRELFDRPRAPWRLKVR 354
            Y   T+FRYLG LVNE  G+LT+EIN+RSR AWAC+RR+ RELFDRP+AP+RLK+R
Sbjct:   72 YAQTTEFRYLGGLVNEH-GDLTREINYRSRGAWACLRRYGRELFDRPQAPFRLKIR 126
[Close]
BLAST of mRNA_A-nodosum_M_contig12225.1.1 vs. uniprot
Match: A0A6H5KPJ4_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPJ4_9PHAE)

HSP 1 Score: 83.2 bits (204), Expect = 2.440e-17
Identity = 39/56 (69.64%), Postives = 48/56 (85.71%), Query Frame = 1 
Query:  187 YVCVTQFRYLGDLVNEEDGELTQEINHRSRAAWACIRRFSRELFDRPRAPWRLKVR 354
            Y   T+FRYLG LVNE+ G+LT+EINHRS+AAWACI+R++ ELFDRP AP+RLK R
Sbjct:   70 YAQTTEFRYLGGLVNEQ-GDLTREINHRSKAAWACIKRYATELFDRPGAPFRLKAR 124
[Close]
BLAST of mRNA_A-nodosum_M_contig12225.1.1 vs. uniprot
Match: A0A6H5KLX9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLX9_9PHAE)

HSP 1 Score: 84.0 bits (206), Expect = 6.350e-17
Identity = 39/56 (69.64%), Postives = 48/56 (85.71%), Query Frame = 1 
Query:  187 YVCVTQFRYLGDLVNEEDGELTQEINHRSRAAWACIRRFSRELFDRPRAPWRLKVR 354
            Y   T+FRYLG L+NE+ G+LT+EINHRS+AAWACIRR++ ELFDRP AP+RLK R
Sbjct:  102 YAQTTEFRYLGGLINEQ-GDLTREINHRSKAAWACIRRYATELFDRPGAPFRLKAR 156
[Close]
BLAST of mRNA_A-nodosum_M_contig12225.1.1 vs. uniprot
Match: A0A6H5JLH5_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLH5_9PHAE)

HSP 1 Score: 83.2 bits (204), Expect = 6.660e-17
Identity = 39/56 (69.64%), Postives = 48/56 (85.71%), Query Frame = 1 
Query:  187 YVCVTQFRYLGDLVNEEDGELTQEINHRSRAAWACIRRFSRELFDRPRAPWRLKVR 354
            Y   T+FRYLG LVNE+ G+LT+EINHRS+AAWACI+R++ ELFDRP AP+RLK R
Sbjct:   51 YAQTTEFRYLGGLVNEQ-GDLTREINHRSKAAWACIKRYATELFDRPGAPFRLKAR 105
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig12225.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KVC3_9PHAE7.600e-1869.64Reverse transcriptase domain-containing protein (F... [more]
A0A6H5K038_9PHAE7.760e-1869.64Reverse transcriptase domain-containing protein (F... [more]
A0A6H5JYZ4_9PHAE9.630e-1869.64Reverse transcriptase domain-containing protein (F... [more]
A0A6H5KXX8_9PHAE1.060e-1769.64Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5K6C6_9PHAE1.130e-1769.64Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KQ16_9PHAE1.830e-1769.64Reverse transcriptase domain-containing protein (F... [more]
A0A6H5JAH7_9PHAE2.090e-1769.64Reverse transcriptase domain-containing protein n=... [more]
A0A6H5KPJ4_9PHAE2.440e-1769.64Reverse transcriptase domain-containing protein (F... [more]
A0A6H5KLX9_9PHAE6.350e-1769.64Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JLH5_9PHAE6.660e-1769.64Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig12225contigA-nodosum_M_contig12225:4918..5272 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size357
Hectar predicted targeting categoryother localisation
Exons1
Cds size354
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866653.934883-CDS-A-nodosum_M_contig12225:4918..52721680866653.934883-CDS-A-nodosum_M_contig12225:4918..5272Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig12225 4919..5272 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig12225.1.1prot_A-nodosum_M_contig12225.1.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig12225 4919..5272 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig12225.1.1

>prot_A-nodosum_M_contig12225.1.1 ID=prot_A-nodosum_M_contig12225.1.1|Name=mRNA_A-nodosum_M_contig12225.1.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=118bp
VSKYQIQPEYGDEQADAGRDCRARLARPILRGQGMLIFFPIQLTTSRIGN
LTRLIHTLSLCMYVCVTQFRYLGDLVNEEDGELTQEINHRSRAAWACIRR
FSRELFDRPRAPWRLKVR
back to top

mRNA from alignment at A-nodosum_M_contig12225:4918..5272-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig12225.1.1 ID=mRNA_A-nodosum_M_contig12225.1.1|Name=mRNA_A-nodosum_M_contig12225.1.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=355bp|location=Sequence derived from alignment at A-nodosum_M_contig12225:4918..5272- (Ascophyllum nodosum dioecious)
GTAAGTAAGTATCAGATTCAGCCTGAGTATGGAGATGAGCAGGCTGACGC
GGGACGGGACTGCCGAGCCCGTCTCGCGAGACCAATTCTACGCGGACAGG
GAATGCTCATTTTCTTCCCTATTCAGCTGACCACGAGCAGGATTGGCAAC
CTTACCCGGTTGATCCACACGCTTTCTCTATGTATGTATGTATGTGTAAC
CCAGTTCCGATACTTGGGCGACCTTGTCAACGAAGAAGATGGCGAACTCA
CGCAGGAGATCAACCACCGGAGCAGAGCAGCGTGGGCATGCATCAGGAGG
TTCTCCCGGGAGCTCTTCGACCGGCCGAGAGCACCGTGGAGACTTAAGGT
TCGAC
back to top

Coding sequence (CDS) from alignment at A-nodosum_M_contig12225:4918..5272-

>mRNA_A-nodosum_M_contig12225.1.1 ID=mRNA_A-nodosum_M_contig12225.1.1|Name=mRNA_A-nodosum_M_contig12225.1.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=354bp|location=Sequence derived from alignment at A-nodosum_M_contig12225:4918..5272- (Ascophyllum nodosum dioecious)
GTAAGTAAGTATCAGATTCAGCCTGAGTATGGAGATGAGCAGGCTGACGC
GGGACGGGACTGCCGAGCCCGTCTCGCGAGACCAATTCTACGCGGACAGG
GAATGCTCATTTTCTTCCCTATTCAGCTGACCACGAGCAGGATTGGCAAC
CTTACCCGGTTGATCCACACGCTTTCTCTATGTATGTATGTATGTGTAAC
CCAGTTCCGATACTTGGGCGACCTTGTCAACGAAGAAGATGGCGAACTCA
CGCAGGAGATCAACCACCGGAGCAGAGCAGCGTGGGCATGCATCAGGAGG
TTCTCCCGGGAGCTCTTCGACCGGCCGAGAGCACCGTGGAGACTTAAGGT
TCGA
back to top