mRNA_A-nodosum_M_contig12221.1.1 (mRNA) Ascophyllum nodosum dioecious
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Overview
Homology
BLAST of mRNA_A-nodosum_M_contig12221.1.1 vs. uniprot
Match: A0A6H5K2T3_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2T3_9PHAE) HSP 1 Score: 76.6 bits (187), Expect = 9.060e-15 Identity = 37/69 (53.62%), Postives = 47/69 (68.12%), Query Frame = 1
Query: 1 LKKKSNAAAALRNIIAEYITPA-GLKIGSIRTDEGGEFEGEFQQVLDSHGITHEFTPPHTPQYNGVAAR 204
LK KS+AA +A+Y T K+ +RTD GGEF+G+F +V +HGI EFTPPHTP+YNGVA R
Sbjct: 59 LKHKSDAAVGFEKFLADYRTKGVPCKVYIVRTDGGGEFQGQFAEVCRTHGIKQEFTPPHTPKYNGVAER 127
BLAST of mRNA_A-nodosum_M_contig12221.1.1 vs. uniprot
Match: A0A6H5JM30_9PHAE (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JM30_9PHAE) HSP 1 Score: 74.3 bits (181), Expect = 6.230e-14 Identity = 37/69 (53.62%), Postives = 46/69 (66.67%), Query Frame = 1
Query: 1 LKKKSNAAAALRNIIAEYITPA-GLKIGSIRTDEGGEFEGEFQQVLDSHGITHEFTPPHTPQYNGVAAR 204
LK KS+AA L +A+Y T ++ RTD GGEF+G+F +V HGI EFTPPHTP+YNGVA R
Sbjct: 683 LKHKSDAAVGLEKFLADYRTKGVPCEVYIARTDGGGEFQGQFAEVCRRHGIKQEFTPPHTPKYNGVAER 751
BLAST of mRNA_A-nodosum_M_contig12221.1.1 vs. uniprot
Match: A0A6H5KAM7_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAM7_9PHAE) HSP 1 Score: 71.6 bits (174), Expect = 5.470e-13 Identity = 35/69 (50.72%), Postives = 45/69 (65.22%), Query Frame = 1
Query: 1 LKKKSNAAAALRNIIAEYITPA-GLKIGSIRTDEGGEFEGEFQQVLDSHGITHEFTPPHTPQYNGVAAR 204
LK KS+AA +A+Y T ++ RTD GGEF+G+F ++ HGI EFTPPHTP+YNGVA R
Sbjct: 59 LKHKSDAAVGFEKFLADYRTKGVPCEVCIARTDGGGEFQGQFAELCRRHGIKEEFTPPHTPKYNGVAER 127
BLAST of mRNA_A-nodosum_M_contig12221.1.1 vs. uniprot
Match: A0A6H5KGJ8_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGJ8_9PHAE) HSP 1 Score: 70.5 bits (171), Expect = 1.180e-12 Identity = 34/69 (49.28%), Postives = 44/69 (63.77%), Query Frame = 1
Query: 1 LKKKSNAAAALRNIIAEYITP-AGLKIGSIRTDEGGEFEGEFQQVLDSHGITHEFTPPHTPQYNGVAAR 204
LK KS+AA + +Y T ++ RTD+GGEF+G+F +V HGI EFTPPHTP+YN VA R
Sbjct: 253 LKHKSDAAVGFEKFLVDYRTKEVPCEVYITRTDDGGEFQGQFAEVFRRHGIKQEFTPPHTPKYNDVAER 321
BLAST of mRNA_A-nodosum_M_contig12221.1.1 vs. uniprot
Match: A0A6H5JIN8_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIN8_9PHAE) HSP 1 Score: 68.6 bits (166), Expect = 6.630e-12 Identity = 34/65 (52.31%), Postives = 42/65 (64.62%), Query Frame = 1
Query: 13 SNAAAALRNIIAEYITPA-GLKIGSIRTDEGGEFEGEFQQVLDSHGITHEFTPPHTPQYNGVAAR 204
S+AA +A+Y T K+ RTD GGEF+G+F +V HGI EFTPPHTP+YNGVA R
Sbjct: 440 SDAAVGFEKSLADYRTKGVPCKVYIARTDGGGEFQGQFAEVCRRHGIKQEFTPPHTPKYNGVAER 504
BLAST of mRNA_A-nodosum_M_contig12221.1.1 vs. uniprot
Match: A0A6H5JAQ2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAQ2_9PHAE) HSP 1 Score: 68.6 bits (166), Expect = 6.740e-12 Identity = 36/70 (51.43%), Postives = 44/70 (62.86%), Query Frame = 1
Query: 1 LKKKSNAAAALRNIIAEYITPAGLKIGSI--RTDEGGEFEGEFQQVLDSHGITHEFTPPHTPQYNGVAAR 204
LK KS+AA +A+Y T G+ R D GGEF+G+F +V HGI EFTPPHTP+YNGVA R
Sbjct: 738 LKHKSDAAVGFEKFLADYRTN-GVPCEDFIARADGGGEFQGQFAEVCRRHGIKQEFTPPHTPKYNGVAER 806
BLAST of mRNA_A-nodosum_M_contig12221.1.1 vs. uniprot
Match: Q9ZRJ0_TOBAC (Retrotransposon Tto1 DNA n=2 Tax=Nicotiana tabacum TaxID=4097 RepID=Q9ZRJ0_TOBAC) HSP 1 Score: 63.2 bits (152), Expect = 5.340e-10 Identity = 29/68 (42.65%), Postives = 37/68 (54.41%), Query Frame = 1
Query: 1 LKKKSNAAAALRNIIAEYITPAGLKIGSIRTDEGGEFEGEFQQVLDSHGITHEFTPPHTPQYNGVAAR 204
LK K + + G K+ IRTD GGE++G+F HGI H+FTPP TPQ NG+A R
Sbjct: 517 LKTKDQVFQVFKQFLTLVERETGKKLKCIRTDNGGEYQGQFDAYCKEHGIRHQFTPPKTPQLNGLAER 584
BLAST of mRNA_A-nodosum_M_contig12221.1.1 vs. uniprot
Match: UPI000BBF1F67 (uncharacterized protein LOC111201676 n=1 Tax=Brassica napus TaxID=3708 RepID=UPI000BBF1F67) HSP 1 Score: 62.4 bits (150), Expect = 1.000e-9 Identity = 28/68 (41.18%), Postives = 38/68 (55.88%), Query Frame = 1
Query: 1 LKKKSNAAAALRNIIAEYITPAGLKIGSIRTDEGGEFEGEFQQVLDSHGITHEFTPPHTPQYNGVAAR 204
++ K ++ +A G K+ IR+D GGE+ G F HGI H+FTPPHTPQ NG+A R
Sbjct: 1550 MRTKDQVLGYFKHFVALVERQTGKKLKCIRSDNGGEYLGPFDAYCKEHGIRHQFTPPHTPQLNGLAER 1617
BLAST of mRNA_A-nodosum_M_contig12221.1.1 vs. uniprot
Match: A0A6H5JJX1_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJX1_9PHAE) HSP 1 Score: 61.2 bits (147), Expect = 2.480e-9 Identity = 33/71 (46.48%), Postives = 42/71 (59.15%), Query Frame = 1
Query: 1 LKKKSNAAAALRNIIAEYIT---PAGLKIGSIRTDEGGEFEGEFQQVLDSHGITHEFTPPHTPQYNGVAAR 204
LK KS+AA + + T P + I T GG+F+G+F +V HGI EFTPPHTP+YNGVA R
Sbjct: 28 LKHKSDAAVGFEKFLGDDRTKGVPCEVYIAG--TSGGGKFQGQFAEVCRRHGIKQEFTPPHTPKYNGVAER 96
BLAST of mRNA_A-nodosum_M_contig12221.1.1 vs. uniprot
Match: A0A6D2HJZ4_9BRAS (Integrase catalytic domain-containing protein n=3 Tax=Microthlaspi erraticum TaxID=1685480 RepID=A0A6D2HJZ4_9BRAS) HSP 1 Score: 60.1 bits (144), Expect = 6.520e-9 Identity = 27/68 (39.71%), Postives = 37/68 (54.41%), Query Frame = 1
Query: 1 LKKKSNAAAALRNIIAEYITPAGLKIGSIRTDEGGEFEGEFQQVLDSHGITHEFTPPHTPQYNGVAAR 204
++ K ++ +A G K+ IR+D GGE+ G F HGI H+FTPP TPQ NG+A R
Sbjct: 509 MRTKDQVLGYFKHFVALVERQTGKKLKCIRSDNGGEYSGPFDAYCKEHGIRHQFTPPKTPQLNGLAER 576 The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig12221.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_A-nodosum_M_contig12221.1.1 >prot_A-nodosum_M_contig12221.1.1 ID=prot_A-nodosum_M_contig12221.1.1|Name=mRNA_A-nodosum_M_contig12221.1.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=68bp LKKKSNAAAALRNIIAEYITPAGLKIGSIRTDEGGEFEGEFQQVLDSHGIback to top mRNA from alignment at A-nodosum_M_contig12221:3534..3737+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_A-nodosum_M_contig12221.1.1 ID=mRNA_A-nodosum_M_contig12221.1.1|Name=mRNA_A-nodosum_M_contig12221.1.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=204bp|location=Sequence derived from alignment at A-nodosum_M_contig12221:3534..3737+ (Ascophyllum nodosum dioecious)back to top Coding sequence (CDS) from alignment at A-nodosum_M_contig12221:3534..3737+ >mRNA_A-nodosum_M_contig12221.1.1 ID=mRNA_A-nodosum_M_contig12221.1.1|Name=mRNA_A-nodosum_M_contig12221.1.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=204bp|location=Sequence derived from alignment at A-nodosum_M_contig12221:3534..3737+ (Ascophyllum nodosum dioecious)back to top |