mRNA_A-nodosum_M_contig12221.1.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig12221.1.1
Unique NamemRNA_A-nodosum_M_contig12221.1.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
BLAST of mRNA_A-nodosum_M_contig12221.1.1 vs. uniprot
Match: A0A6H5K2T3_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2T3_9PHAE)

HSP 1 Score: 76.6 bits (187), Expect = 9.060e-15
Identity = 37/69 (53.62%), Postives = 47/69 (68.12%), Query Frame = 1
Query:    1 LKKKSNAAAALRNIIAEYITPA-GLKIGSIRTDEGGEFEGEFQQVLDSHGITHEFTPPHTPQYNGVAAR 204
            LK KS+AA      +A+Y T     K+  +RTD GGEF+G+F +V  +HGI  EFTPPHTP+YNGVA R
Sbjct:   59 LKHKSDAAVGFEKFLADYRTKGVPCKVYIVRTDGGGEFQGQFAEVCRTHGIKQEFTPPHTPKYNGVAER 127          
BLAST of mRNA_A-nodosum_M_contig12221.1.1 vs. uniprot
Match: A0A6H5JM30_9PHAE (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JM30_9PHAE)

HSP 1 Score: 74.3 bits (181), Expect = 6.230e-14
Identity = 37/69 (53.62%), Postives = 46/69 (66.67%), Query Frame = 1
Query:    1 LKKKSNAAAALRNIIAEYITPA-GLKIGSIRTDEGGEFEGEFQQVLDSHGITHEFTPPHTPQYNGVAAR 204
            LK KS+AA  L   +A+Y T     ++   RTD GGEF+G+F +V   HGI  EFTPPHTP+YNGVA R
Sbjct:  683 LKHKSDAAVGLEKFLADYRTKGVPCEVYIARTDGGGEFQGQFAEVCRRHGIKQEFTPPHTPKYNGVAER 751          
BLAST of mRNA_A-nodosum_M_contig12221.1.1 vs. uniprot
Match: A0A6H5KAM7_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAM7_9PHAE)

HSP 1 Score: 71.6 bits (174), Expect = 5.470e-13
Identity = 35/69 (50.72%), Postives = 45/69 (65.22%), Query Frame = 1
Query:    1 LKKKSNAAAALRNIIAEYITPA-GLKIGSIRTDEGGEFEGEFQQVLDSHGITHEFTPPHTPQYNGVAAR 204
            LK KS+AA      +A+Y T     ++   RTD GGEF+G+F ++   HGI  EFTPPHTP+YNGVA R
Sbjct:   59 LKHKSDAAVGFEKFLADYRTKGVPCEVCIARTDGGGEFQGQFAELCRRHGIKEEFTPPHTPKYNGVAER 127          
BLAST of mRNA_A-nodosum_M_contig12221.1.1 vs. uniprot
Match: A0A6H5KGJ8_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGJ8_9PHAE)

HSP 1 Score: 70.5 bits (171), Expect = 1.180e-12
Identity = 34/69 (49.28%), Postives = 44/69 (63.77%), Query Frame = 1
Query:    1 LKKKSNAAAALRNIIAEYITP-AGLKIGSIRTDEGGEFEGEFQQVLDSHGITHEFTPPHTPQYNGVAAR 204
            LK KS+AA      + +Y T     ++   RTD+GGEF+G+F +V   HGI  EFTPPHTP+YN VA R
Sbjct:  253 LKHKSDAAVGFEKFLVDYRTKEVPCEVYITRTDDGGEFQGQFAEVFRRHGIKQEFTPPHTPKYNDVAER 321          
BLAST of mRNA_A-nodosum_M_contig12221.1.1 vs. uniprot
Match: A0A6H5JIN8_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIN8_9PHAE)

HSP 1 Score: 68.6 bits (166), Expect = 6.630e-12
Identity = 34/65 (52.31%), Postives = 42/65 (64.62%), Query Frame = 1
Query:   13 SNAAAALRNIIAEYITPA-GLKIGSIRTDEGGEFEGEFQQVLDSHGITHEFTPPHTPQYNGVAAR 204
            S+AA      +A+Y T     K+   RTD GGEF+G+F +V   HGI  EFTPPHTP+YNGVA R
Sbjct:  440 SDAAVGFEKSLADYRTKGVPCKVYIARTDGGGEFQGQFAEVCRRHGIKQEFTPPHTPKYNGVAER 504          
BLAST of mRNA_A-nodosum_M_contig12221.1.1 vs. uniprot
Match: A0A6H5JAQ2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAQ2_9PHAE)

HSP 1 Score: 68.6 bits (166), Expect = 6.740e-12
Identity = 36/70 (51.43%), Postives = 44/70 (62.86%), Query Frame = 1
Query:    1 LKKKSNAAAALRNIIAEYITPAGLKIGSI--RTDEGGEFEGEFQQVLDSHGITHEFTPPHTPQYNGVAAR 204
            LK KS+AA      +A+Y T  G+       R D GGEF+G+F +V   HGI  EFTPPHTP+YNGVA R
Sbjct:  738 LKHKSDAAVGFEKFLADYRTN-GVPCEDFIARADGGGEFQGQFAEVCRRHGIKQEFTPPHTPKYNGVAER 806          
BLAST of mRNA_A-nodosum_M_contig12221.1.1 vs. uniprot
Match: Q9ZRJ0_TOBAC (Retrotransposon Tto1 DNA n=2 Tax=Nicotiana tabacum TaxID=4097 RepID=Q9ZRJ0_TOBAC)

HSP 1 Score: 63.2 bits (152), Expect = 5.340e-10
Identity = 29/68 (42.65%), Postives = 37/68 (54.41%), Query Frame = 1
Query:    1 LKKKSNAAAALRNIIAEYITPAGLKIGSIRTDEGGEFEGEFQQVLDSHGITHEFTPPHTPQYNGVAAR 204
            LK K       +  +       G K+  IRTD GGE++G+F      HGI H+FTPP TPQ NG+A R
Sbjct:  517 LKTKDQVFQVFKQFLTLVERETGKKLKCIRTDNGGEYQGQFDAYCKEHGIRHQFTPPKTPQLNGLAER 584          
BLAST of mRNA_A-nodosum_M_contig12221.1.1 vs. uniprot
Match: UPI000BBF1F67 (uncharacterized protein LOC111201676 n=1 Tax=Brassica napus TaxID=3708 RepID=UPI000BBF1F67)

HSP 1 Score: 62.4 bits (150), Expect = 1.000e-9
Identity = 28/68 (41.18%), Postives = 38/68 (55.88%), Query Frame = 1
Query:    1 LKKKSNAAAALRNIIAEYITPAGLKIGSIRTDEGGEFEGEFQQVLDSHGITHEFTPPHTPQYNGVAAR 204
            ++ K       ++ +A      G K+  IR+D GGE+ G F      HGI H+FTPPHTPQ NG+A R
Sbjct: 1550 MRTKDQVLGYFKHFVALVERQTGKKLKCIRSDNGGEYLGPFDAYCKEHGIRHQFTPPHTPQLNGLAER 1617          
BLAST of mRNA_A-nodosum_M_contig12221.1.1 vs. uniprot
Match: A0A6H5JJX1_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJX1_9PHAE)

HSP 1 Score: 61.2 bits (147), Expect = 2.480e-9
Identity = 33/71 (46.48%), Postives = 42/71 (59.15%), Query Frame = 1
Query:    1 LKKKSNAAAALRNIIAEYIT---PAGLKIGSIRTDEGGEFEGEFQQVLDSHGITHEFTPPHTPQYNGVAAR 204
            LK KS+AA      + +  T   P  + I    T  GG+F+G+F +V   HGI  EFTPPHTP+YNGVA R
Sbjct:   28 LKHKSDAAVGFEKFLGDDRTKGVPCEVYIAG--TSGGGKFQGQFAEVCRRHGIKQEFTPPHTPKYNGVAER 96          
BLAST of mRNA_A-nodosum_M_contig12221.1.1 vs. uniprot
Match: A0A6D2HJZ4_9BRAS (Integrase catalytic domain-containing protein n=3 Tax=Microthlaspi erraticum TaxID=1685480 RepID=A0A6D2HJZ4_9BRAS)

HSP 1 Score: 60.1 bits (144), Expect = 6.520e-9
Identity = 27/68 (39.71%), Postives = 37/68 (54.41%), Query Frame = 1
Query:    1 LKKKSNAAAALRNIIAEYITPAGLKIGSIRTDEGGEFEGEFQQVLDSHGITHEFTPPHTPQYNGVAAR 204
            ++ K       ++ +A      G K+  IR+D GGE+ G F      HGI H+FTPP TPQ NG+A R
Sbjct:  509 MRTKDQVLGYFKHFVALVERQTGKKLKCIRSDNGGEYSGPFDAYCKEHGIRHQFTPPKTPQLNGLAER 576          
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig12221.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K2T3_9PHAE9.060e-1553.62Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JM30_9PHAE6.230e-1453.62Integrase catalytic domain-containing protein (Fra... [more]
A0A6H5KAM7_9PHAE5.470e-1350.72Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KGJ8_9PHAE1.180e-1249.28Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JIN8_9PHAE6.630e-1252.31Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JAQ2_9PHAE6.740e-1251.43Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
Q9ZRJ0_TOBAC5.340e-1042.65Retrotransposon Tto1 DNA n=2 Tax=Nicotiana tabacum... [more]
UPI000BBF1F671.000e-941.18uncharacterized protein LOC111201676 n=1 Tax=Brass... [more]
A0A6H5JJX1_9PHAE2.480e-946.48Integrase catalytic domain-containing protein n=1 ... [more]
A0A6D2HJZ4_9BRAS6.520e-939.71Integrase catalytic domain-containing protein n=3 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig12221contigA-nodosum_M_contig12221:3534..3737 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog164328.Phyra87570
PFAMsrve
Model size204
Max annot lvl4776|Peronosporales
Hectar predicted targeting categoryother localisation
Exons1
Evalue3.66e-09
EggNOG OGsCOG2801@1|root,KOG0017@2759|Eukaryota,3QGWN@4776|Peronosporales
DescriptionIntegrase core domain
Cds size204
COG categoryL
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866653.853966-CDS-A-nodosum_M_contig12221:3533..37371680866653.853966-CDS-A-nodosum_M_contig12221:3533..3737Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig12221 3534..3737 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig12221.1.1prot_A-nodosum_M_contig12221.1.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig12221 3534..3737 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig12221.1.1

>prot_A-nodosum_M_contig12221.1.1 ID=prot_A-nodosum_M_contig12221.1.1|Name=mRNA_A-nodosum_M_contig12221.1.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=68bp
LKKKSNAAAALRNIIAEYITPAGLKIGSIRTDEGGEFEGEFQQVLDSHGI
THEFTPPHTPQYNGVAAR
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mRNA from alignment at A-nodosum_M_contig12221:3534..3737+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig12221.1.1 ID=mRNA_A-nodosum_M_contig12221.1.1|Name=mRNA_A-nodosum_M_contig12221.1.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=204bp|location=Sequence derived from alignment at A-nodosum_M_contig12221:3534..3737+ (Ascophyllum nodosum dioecious)
TTGAAGAAAAAGAGTAATGCCGCCGCCGCGCTAAGAAATATCATCGCCGA GTACATCACCCCTGCTGGGTTGAAGATCGGTTCCATTCGAACCGACGAGG GAGGCGAGTTTGAGGGTGAGTTTCAGCAGGTGCTTGACTCACATGGCATC ACTCACGAGTTCACACCTCCTCATACGCCACAATACAATGGGGTGGCAGC GCGA
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Coding sequence (CDS) from alignment at A-nodosum_M_contig12221:3534..3737+

>mRNA_A-nodosum_M_contig12221.1.1 ID=mRNA_A-nodosum_M_contig12221.1.1|Name=mRNA_A-nodosum_M_contig12221.1.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=204bp|location=Sequence derived from alignment at A-nodosum_M_contig12221:3534..3737+ (Ascophyllum nodosum dioecious)
TTGAAGAAAAAGAGTAATGCCGCCGCCGCGCTAAGAAATATCATCGCCGA
GTACATCACCCCTGCTGGGTTGAAGATCGGTTCCATTCGAACCGACGAGG
GAGGCGAGTTTGAGGGTGAGTTTCAGCAGGTGCTTGACTCACATGGCATC
ACTCACGAGTTCACACCTCCTCATACGCCACAATACAATGGGGTGGCAGC
GCGA
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